Details for: CWC15

Gene ID: 51503

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: CWC15

Ensembl ID: ENSG00000150316

Description: CWC15 spliceosome associated protein homolog

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • CD4-positive helper T cell CL0000492
    CSI 21.75
    rCSI 16.46%
    PRS 51.51
  • fallopian tube secretory epithelial cell CL4030006
    CSI 21.7
    rCSI 20.89%
    PRS 40.53
  • chondrocyte CL0000138
    CSI 19.6
    rCSI 31.17%
    PRS 33.93
  • alveolar macrophage CL0000583
    CSI 13.55
    rCSI 22.31%
    PRS 45.1
  • basal-myoepithelial cell of mammary gland CL0002324
    CSI 13.46
    rCSI 25.45%
    PRS 63.83
  • common dendritic progenitor CL0001029
    CSI 13.04
    rCSI 16.37%
    PRS 49.08
  • hematopoietic precursor cell CL0008001
    CSI 12.35
    rCSI 12.71%
    PRS 57.16
  • podocyte CL0000653
    CSI 12.01
    rCSI 53.39%
    PRS 38.49
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 11.18
    rCSI 10.1%
    PRS 36.73
  • forebrain radial glial cell CL0013000
    CSI 11.1
    rCSI 35.63%
    PRS 48.1
  • vascular associated smooth muscle cell CL0000359
    CSI 10.66
    rCSI 34.59%
    PRS 43.37
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 10.35
    rCSI 12.5%
    PRS 46.97
  • pancreatic ductal cell CL0002079
    CSI 9.86
    rCSI 19.17%
    PRS 41.73
  • effector memory CD8-positive, alpha-beta T cell CL0000913
    CSI 9.47
    rCSI 8.63%
    PRS 54.47
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 9.34
    rCSI 26.79%
    PRS 56.6
  • intestine goblet cell CL0019031
    CSI 8.89
    rCSI 7.9%
    PRS 39.14
  • retina horizontal cell CL0000745
    CSI 8.71
    rCSI 13.28%
    PRS 37.02
  • pancreatic acinar cell CL0002064
    CSI 8.63
    rCSI 11.48%
    PRS 44.23
  • paneth cell CL0000510
    CSI 8.54
    rCSI 12.61%
    PRS 56.98
  • colon epithelial cell CL0011108
    CSI 8.3
    rCSI 8.69%
    PRS 37.51
  • T follicular helper cell CL0002038
    CSI 8.02
    rCSI 6.01%
    PRS 53.95
  • CD14-positive monocyte CL0001054
    CSI 7.97
    rCSI 9.92%
    PRS 50.87
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 7.88
    rCSI 40.69%
    PRS 63.83
  • lung secretory cell CL1000272
    CSI 7.73
    rCSI 19.13%
    PRS 38.09
  • mesenchymal stem cell CL0000134
    CSI 7.56
    rCSI 82.82%
    PRS 56.94
  • secretory cell CL0000151
    CSI 7.53
    rCSI 7.86%
    PRS 40.49
  • common myeloid progenitor CL0000049
    CSI 7.02
    rCSI 5.68%
    PRS 40.41
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 7
    rCSI 6.88%
    PRS 54.69
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 6.96
    rCSI 12.29%
    PRS 25.06
  • ciliated cell CL0000064
    CSI 6.85
    rCSI 11.09%
    PRS 38.76
  • pancreatic D cell CL0000173
    CSI 6.84
    rCSI 6.72%
    PRS 42.18
  • Schwann cell CL0002573
    CSI 6.82
    rCSI 19.39%
    PRS 40.13
  • melanocyte CL0000148
    CSI 6.78
    rCSI 5.02%
    PRS 34.31
  • erythroblast CL0000765
    CSI 6.62
    rCSI 17.56%
    PRS 53.26
  • perivascular cell CL4033054
    CSI 6.59
    rCSI 9.01%
    PRS 44.45
  • stem cell CL0000034
    CSI 6.44
    rCSI 6.21%
    PRS 31.41
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 6.4
    rCSI 5.92%
    PRS 60.06
  • double negative thymocyte CL0002489
    CSI 6.28
    rCSI 4.37%
    PRS 47.76
  • peripheral nervous system neuron CL2000032
    CSI 6.16
    rCSI 8.4%
    PRS 34.33
  • myoepithelial cell CL0000185
    CSI 5.82
    rCSI 14.74%
    PRS 47.74
  • megakaryocyte CL0000556
    CSI 5.81
    rCSI 25.21%
    PRS 55.71
  • basal cell CL0000646
    CSI 5.79
    rCSI 7.74%
    PRS 41.67
  • radial glial cell CL0000681
    CSI 5.77
    rCSI 8.01%
    PRS 39.65
  • pulmonary capillary endothelial cell CL4028001
    CSI 5.6
    rCSI 10.68%
    PRS 56.39
  • pancreatic stellate cell CL0002410
    CSI 5.43
