Details for: NRN1L

Gene ID: 123904

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: NRN1L

Ensembl ID: ENSG00000188038

Description: neuritin 1 like

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • erythrocyte CL0000232
    CSI 13.36
    rCSI 30.31%
    PRS 99.98
  • rod bipolar cell CL0000751
    CSI 8.21
    rCSI 14.76%
    PRS 99.97
  • glutamatergic neuron CL0000679
    CSI 6.83
    rCSI 14.03%
    PRS 99.6
  • glial cell CL0000125
    CSI 4.66
    rCSI 17.75%
    PRS 99.84
  • GABAergic neuron CL0000617
    CSI 4.02
    rCSI 13.46%
    PRS 99.53
  • melanocyte of skin CL1000458
    CSI 2.62
    rCSI 3.57%
    PRS 99.76

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

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  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [NRN1L](/details-gene/123904) (Neuritin 1 Like) is a protein-coding gene that encodes a neuritin-like, GPI-anchored protein. Functional annotations strongly suggest a role in the nervous system, particularly in processes related to neuron projection extension ([GO:1990138](https://www.ebi.ac.uk/QuickGO/term/GO:1990138)) and post-translational protein modification ([R-HSA-597592](https://reactome.org/content/detail/R-HSA-597592)). Consistent with this, its expression is highly significant in several neuronal populations, including [rod bipolar cells](/details-cell/CL0000751) and [glutamatergic neurons](/details-cell/CL0000679). Intriguingly, the highest significance score for [NRN1L](/details-gene/123904) is observed in [erythrocytes](/details-cell/CL0000232), suggesting a potentially novel and important function for this protein outside of the nervous system. The identification of [NRN1L](/details-gene/123904) was part of large-scale projects to characterize novel human secreted and transmembrane proteins ([Link](https://doi.org/10.1101/gr.1293003), [Link](https://doi.org/10.1101/gr.2596504)). ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [NRN1L](/details-gene/123904) highlights a dual identity, with strong associations in both the nervous system and the hematopoietic lineage. Its significance in diverse neural cell types, including [rod bipolar cells](/details-cell/CL0000751) (CSI: 8.21), [glutamatergic neurons](/details-cell/CL0000679) (CSI: 6.83), [GABAergic neurons](/details-cell/CL0000617) (CSI: 4.02), and [glial cells](/details-cell/CL0000125) (CSI: 4.66), solidifies its predicted role in neural development and function. Expression is also noted in [melanocytes of skin](/details-cell/CL1000458), cells of neural crest origin. The most striking finding, however, is the exceptionally high significance of [NRN1L](/details-gene/123904) in [erythrocytes](/details-cell/CL0000232) (CSI: 13.36), which are non-nucleated cells devoid of typical neuronal structures. This robust signal suggests that [NRN1L](/details-gene/123904) may have a previously uncharacterized role in erythropoiesis, the maintenance of red blood cell membrane integrity, or intercellular signaling involving [erythrocytes](/details-cell/CL0000232). This expression pattern indicates that the function of [NRN1L](/details-gene/123904) may be more pleiotropic than its name implies. ## Pathways and Molecular Function The molecular functions attributed to [NRN1L](/details-gene/123904) are consistent with its role as an extracellular, membrane-associated protein. Its involvement in 'neuron projection extension' ([GO:1990138](https://www.ebi.ac.uk/QuickGO/term/GO:1990138)) and its localization to the 'axon' ([GO:0030424](https://www.ebi.ac.uk/QuickGO/term/GO:0030424)) and 'extracellular space' ([GO:0005615](https://www.ebi.ac.uk/QuickGO/term/GO:0005615)) provide a direct molecular basis for its high significance in neuronal cells. Mechanistically, [NRN1L](/details-gene/123904) is linked to 'Post-translational modification: synthesis of gpi-anchored proteins' ([R-HSA-163125](https://reactome.org/content/detail/R-HSA-163125)). This indicates the protein is tethered to the outer leaflet of the plasma membrane by a glycosylphosphatidylinositol (GPI) anchor, positioning its main protein body to interact with the extracellular environment. This structure is ideal for mediating cell-cell recognition or responding to external signals, functions that could be relevant in both neural circuit formation and in the biology of circulating [erythrocytes](/details-cell/CL0000232). ## Research Directions The dichotomous expression pattern of [NRN1L](/details-gene/123904) in both neuronal and erythroid lineages presents exciting avenues for future research to reconcile these seemingly disparate roles. ### Proposed Hypotheses 1. **[NRN1L](/details-gene/123904) is a critical regulator of erythropoiesis or mature erythrocyte function.** The exceptionally high CSI score in [erythrocytes](/details-cell/CL0000232) suggests that [NRN1L](/details-gene/123904) may be involved in the terminal stages of red blood cell differentiation, membrane remodeling during enucleation, or in maintaining the structural plasticity of the erythrocyte membrane. 2. **[NRN1L](/details-gene/123904) functions as a context-dependent signaling molecule promoting neurite outgrowth and synaptic stability.** In the nervous system, its GPI-anchor and extracellular localization suggest it may act as a ligand or co-receptor in signaling pathways that guide axonal pathfinding and stabilize synaptic connections, particularly within the retina and glutamatergic circuits. ### Experimental Approach To test the hypothesis regarding its role in erythropoiesis, a robust experimental plan is necessary. One could perform a CRISPR-Cas9-mediated knockout of [NRN1L](/details-gene/123904) in human CD34+ hematopoietic stem and progenitor cells. These modified cells would then be differentiated *in vitro* along the erythroid lineage. The impact of [NRN1L](/details-gene/123904) loss could be assessed by monitoring key checkpoints of erythropoiesis, including proliferation rates, expression of differentiation markers (e.g., CD71, CD235a) by flow cytometry, hemoglobin production, and the efficiency of enucleation using imaging flow cytometry or microscopy. ### Therapeutic Potential The therapeutic potential of [NRN1L](/details-gene/123904) is currently speculative but intriguing. As a GPI-anchored protein, it is located on the cell surface, making it an accessible target for biologics like monoclonal antibodies. If its function in neuronal development is confirmed to be critical, it could be explored as a target for promoting regeneration after neural injury. Conversely, if its role in [erythrocytes](/details-cell/CL0000232) is linked to specific hematological disorders, such as certain types of anemia or membrane-related pathologies, modulating its activity or expression could present a novel therapeutic strategy. The precise approach (inhibition vs. activation) would depend heavily on elucidating its specific molecular function in these disease contexts.

Genular Protein ID: 2359891586

Symbol: NRN1L_HUMAN

Name: Neuritin-like protein

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 12975309

Title: The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment.

PubMed ID: 12975309

DOI: 10.1101/gr.1293003

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

  • Length: 165
  • Mass: 17786
  • Checksum: 455BD71ADEB6F0CC
  • Sequence:
  • MMRCCRRRCC CRQPPHALRP LLLLPLVLLP PLAAAAAGPN RCDTIYQGFA ECLIRLGDSM 
    GRGGELETIC RSWNDFHACA SQVLSGCPEE AAAVWESLQQ EARQAPRPNN LHTLCGAPVH 
    VRERGTGSET NQETLRATAP ALPMAPAPPL LAAALALAYL LRPLA