Details for: GARS1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 193.8343
Cell Significance Index: -30.1500 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 135.7023
Cell Significance Index: -34.4200 - Cell Name: embryonic stem cell (CL0002322)
Fold Change: 95.2548
Cell Significance Index: -39.2400 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 87.0748
Cell Significance Index: -41.1100 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 86.8662
Cell Significance Index: -35.2900 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 78.9097
Cell Significance Index: -40.5900 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 61.3393
Cell Significance Index: -41.1600 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 37.2613
Cell Significance Index: -35.5800 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 31.0149
Cell Significance Index: -38.2400 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 10.0835
Cell Significance Index: -39.7900 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 8.1069
Cell Significance Index: -24.9000 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 5.4373
Cell Significance Index: -11.9000 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 2.3971
Cell Significance Index: 165.7700 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.2653
Cell Significance Index: 253.8100 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 1.2631
Cell Significance Index: 75.8300 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 1.0990
Cell Significance Index: 178.7500 - Cell Name: lens fiber cell (CL0011004)
Fold Change: 0.9640
Cell Significance Index: 30.4900 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: 0.7923
Cell Significance Index: 11.9400 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.7835
Cell Significance Index: 92.4000 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.7813
Cell Significance Index: 10.6600 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.6655
Cell Significance Index: 238.7000 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 0.5686
Cell Significance Index: 16.3000 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: 0.5550
Cell Significance Index: 16.3000 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.5092
Cell Significance Index: 278.0700 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.5008
Cell Significance Index: 23.3500 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 0.4988
Cell Significance Index: 26.1900 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.4953
Cell Significance Index: 60.9100 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.4883
Cell Significance Index: 10.2200 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.4701
Cell Significance Index: 84.7500 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.4478
Cell Significance Index: 88.8600 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.4395
Cell Significance Index: 60.3600 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.4200
Cell Significance Index: 12.1000 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.3746
Cell Significance Index: 48.4000 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.3693
Cell Significance Index: 163.2600 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.3508
Cell Significance Index: 242.6600 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.3456
Cell Significance Index: 34.1900 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.3438
Cell Significance Index: 9.1800 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.3364
Cell Significance Index: 9.4000 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 0.2621
Cell Significance Index: 12.3200 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.2332
Cell Significance Index: 17.3800 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.2032
Cell Significance Index: 13.1100 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.1851
Cell Significance Index: 9.3500 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.1786
Cell Significance Index: 4.8600 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: 0.1702
Cell Significance Index: 1.8500 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.1425
Cell Significance Index: 10.0800 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.0991
Cell Significance Index: 16.9200 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.0919
Cell Significance Index: 17.4900 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.0800
Cell Significance Index: 147.6100 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.0796
Cell Significance Index: 71.8600 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.0779
Cell Significance Index: 9.9800 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.0735
Cell Significance Index: 3.8200 - Cell Name: extravillous trophoblast (CL0008036)
Fold Change: 0.0660
Cell Significance Index: 0.4100 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0561
Cell Significance Index: 76.2400 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0479
Cell Significance Index: 90.1300 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.0454
Cell Significance Index: 69.8500 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: 0.0344
Cell Significance Index: 26.0500 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0084
Cell Significance Index: 5.3300 - Cell Name: granulosa cell (CL0000501)
Fold Change: 0.0010
Cell Significance Index: 0.0200 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0181
Cell Significance Index: -8.2000 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.0262
Cell Significance Index: -1.6500 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0276
Cell Significance Index: -20.2100 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.0392
Cell Significance Index: -2.0400 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0417
Cell Significance Index: -30.8600 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0457
Cell Significance Index: -4.6700 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0588