    rCSI 31.57%
    PRS 51.07
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 5.31
    rCSI 15.66%
    PRS 44.23
  • Bergmann glial cell CL0000644
    CSI 5.3
    rCSI 7.26%
    PRS 37.13
  • non-classical monocyte CL0000875
    CSI 5.06
    rCSI 8.12%
    PRS 69.24
  • retinal ganglion cell CL0000740
    CSI 5.03
    rCSI 11.11%
    PRS 29.68
  • primitive red blood cell CL0002355
    CSI 5
    rCSI 26.99%
    PRS 54.99
  • Hofbauer cell CL3000001
    CSI 4.99
    rCSI 9.41%
    PRS 49.33
  • pulmonary ionocyte CL0017000
    CSI 4.97
    rCSI 6.05%
    PRS 47.15
  • naive T cell CL0000898
    CSI 4.89
    rCSI 3.4%
    PRS 52.25
  • common lymphoid progenitor CL0000051
    CSI 4.82
    rCSI 6.44%
    PRS 62.37
  • intestinal epithelial cell CL0002563
    CSI 4.8
    rCSI 5.02%
    PRS 39.76
  • CD8-positive, alpha-beta memory T cell CL0000909
    CSI 4.78
    rCSI 5%
    PRS 70.79
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 4.72
    rCSI 23.67%
    PRS 50.28
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 4.64
    rCSI 12.01%
    PRS 36.57
  • epithelial cell of lung CL0000082
    CSI 4.64
    rCSI 3.85%
    PRS 38.47
  • alveolar adventitial fibroblast CL4028006
    CSI 4.62
    rCSI 7.3%
    PRS 40.9
  • granulocyte monocyte progenitor cell CL0000557
    CSI 4.57
    rCSI 3.96%
    PRS 43.67
  • sst GABAergic cortical interneuron CL4023017
    CSI 4.54
    rCSI 5.85%
    PRS 26.88
  • pancreatic A cell CL0000171
    CSI 4.43
    rCSI 4.64%
    PRS 42.31
  • ciliated epithelial cell CL0000067
    CSI 4.33
    rCSI 3.8%
    PRS 30.22
  • neural crest cell CL0011012
    CSI 4.25
    rCSI 3.36%
    PRS 28.89
  • BEST4+ enteroycte CL4030026
    CSI 4.16
    rCSI 5.17%
    PRS 42.39
  • enteroendocrine cell CL0000164
    CSI 4.11
    rCSI 5.61%
    PRS 42.56
  • bronchus fibroblast of lung CL2000093
    CSI 4.11
    rCSI 3.34%
    PRS 40.88
  • inhibitory interneuron CL0000498
    CSI 4.09
    rCSI 9.45%
    PRS 32.82
  • keratinocyte CL0000312
    CSI 3.93
    rCSI 3.3%
    PRS 44.99
  • elicited macrophage CL0000861
    CSI 3.92
    rCSI 3.6%
    PRS 46.8
  • promyelocyte CL0000836
    CSI 3.86
    rCSI 5.57%
    PRS 49.86
  • myofibroblast cell CL0000186
    CSI 3.82
    rCSI 5.28%
    PRS 45.59
  • plasmablast CL0000980
    CSI 3.79
    rCSI 2.98%
    PRS 45.88
  • hematopoietic stem cell CL0000037
    CSI 3.78
    rCSI 2.52%
    PRS 44.01
  • type B pancreatic cell CL0000169
    CSI 3.78
    rCSI 8.37%
    PRS 37.25
  • microcirculation associated smooth muscle cell CL0008035
    CSI 3.77
    rCSI 10.92%
    PRS 42.47
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.72
    rCSI 2.98%
    PRS 61.14
  • CD16-positive, CD56-dim natural killer cell, human CL0000939
    CSI 3.69
    rCSI 2.46%
    PRS 66.06
  • large pre-B-II cell CL0000957
    CSI 3.6
    rCSI 10.29%
    PRS 54.64
  • mononuclear phagocyte CL0000113
    CSI 3.52
    rCSI 7.74%
    PRS 43.62
  • epithelial cell CL0000066
    CSI 3.51
    rCSI 5.39%
    PRS 43.35
  • club cell CL0000158
    CSI 3.47
    rCSI 5.09%
    PRS 40.19
  • lung pericyte CL0009089
    CSI 3.46
    rCSI 9.14%
    PRS 46.91
  • fraction A pre-pro B cell CL0002045
    CSI 3.45
    rCSI 3.95%
    PRS 62.53
  • extravillous trophoblast CL0008036
    CSI 3.37
    rCSI 4.17%
    PRS 35.99
  • precursor B cell CL0000817
    CSI 3.32
    rCSI 2.91%
    PRS 49.35
  • M cell of gut CL0000682
    CSI 3.32
    rCSI 3.52%
    PRS 55.28
  • conventional dendritic cell CL0000990
    CSI 3.28
    rCSI 2.74%
    PRS 62.38
  • colonocyte CL1000347
    CSI 3.26
    rCSI 4.68%
    PRS 47.39
  • cerebellar granule cell CL0001031
    CSI 3.05
    rCSI 4.48%
    PRS 36.69
  • luminal cell of prostate epithelium CL0002340
    CSI 2.98
    rCSI 16.03%
    PRS 55.78
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 2.97
