Details for: SHISAL2B

Gene ID: 100132916

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: SHISAL2B

Ensembl ID: ENSG00000145642

Description: shisa like 2B

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • pancreatic D cell CL0000173
    CSI 6.62
    rCSI 6.51%
    PRS 99.78
  • pancreatic A cell CL0000171
    CSI 3.95
    rCSI 4.14%
    PRS 99.75
  • type B pancreatic cell CL0000169
    CSI 3.17
    rCSI 7.01%
    PRS 99.59
  • pancreatic PP cell CL0002275
    CSI 2.27
    rCSI 9.04%
    PRS 99.6
  • pancreatic epsilon cell CL0005019
    CSI 2.05
    rCSI 9.58%
    PRS 99.83

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

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  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [SHISAL2B](/details-gene/100132916) is a protein-coding gene located on human chromosome 5q12.3, as identified in the initial sequencing and analysis of this chromosome [[Link](https://doi.org/10.1038/nature02919)]. Functional annotation suggests its protein product is an integral component of the [Membrane](/details-cell/GO:0016020). Expression data reveals a remarkably specific and high-level significance across various endocrine cell types of the pancreas. **Overall**, it is a top marker for [pancreatic D cell](/details-cell/CL0000173), [pancreatic A cell](/details-cell/CL0000171), and [type B pancreatic cell](/details-cell/CL0000169), suggesting a specialized role in the regulation and function of pancreatic islets. ## Cellular Roles and Expression Landscape The expression profile of [SHISAL2B](/details-gene/100132916) points to a highly specialized function within the endocrine pancreas. The gene exhibits its highest significance in [pancreatic D cell](/details-cell/CL0000173) (CSI: 6.62), which are responsible for secreting somatostatin. It also shows substantial significance in other key islet cells, including glucagon-secreting [pancreatic A cell](/details-cell/CL0000171) (CSI: 3.95), insulin-secreting [type B pancreatic cell](/details-cell/CL0000169) (CSI: 3.17), pancreatic polypeptide-secreting [pancreatic PP cell](/details-cell/CL0002275) (CSI: 2.27), and ghrelin-secreting [pancreatic epsilon cell](/details-cell/CL0005019) (CSI: 2.05). This consistent high ranking across the major hormone-producing cells of the pancreatic islets suggests [SHISAL2B](/details-gene/100132916) is integral to the shared physiological functions of this microenvironment, such as hormone synthesis, processing, or regulated secretion. The highly restricted expression pattern implies that its function is tailored to the unique demands of endocrine signaling and glucose homeostasis, with likely minimal roles in other tissues. ## Pathways and Molecular Function The functional annotation for [SHISAL2B](/details-gene/100132916) is currently limited, with the primary evidence pointing to its localization as a [Membrane](/details-cell/GO:0016020) protein. This is consistent with its high expression in secretory endocrine cells. As a membrane protein within pancreatic islets, it could potentially function as a receptor, an ion channel, or a component of the exocytotic machinery involved in the fusion of hormone-containing vesicles with the plasma membrane. Its presence across multiple islet cell types suggests it may participate in a fundamental process common to all of them, possibly related to sensing the extracellular environment or participating in the complex paracrine communication network that coordinates islet hormonal output. ## Research Directions The specific expression of [SHISAL2B](/details-gene/100132916) in pancreatic islets, coupled with its unknown function, presents a clear opportunity for investigation into pancreatic biology and metabolic disease. **Proposed Hypotheses:** 1. [SHISAL2B](/details-gene/100132916) is a critical component of the hormone secretion pathway in pancreatic islet cells. Its loss of function would lead to impaired secretion of insulin, glucagon, and somatostatin in response to physiological stimuli. 2. Given its presence across different islet cell types, [SHISAL2B](/details-gene/100132916) may act as a signaling molecule or receptor that mediates paracrine communication between alpha, beta, and delta cells, thereby contributing to the coordinated regulation of glucose homeostasis. **Key Experimental Approach:** To test the hypothesis that [SHISAL2B](/details-gene/100132916) is essential for hormone secretion, a loss-of-function study could be performed. Using CRISPR-Cas9, [SHISAL2B](/details-gene/100132916) could be knocked out in primary human pancreatic islets or relevant cell lines (e.g., EndoC-βH1 for beta cells). Following gene ablation, a series of functional assays would be conducted. For beta cells, a glucose-stimulated insulin secretion (GSIS) assay would reveal any defects in insulin release. Similar stimulation assays using amino acids or potassium chloride for alpha cells (glucagon secretion) and delta cells (somatostatin secretion) would provide a comprehensive view of the gene's role across the islet. **Therapeutic Potential:** Given its highly specific expression in pancreatic islets and its predicted membrane localization, [SHISAL2B](/details-gene/100132916) represents a potential therapeutic target for metabolic disorders such as diabetes. If its function is to promote hormone secretion, small molecule agonists targeting the SHISAL2B protein could be developed to enhance insulin release from beta cells in type 2 diabetes. Conversely, if its dysregulation contributes to islet dysfunction, it could be a target for inhibition. Its specificity offers a significant advantage, as targeting [SHISAL2B](/details-gene/100132916) would be less likely to cause off-target effects in other tissues. However, its precise role must be elucidated before its therapeutic value can be properly assessed.

Genular Protein ID: 3938291532

Symbol: SHL2B_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 15372022

Title: The DNA sequence and comparative analysis of human chromosome 5.

PubMed ID: 15372022

DOI: 10.1038/nature02919

Sequence Information:

  • Length: 160
  • Mass: 17663
  • Checksum: 44B58414266BF516
  • Sequence:
  • MSEASRLCSG YYSLNQSFVE PFQCPRRGEG AALQYCCGFA DLKYCCSEPG SYFPYKHSYM 
    WSLSIGALIG LGIAALVLLA FVISVCVLCY LFLYTKPQRL DTGLKLQHLE ASSTQEGKSN 
    GKTKALNSNA ASNATNETYY EADDIIQEKT MDATQIHIAY