Cell Significance Index: -8.5500 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0661
Cell Significance Index: -37.3100 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0698
Cell Significance Index: -43.5900 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.0768
Cell Significance Index: -2.4600 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0861
Cell Significance Index: -6.6100 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.0871
Cell Significance Index: -4.8900 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.1077
Cell Significance Index: -7.2500 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: -0.1185
Cell Significance Index: -5.3700 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1209
Cell Significance Index: -13.8600 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1225
Cell Significance Index: -35.2600 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.1518
Cell Significance Index: -2.5400 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1961
Cell Significance Index: -41.3000 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.2145
Cell Significance Index: -5.4800 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.2299
Cell Significance Index: -10.1700 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.2396
Cell Significance Index: -4.9700 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.2612
Cell Significance Index: -2.4100 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.2778
Cell Significance Index: -10.5200 - Cell Name: endothelial cell of placenta (CL0009092)
Fold Change: -0.3360
Cell Significance Index: -2.0300 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3367
Cell Significance Index: -35.0600 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.3555
Cell Significance Index: -10.1500 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.3689
Cell Significance Index: -12.8200 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.3930
Cell Significance Index: -7.6700 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.4193
Cell Significance Index: -7.1900 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4338
Cell Significance Index: -34.3600 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.4367
Cell Significance Index: -17.8900 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: -0.4718
Cell Significance Index: -8.7200 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.4914
Cell Significance Index: -30.1300 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.5461
Cell Significance Index: -11.6300 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.5563
Cell Significance Index: -14.3000 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.5637
Cell Significance Index: -5.8400 - Cell Name: germ cell (CL0000586)
Fold Change: -0.6072
Cell Significance Index: -4.5800 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.6262
Cell Significance Index: -16.7500 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.6545
Cell Significance Index: -14.1800 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: -0.6813
Cell Significance Index: -7.7400 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.6967
Cell Significance Index: -20.5200 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.7279
Cell Significance Index: -23.8300
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3550039907
Symbol: GARS_HUMAN
Name: Glycine--tRNA ligase
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7962006
Title: Human glycyl-tRNA synthetase. Wide divergence of primary structure from bacterial counterpart and species-specific aminoacylation.
PubMed ID: 7962006
PubMed ID: 7753621
Title: Cloning, sequencing and bacterial expression of human glycine tRNA synthetase.
PubMed ID: 7753621
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 12853948
PubMed ID: 12690205
Title: Human chromosome 7: DNA sequence and biology.
PubMed ID: 12690205
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7961834
Title: Primary structure and functional expression of human glycyl-tRNA synthetase, an autoantigen in myositis.
PubMed ID: 7961834
PubMed ID: 12690580
Title: Glycyl tRNA synthetase mutations in Charcot-Marie-Tooth disease type 2D and distal spinal muscular atrophy type V.
PubMed ID: 12690580
DOI: 10.1086/375039
PubMed ID: 14654843
Title: Proteomic characterization of the human centrosome by protein correlation profiling.
PubMed ID: 14654843
DOI: 10.1038/nature02166
PubMed ID: 17035524
Title: Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons.
PubMed ID: 17035524
PubMed ID: 17529987
Title: Cytoplasmic and mitochondrial protein translation in axonal and dendritic terminal arborization.
PubMed ID: 17529987
DOI: 10.1038/nn1910
PubMed ID: 19608861
Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.
PubMed ID: 19608861
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 25168514
Title: Impaired function is a common feature of neuropathy-associated glycyl-tRNA synthetase mutations.
PubMed ID: 25168514
DOI: 10.1002/humu.22681
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 25944712
Title: N-terminome analysis of the human mitochondrial proteome.
PubMed ID: 25944712
PubMed ID: 26327585
Title: Elaborate uORF/IRES features control expression and localization of human glycyl-tRNA synthetase.
PubMed ID: 26327585
PubMed ID: 32181591
Title: GARS-related disease in infantile spinal muscular atrophy: Implications for diagnosis and treatment.
PubMed ID: 32181591
DOI: 10.1002/ajmg.a.61544
PubMed ID: 17544401
Title: Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy.
PubMed ID: 17544401
PubMed ID: 17545306
Title: Long-range structural effects of a Charcot-Marie-Tooth disease-causing mutation in human glycyl-tRNA synthetase.
PubMed ID: 17545306
PubMed ID: 19710017
Title: Crystal structures and biochemical analyses suggest a unique mechanism and role for human glycyl-tRNA synthetase in Ap4A homeostasis.
PubMed ID: 19710017
PubMed ID: 24898252
Title: Cocrystal structures of glycyl-tRNA synthetase in complex with tRNA suggest multiple conformational states in glycylation.