    rCSI 3.69%
    PRS 24.61
  • CD16-negative, CD56-bright natural killer cell, human CL0000938
    CSI 2.96
    rCSI 2.22%
    PRS 72.85
  • plasmacytoid dendritic cell, human CL0001058
    CSI 2.94
    rCSI 2.06%
    PRS 41.65
  • type L enteroendocrine cell CL0002279
    CSI 2.91
    rCSI 5.47%
    PRS 60.02
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 2.85
    rCSI 3.89%
    PRS 67.72
  • unswitched memory B cell CL0000970
    CSI 2.81
    rCSI 2.36%
    PRS 56.77
  • myeloid leukocyte CL0000766
    CSI 2.81
    rCSI 2.59%
    PRS 40.99
  • respiratory basal cell CL0002633
    CSI 2.79
    rCSI 2.89%
    PRS 45.41
  • cytotoxic T cell CL0000910
    CSI 0.1
    rCSI 0.8%
    PRS 52.0%
  • B-1 B cell CL0000819
    CSI 0.1
    rCSI 3.5%
    PRS 81.9%
  • paneth cell of colon CL0009009
    CSI 0.2
    rCSI 1.8%
    PRS 66.1%
  • P/D1 enteroendocrine cell CL0002268
    CSI 0.2
    rCSI 1.2%
    PRS 63.3%
  • hair follicular keratinocyte CL2000092
    CSI 0.2
    rCSI 4.0%
    PRS 75.9%
  • epithelial cell of esophagus CL0002252
    CSI 0.3
    rCSI 2.5%
    PRS 68.6%
  • cord blood hematopoietic stem cell CL2000095
    CSI 0.3
    rCSI 5.0%
    PRS 88.0%
  • enterocyte of epithelium of small intestine CL1000334
    CSI 0.3
    rCSI 4.1%
    PRS 66.8%
  • pre-conventional dendritic cell CL0002010
    CSI 0.3
    rCSI 4.4%
    PRS 73.7%
  • megakaryocyte progenitor cell CL0000553
    CSI 0.4
    rCSI 6.5%
    PRS 74.9%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 0.4
    rCSI 1.2%
    PRS 29.1%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.4
    rCSI 2.8%
    PRS 60.2%
  • epithelial cell of nephron CL1000449
    CSI 0.4
    rCSI 3.9%
    PRS 81.6%
  • peptic cell CL0000155
    CSI 0.4
    rCSI 4.1%
    PRS 67.8%
  • type EC enteroendocrine cell CL0000577
    CSI 0.4
    rCSI 1.5%
    PRS 53.4%
  • respiratory goblet cell CL0002370
    CSI 0.4
    rCSI 4.6%
    PRS 60.8%
  • enteroendocrine cell of colon CL0009042
    CSI 0.4
    rCSI 2.1%
    PRS 66.6%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 0.5
    rCSI 1.3%
    PRS 48.7%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.5
    rCSI 3.0%
    PRS 65.2%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 0.5
    rCSI 0.9%
    PRS 26.0%
  • respiratory epithelial cell CL0002368
    CSI 0.5
    rCSI 3.2%
    PRS 76.2%
  • myeloid dendritic cell CL0000782
    CSI 0.5
    rCSI 0.8%
    PRS 55.5%
  • myeloid dendritic cell, human CL0001057
    CSI 0.6
    rCSI 3.1%
    PRS 72.7%
  • hepatocyte CL0000182
    CSI 0.6
    rCSI 1.0%
    PRS 38.4%
  • deuterosomal cell CL4033044
    CSI 0.6
    rCSI 2.0%
    PRS 50.4%
  • endothelial cell of placenta CL0009092
    CSI 0.6
    rCSI 3.1%
    PRS 51.0%
  • IgG plasma cell CL0000985
    CSI 0.6
    rCSI 0.8%
    PRS 58.5%
  • helper T cell CL0000912
    CSI 0.6
    rCSI 0.9%
    PRS 49.2%
  • intermediate monocyte CL0002393
    CSI 0.7
    rCSI 1.0%
    PRS 41.5%
  • stromal cell of ovary CL0002132
    CSI 0.7
    rCSI 1.8%
    PRS 55.5%
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 0.7
    rCSI 1.6%
    PRS 25.2%
  • eosinophil CL0000771
    CSI 0.7
    rCSI 4.4%
    PRS 71.5%
  • L6b glutamatergic cortical neuron CL4023038
    CSI 0.7
    rCSI 2.2%
    PRS 27.1%
  • colon goblet cell CL0009039
    CSI 0.7
    rCSI 1.7%
    PRS 52.4%
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 0.7
    rCSI 1.4%
    PRS 57.7%
  • pancreatic PP cell CL0002275
    CSI 0.7
    rCSI 2.9%
    PRS 55.6%
  • CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell CL0000915
    CSI 0.8
    rCSI 3.4%
    PRS 76.4%
  • retinal bipolar neuron CL0000748
    CSI 0.8
    rCSI 1.4%
    PRS 30.9%
  • thymocyte CL0000893
    CSI 0.8
    rCSI 2.8%
    PRS 76.7%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 0.8
    rCSI 1.9%
    PRS 57.1%
