Details for: SLC22A31

Gene ID: 146429

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: SLC22A31

Ensembl ID: ENSG00000259803

Description: solute carrier family 22 member 31

Cell Significance Landscape

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • epithelial cell of lung CL0000082
    CSI 10.92
    rCSI 9.05%
    PRS 99.21
  • epithelial cell of lower respiratory tract CL0002632
    CSI 6.58
    rCSI 5.1%
    PRS 99.32
  • cerebellar granule cell CL0001031
    CSI 4.66
    rCSI 6.85%
    PRS 96.59
  • pulmonary alveolar type 2 cell CL0002063
    CSI 4.36
    rCSI 6.76%
    PRS 98.63
  • lung secretory cell CL1000272
    CSI 2.86
    rCSI 7.08%
    PRS 99.25

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

Loading network (please wait)...

Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [SLC22A31](/details-gene/146429), or Solute Carrier Family 22 Member 31, is a protein-coding gene located on chromosome 16q24.3. As a member of the extensive solute carrier (SLC) superfamily, its primary molecular function is associated with transmembrane transport. Expression data indicates that **Overall**, [SLC22A31](/details-gene/146429) is most significantly expressed in the respiratory system, with particularly high significance in the `[epithelial cell of lung](/details-cell/CL0000082)` and `[epithelial cell of lower respiratory tract](/details-cell/CL0002632)`. This specific expression pattern suggests a specialized role in regulating the transport of ions or small molecules across the epithelial barrier of the lungs. ## Cellular Roles and Expression Landscape The expression profile of [SLC22A31](/details-gene/146429) points to a highly specialized function, predominantly within the lung epithelium. **Overall**, its most significant expression is observed in `[epithelial cell of lung](/details-cell/CL0000082)` (CSI: 10.92) and more specifically in `[epithelial cell of lower respiratory tract](/details-cell/CL0002632)` (CSI: 6.58). This includes key functional cell types such as the `[pulmonary alveolar type 2 cell](/details-cell/CL0002063)` (CSI: 4.36), which are critical for surfactant production and alveolar repair, and `[lung secretory cell](/details-cell/CL1000272)` (CSI: 2.86). This strong and consistent signal across multiple lung epithelial subtypes suggests that [SLC22A31](/details-gene/146429) is a key transporter maintaining homeostasis, fluid balance, or secretion in the pulmonary environment. Notably, a significant signal is also detected in `[cerebellar granule cell](/details-cell/CL0001031)` (CSI: 4.66), suggesting a potential secondary, though important, role in the central nervous system. Its function in these neurons may relate to the transport of specific metabolites or signaling molecules essential for neuronal activity in the cerebellum. ## Pathways and Molecular Function The functional annotations for [SLC22A31](/details-gene/146429) are consistent with its identity as a member of the solute carrier family. Gene Ontology (GO) terms classify its molecular function as `[transmembrane transporter activity](/details-go/GO0022857)` and its biological process as involving `[monoatomic ion transport](/details-go/GO0006811)` and general `[transmembrane transport](/details-go/GO0055085)`. These functions are carried out at the `[membrane](/details-go/GO0016020)`, where the protein is localized. This functional role as a transporter aligns perfectly with its high expression in secretory and barrier cells like the `[pulmonary alveolar type 2 cell](/details-cell/CL0002063)`. In the lung, the precise regulation of ion and solute gradients across the alveolar epithelium is crucial for maintaining airway surface liquid volume, facilitating gas exchange, and enabling processes like surfactant secretion. The involvement of [SLC22A31](/details-gene/146429) in monoatomic ion transport suggests it could be a key component in these homeostatic mechanisms. ## Research Directions The specific expression pattern of [SLC22A31](/details-gene/146429) in lung and cerebellar cells, coupled with its uncharacterized substrate specificity, presents several avenues for future investigation. **Testable Hypotheses:** 1. Given its high significance in `[pulmonary alveolar type 2 cell](/details-cell/CL0002063)`, [SLC22A31](/details-gene/146429) may transport a specific substrate, such as a choline precursor or an ion, that is rate-limiting for the synthesis or secretion of pulmonary surfactant. Its dysregulation could therefore contribute to respiratory distress syndromes. 2. The expression of [SLC22A31](/details-gene/146429) in `[cerebellar granule cell](/details-cell/CL0001031)` suggests it may be involved in neuronal homeostasis. It could function in the uptake or efflux of a specific neuromodulator, metabolite, or waste product, thereby influencing the excitability and function of cerebellar circuits. **Proposed Experimental Approach:** To test the first hypothesis regarding its role in surfactant regulation, a targeted loss-of-function study could be performed. Specifically, one could use CRISPR-Cas9 to knock out [SLC22A31](/details-gene/146429) in a human alveolar epithelial cell line (e.g., A549) or in primary murine alveolar type 2 cells. The functional consequences would be assessed by quantifying surfactant-associated phospholipids and proteins (e.g., SP-A, SP-B) using mass spectrometry and western blotting. Furthermore, secretagogue-stimulated surfactant release assays could determine if the transporter is essential for the secretion process itself. **Therapeutic Potential:** As a membrane-bound solute carrier with high tissue-specificity, [SLC22A31](/details-gene/146429) represents a potentially attractive therapeutic target. Its pronounced expression in the lung epithelium suggests that it could be targeted to modulate pulmonary function with minimal off-target effects in other organ systems. If its substrate is found to be a pro-inflammatory molecule or a substance involved in fibrosis, developing a small-molecule inhibitor for [SLC22A31](/details-gene/146429) could be a viable strategy for treating diseases like idiopathic pulmonary fibrosis or acute respiratory distress syndrome (ARDS). Conversely, if it is involved in clearing toxic metabolites or providing essential nutrients for alveolar repair, designing an agonist could be beneficial. Determining its specific substrate is the critical next step to evaluating its full therapeutic potential.