PubMed ID: 24898252
PubMed ID: 26797133
Title: Large Conformational Changes of Insertion 3 in Human Glycyl-tRNA Synthetase (hGlyRS) during Catalysis.
PubMed ID: 26797133
PubMed ID: 27261259
Title: Crystal Structure of the Wild-Type Human GlyRS Bound with tRNA(Gly) in a Productive Conformation.
PubMed ID: 27261259
PubMed ID: 17101916
Title: Severe childhood SMA and axonal CMT due to anticodon binding domain mutations in the GARS gene.
PubMed ID: 17101916
PubMed ID: 17663003
Title: Further evidence for genetic heterogeneity of distal HMN type V, CMT2 with predominant hand involvement and Silver syndrome.
PubMed ID: 17663003
PubMed ID: 20169446
Title: Charcot-Marie-Tooth disease type 2D with a novel glycyl-tRNA synthetase gene (GARS) mutation.
PubMed ID: 20169446
PubMed ID: 23279345
Title: Two novel mutations of GARS in Korean families with distal hereditary motor neuropathy type V.
PubMed ID: 23279345
PubMed ID: 24627108
Title: Whole-exome sequencing in patients with inherited neuropathies: outcome and challenges.
PubMed ID: 24627108
PubMed ID: 24604904
Title: Application of whole exome sequencing in undiagnosed inherited polyneuropathies.
PubMed ID: 24604904
PubMed ID: 26244500
Title: Two novel de novo gars mutations cause early-onset axonal Charcot-Marie-tooth disease.
PubMed ID: 26244500
PubMed ID: 26503042
Title: CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase.
PubMed ID: 26503042
DOI: 10.1038/nature15510
PubMed ID: 26789244
Title: Corrigendum: CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase.
PubMed ID: 26789244
DOI: 10.1038/nature16499
PubMed ID: 28675565
Title: Compound heterozygosity for loss-of-function GARS variants results in a multisystem developmental syndrome that includes severe growth retardation.
PubMed ID: 28675565
DOI: 10.1002/humu.23287
PubMed ID: 28594869
Title: Compound heterozygous mutations in glycyl-tRNA synthetase (GARS) cause mitochondrial respiratory chain dysfunction.
PubMed ID: 28594869
PubMed ID: 31173493
Title: A novel mutation in the GARS gene in a Malian family with Charcot-Marie-Tooth disease.
PubMed ID: 31173493
DOI: 10.1002/mgg3.782
Sequence Information:
- Length: 739
- Mass: 83166
- Checksum: E4C001CEBF985C59
- Sequence:
MPSPRPVLLR GARAALLLLL PPRLLARPSL LLRRSLSAAS CPPISLPAAA SRSSMDGAGA EEVLAPLRLA VRQQGDLVRK LKEDKAPQVD VDKAVAELKA RKRVLEAKEL ALQPKDDIVD RAKMEDTLKR RFFYDQAFAI YGGVSGLYDF GPVGCALKNN IIQTWRQHFI QEEQILEIDC TMLTPEPVLK TSGHVDKFAD FMVKDVKNGE CFRADHLLKA HLQKLMSDKK CSVEKKSEME SVLAQLDNYG QQELADLFVN YNVKSPITGN DLSPPVSFNL MFKTFIGPGG NMPGYLRPET AQGIFLNFKR LLEFNQGKLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE IEHFVDPSEK DHPKFQNVAD LHLYLYSAKA QVSGQSARKM RLGDAVEQGV INNTVLGYFI GRIYLYLTKV GISPDKLRFR QHMENEMAHY ACDCWDAESK TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEPK TVNVVQFEPS KGAIGKAYKK DAKLVMEYLA ICDECYITEM EMLLNEKGEF TIETEGKTFQ LTKDMINVKR FQKTLYVEEV VPNVIEPSFG LGRIMYTVFE HTFHVREGDE QRTFFSFPAV VAPFKCSVLP LSQNQEFMPF VKELSEALTR HGVSHKVDDS SGSIGRRYAR TDEIGVAFGV TIDFDTVNKT PHTATLRDRD SMRQIRAEIS ELPSIVQDLA NGNITWADVE ARYPLFEGQE TGKKETIEE
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.