  • primordial germ cell CL0000670
    CSI 0.8
    rCSI 4.0%
    PRS 82.4%
  • transit amplifying cell CL0009010
    CSI 0.8
    rCSI 1.2%
    PRS 56.0%
  • transitional stage B cell CL0000818
    CSI 0.8
    rCSI 2.7%
    PRS 72.3%
  • bronchial goblet cell CL1000312
    CSI 0.9
    rCSI 3.5%
    PRS 61.7%
  • syncytiotrophoblast cell CL0000525
    CSI 0.9
    rCSI 2.5%
    PRS 57.9%
  • mucous neck cell CL0000651
    CSI 0.9
    rCSI 1.3%
    PRS 53.5%
  • small pre-B-II cell CL0000954
    CSI 0.9
    rCSI 0.8%
    PRS 63.7%
  • endothelial cell of uterus CL0009095
    CSI 0.9
    rCSI 6.5%
    PRS 67.1%
  • memory T cell CL0000813
    CSI 0.9
    rCSI 1.7%
    PRS 69.5%
  • T-helper 1 cell CL0000545
    CSI 0.9
    rCSI 1.6%
    PRS 67.1%
  • transit amplifying cell of small intestine CL0009012
    CSI 0.9
    rCSI 4.1%
    PRS 59.6%
  • granulocyte CL0000094
    CSI 1.0
    rCSI 1.5%
    PRS 48.6%
  • small intestine goblet cell CL1000495
    CSI 1.0
    rCSI 2.2%
    PRS 49.6%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 1.0
    rCSI 3.9%
    PRS 59.7%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 1.0
    rCSI 2.3%
    PRS 38.9%
  • conjunctival epithelial cell CL1000432
    CSI 1.0
    rCSI 1.6%
    PRS 40.5%
  • retinal rod cell CL0000604
    CSI 1.0
    rCSI 1.8%
    PRS 38.9%
  • lung endothelial cell CL1001567
    CSI 1.1
    rCSI 2.5%
    PRS 66.3%
  • glandular epithelial cell CL0000150
    CSI 1.1
    rCSI 2.9%
    PRS 62.8%
  • placental villous trophoblast CL2000060
    CSI 1.1
    rCSI 1.7%
    PRS 38.0%
  • group 3 innate lymphoid cell CL0001071
    CSI 1.1
    rCSI 0.8%
    PRS 42.9%
  • follicular B cell CL0000843
    CSI 1.1
    rCSI 4.1%
    PRS 74.4%
  • epithelial cell of proximal tubule CL0002306
    CSI 1.1
    rCSI 2.8%
    PRS 36.6%
  • professional antigen presenting cell CL0000145
    CSI 1.1
    rCSI 3.9%
    PRS 72.7%
  • respiratory hillock cell CL4030023
    CSI 1.2
    rCSI 2.1%
    PRS 55.7%
  • pulmonary artery endothelial cell CL1001568
    CSI 1.2
    rCSI 1.6%
    PRS 52.5%
  • retinal pigment epithelial cell CL0002586
    CSI 1.2
    rCSI 2.3%
    PRS 39.7%
  • natural T-regulatory cell CL0000903
    CSI 1.2
    rCSI 2.3%
    PRS 74.3%
  • endocrine cell CL0000163
    CSI 1.2
    rCSI 6.1%
    PRS 76.2%
  • dendritic cell, human CL0001056
    CSI 1.2
    rCSI 1.9%
    PRS 46.3%
  • foveolar cell of stomach CL0002179
    CSI 1.2
    rCSI 2.6%
    PRS 54.9%
  • enteroendocrine cell of small intestine CL0009006
    CSI 1.2
    rCSI 2.7%
    PRS 54.5%
  • basal cell of prostate epithelium CL0002341
    CSI 1.3
    rCSI 3.7%
    PRS 58.9%
  • OFF-bipolar cell CL0000750
    CSI 1.3
    rCSI 1.7%
    PRS 50.3%
  • retinal cone cell CL0000573
    CSI 1.3
    rCSI 2.1%
    PRS 31.7%
  • ionocyte CL0005006
    CSI 1.3
    rCSI 1.4%
    PRS 37.8%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 1.3
    rCSI 1.5%
    PRS 25.9%
  • lung macrophage CL1001603
    CSI 1.3
    rCSI 2.9%
    PRS 45.9%
  • squamous epithelial cell CL0000076
    CSI 1.3
    rCSI 3.1%
    PRS 45.7%
  • nasal mucosa goblet cell CL0002480
    CSI 1.3
    rCSI 1.5%
    PRS 50.6%
  • mature alpha-beta T cell CL0000791
    CSI 1.4
    rCSI 4.9%
    PRS 58.7%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 1.4
    rCSI 1.6%
    PRS 59.7%
  • muscle cell CL0000187
    CSI 1.4
    rCSI 2.8%
    PRS 62.3%
  • duct epithelial cell CL0000068
    CSI 1.4
    rCSI 2.0%
    PRS 42.6%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 1.4
    rCSI 2.6%
    PRS 55.7%
  • acinar cell CL0000622
    CSI 1.4
    rCSI 2.1%
    PRS 50.5%
  • promonocyte CL0000559
    CSI 1.5
    rCSI 2.5%
    PRS 49.0%
  • tracheobronchial serous cell CL0019001
    CSI 1.5
    rCSI 6.3%
    PRS 56.7%
  • alternatively activated macrophage CL0000890
    CSI 1.5
    rCSI 1.8%
    PRS 53.0%
  • alveolar type 1 fibroblast cell CL4028004
    CSI 1.5
    rCSI 1.6%
    PRS 43.7%
  • glioblast CL0000030
    CSI 1.5
    rCSI 2.4%
    PRS 34.5%
  • exhausted T cell CL0011025
    CSI 1.5
    rCSI 25.2%
    PRS 73.8%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 1.5
    rCSI 4.2%
    PRS 54.6%
  • inflammatory macrophage CL0000863
    CSI 1.5
    rCSI 2.6%
    PRS 65.9%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 1.5
    rCSI 2.7%
    PRS 48.1%
  • mature B cell CL0000785
    CSI 1.5
    rCSI 1.3%
    PRS 48.4%
  • glutamatergic neuron CL0000679
    CSI 1.5
    rCSI 3.2%
    PRS 35.7%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 1.6
    rCSI 1.1%
    PRS 49.3%
  • mature T cell CL0002419
    CSI 1.6
    rCSI 1.3%
    PRS 55.9%
  • tracheal goblet cell CL1000329
    CSI 1.7
    rCSI 3.7%
    PRS 59.9%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [CWC15](/details-gene/51503) is a protein-coding gene located on chromosome 11q21 that encodes the CWC15 spliceosome-associated protein homolog. As a core component of the spliceosome, specifically the Prp19/CDC5L complex ([Link](https://doi.org/10.1128/mcb.01505-09)), its primary function is central to mRNA processing, including pre-mRNA splicing ([R-HSA-72203](https://reactome.org/content/detail/R-HSA-72203)). Its expression profile reflects this fundamental role, with high significance observed in a diverse range of transcriptionally active cells. **Overall**, this includes immune cells such as [CD4-positive helper T cell](/details-cell/CL0000492) and various progenitor cells, as well as specialized secretory and structural cells like [fallopian tube secretory epithelial cell](/details-cell/CL4030006) and [chondrocyte](/details-cell/CL0000138), suggesting its critical importance in maintaining cellular function across multiple tissues. ## Cellular Roles and Expression Landscape The expression pattern of [CWC15](/details-gene/51503) highlights its role as a fundamental "housekeeping" gene, essential for cells with high metabolic and transcriptional demands. The **Overall** context reveals its highest significance in a broad spectrum of cell types rather than being restricted to a single lineage. Notably, [CWC15](/details-gene/51503) shows high significance in various components of the immune system. It is a top marker in [CD4-positive helper T cell](/details-cell/CL0000492), [alveolar macrophage](/details-cell/CL0000583), and progenitor cells like [common dendritic progenitor](/details-cell/CL0001029) and [hematopoietic precursor cell](/details-cell/CL0008001). This pattern is consistent with the extensive transcriptional remodeling and alternative splicing required for immune cell differentiation, activation, and effector function. Beyond the immune system, [CWC15](/details-gene/51503) is also highly significant in secretory epithelial cells, such as [fallopian tube secretory epithelial cell](/details-cell/CL4030006) and [pancreatic ductal cell](/details-cell/CL0002079). This suggests that robust splicing machinery is crucial for sustaining the high levels of protein synthesis and secretion characteristic of these cells. Furthermore, its prominence in [chondrocyte](/details-cell/CL0000138) and [vascular associated smooth muscle cell](/details-cell/CL0000359) indicates its importance in maintaining the complex transcriptional programs of structural tissues. The widespread, yet high-level, expression across these functionally diverse cells underscores the gene's essential role in the core nuclear machinery required for cellular viability and specialized function. ## Pathways and Molecular Function Functional annotations confirm the central role of [CWC15](/details-gene/51503) in RNA processing. The gene product is a key component of the [spliceosomal complex](/details-go/GO:0005681), particularly the [catalytic step 2 spliceosome](/details-go/GO:0071013) and the [Prp19 complex](/details-go/GO:0000974), which are essential for the removal of introns from pre-mRNA ([Link](https://doi.org/10.1038/nature21079)). This is reflected in its strong association with Gene Ontology (GO) terms such as [mrna splicing, via spliceosome](/details-go/GO:0000398) and [mrna cis splicing, via spliceosome](/details-go/GO:0045292). Reactome pathway analysis further reinforces this function, placing [CWC15](/details-gene/51503) in the core pathways of [Metabolism of rna](/details-reactome/R-HSA-8953854), [Mrna splicing - major pathway](/details-reactome/R-HSA-72163), and [Processing of capped intron-containing pre-mrna](/details-reactome/R-HSA-72203). Molecularly, it is annotated with [rna binding](/details-go/GO:0003723) and [protein binding](/details-go/GO:0005515) capabilities, which are required for its structural and functional integration into the multi-protein spliceosome machinery. The localization of the protein to the [nucleus](/details-go/GO:0005634), [nucleoplasm](/details-go/GO:0005654), and [nuclear speck](/details-go/GO:0016607) is fully consistent with its role in pre-mRNA processing. ## Research Directions The ubiquitous and essential nature of [CWC15](/details-gene/51503) suggests that its dysregulation could have profound cellular consequences. Future research should focus on how its activity is modulated in different cell states and its potential role in pathology. **Proposed Hypotheses:** 1. **Regulation of Immune Cell Activation:** Given its high significance in T cells and progenitor cells, it is hypothesized that [CWC15](/details-gene/51503) is indispensable for immune cell activation and differentiation by controlling the alternative splicing of key immunomodulatory transcripts (e.g., cytokine receptors, transcription factors, signaling molecules). 2. **Role in Malignancy:** Many cancers exhibit widespread alterations in splicing. It is hypothesized that cancer cells, particularly those of hematopoietic origin, may develop a dependency on high levels of [CWC15](/details-gene/51503) activity to maintain their proliferative state, a phenomenon known as "splicing addiction." **Key Experimental Approach:** To test the first hypothesis regarding the role of [CWC15](/details-gene/51503) in T cell function, a CRISPR-Cas9 or shRNA-mediated knockdown could be performed in primary human [CD4-positive helper T cell](/details-cell/CL0000492). Following knockdown, the cells would be activated via TCR stimulation (e.g., anti-CD3/CD28). The impact on T cell activation could be assessed by measuring proliferation (e.g., CFSE dilution assay), cytokine production (e.g., IL-2, IFN-gamma via ELISA), and the expression of activation markers (e.g., CD25, CD69 via flow cytometry). Deep RNA-sequencing of knockdown versus control cells would be crucial to identify specific differential splicing events in critical immune-related genes that are functionally downstream of [CWC15](/details-gene/51503). **Therapeutic Potential:** As a core component of the spliceosome, [CWC15](/details-gene/51503) presents a challenging therapeutic target due to the high risk of on-target toxicity in healthy, proliferating tissues. Direct systemic inhibition would likely be detrimental. However, in the context of cancer, where cells often become hyper-dependent on the splicing machinery, [CWC15](/details-gene/51503) could be a viable target for inhibition. Therapeutic strategies might involve developing small molecule inhibitors that selectively target cancer cells with a demonstrated "splicing addiction" or exploiting synthetic lethal interactions. Such an approach would require careful patient stratification based on tumor-specific splicing profiles.

Genular Protein ID: 4076398363

Symbol: CWC15_HUMAN

Name: Spliceosome-associated protein CWC15 homolog

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 10873569

Title: Characterization of five novel human genes in the 11q13-q22 region.

PubMed ID: 10873569

DOI: 10.1006/bbrc.2000.2910

PubMed ID: 11042152

Title: Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells.

PubMed ID: 11042152

DOI: 10.1101/gr.140200

PubMed ID: 10931946

Title: Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning.

PubMed ID: 10931946

DOI: 10.1073/pnas.160270997

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 20176811

Title: Molecular architecture of the human Prp19/CDC5L complex.

PubMed ID: 20176811

DOI: 10.1128/mcb.01505-09

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 28502770

Title: An Atomic Structure of the Human Spliceosome.

PubMed ID: 28502770

DOI: 10.1016/j.cell.2017.04.033

PubMed ID: 28076346

Title: Cryo-EM structure of a human spliceosome activated for step 2 of splicing.

PubMed ID: 28076346

DOI: 10.1038/nature21079

PubMed ID: 33509932

Title: Structure of the activated human minor spliceosome.

PubMed ID: 33509932

DOI: 10.1126/science.abg0879

Sequence Information:

  • Length: 229
  • Mass: 26624
  • Checksum: B21E6EEF46C4427C
  • Sequence:
  • MTTAARPTFE PARGGRGKGE GDLSQLSKQY SSRDLPSHTK IKYRQTTQDA PEEVRNRDFR 
    RELEERERAA AREKNRDRPT REHTTSSSVS KKPRLDQIPA ANLDADDPLT DEEDEDFEEE 
    SDDDDTAALL AELEKIKKER AEEQARKEQE QKAEEERIRM ENILSGNPLL NLTGPSQPQA 
    NFKVKRRWDD DVVFKNCAKG VDDQKKDKRF VNDTLRSEFH KKFMEKYIK