Details for: POLR2F

Gene ID: 5435

Symbol: POLR2F

Ensembl ID: ENSG00000100142

Description: RNA polymerase II, I and III subunit F

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 311.6135
    Cell Significance Index: -48.4700
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 212.4242
    Cell Significance Index: -53.8800
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 135.3038
    Cell Significance Index: -63.8800
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 128.6008
    Cell Significance Index: -52.2500
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 117.6161
    Cell Significance Index: -60.5000
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 54.8315
    Cell Significance Index: -52.3500
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 48.8095
    Cell Significance Index: -60.1800
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 16.2720
    Cell Significance Index: -64.2100
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 15.7791
    Cell Significance Index: -42.2700
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 15.5334
    Cell Significance Index: -47.7100
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 8.6037
    Cell Significance Index: -18.8300
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 2.2707
    Cell Significance Index: 18.1300
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 2.1725
    Cell Significance Index: 101.2900
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 2.0869
    Cell Significance Index: 98.0800
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 1.8296
    Cell Significance Index: 48.1100
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 1.7120
    Cell Significance Index: 35.8400
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 1.5845
    Cell Significance Index: 865.3200
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 1.5067
    Cell Significance Index: 206.9100
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 1.2593
    Cell Significance Index: 13.6900
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 1.2280
    Cell Significance Index: 157.4200
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 1.2260
    Cell Significance Index: 11.2900
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 1.1903
    Cell Significance Index: 153.7800
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 1.0612
    Cell Significance Index: 130.4900
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 1.0392
    Cell Significance Index: 459.4500
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 1.0075
    Cell Significance Index: 181.6200
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 0.9945
    Cell Significance Index: 74.1200
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.8867
    Cell Significance Index: 144.2100
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.8446
    Cell Significance Index: 22.9900
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.8443
    Cell Significance Index: 59.7100
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.7513
    Cell Significance Index: 269.4800
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.7314
    Cell Significance Index: 25.4200
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.6361
    Cell Significance Index: 75.0100
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.6012
    Cell Significance Index: 120.6000
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.5348
    Cell Significance Index: 14.2800
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.4740
    Cell Significance Index: 10.2700
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.4452
    Cell Significance Index: 28.7300
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 0.4176
    Cell Significance Index: 11.9700
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.4123
    Cell Significance Index: 21.4200
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.3426
    Cell Significance Index: 15.5300
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.3295
    Cell Significance Index: 17.3000
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.3262
    Cell Significance Index: 55.7000
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.3235
    Cell Significance Index: 9.5000
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.2900
    Cell Significance Index: 55.1800
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.2832
    Cell Significance Index: 28.0100
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 0.2452
    Cell Significance Index: 6.5600
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.1866
    Cell Significance Index: 2.1200
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.1774
    Cell Significance Index: 35.2000
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1524
    Cell Significance Index: 4.3900
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0812
    Cell Significance Index: 61.4600
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0509
    Cell Significance Index: 95.7700
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.0269
    Cell Significance Index: 0.4500
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.0139
    Cell Significance Index: 21.4700
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0020
    Cell Significance Index: -1.4400
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0054
    Cell Significance Index: -4.0300
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0102
    Cell Significance Index: -18.8900
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: -0.0184
    Cell Significance Index: -16.6100
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0418
    Cell Significance Index: -26.1300
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0469
    Cell Significance Index: -63.7800
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0491
    Cell Significance Index: -31.1800
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0505
    Cell Significance Index: -5.1600
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0694
    Cell Significance Index: -39.1200
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0927
    Cell Significance Index: -42.1000
  • Cell Name: peg cell (CL4033014)
    Fold Change: -0.1091
    Cell Significance Index: -2.5200
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.1258
    Cell Significance Index: -6.3600
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.1417
    Cell Significance Index: -3.6200
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1453
    Cell Significance Index: -16.6500
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.1457
    Cell Significance Index: -8.9600
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.1479
    Cell Significance Index: -31.1600
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.1730
    Cell Significance Index: -49.7700
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.1844
    Cell Significance Index: -5.9000
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.2043
    Cell Significance Index: -23.8100
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.2626
    Cell Significance Index: -7.3400
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.2894
    Cell Significance Index: -10.1700
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.3139
    Cell Significance Index: -45.6300
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.3427
    Cell Significance Index: -39.1200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.3832
    Cell Significance Index: -25.7700
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -0.4144
    Cell Significance Index: -6.2100
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.4267
    Cell Significance Index: -32.7500
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: -0.4411
    Cell Significance Index: -7.8000
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: -0.4685
    Cell Significance Index: -29.5300
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.5243
    Cell Significance Index: -54.5900
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.5299
    Cell Significance Index: -41.9700
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.6303
    Cell Significance Index: -35.3700
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.7135
    Cell Significance Index: -29.2400
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.7207
    Cell Significance Index: -31.8800
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.7361
    Cell Significance Index: -13.6100
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -0.7800
    Cell Significance Index: -40.6300
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: -0.7859
    Cell Significance Index: -10.0700
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.8831
    Cell Significance Index: -26.0100
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.9119
    Cell Significance Index: -34.5300
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -1.0302
    Cell Significance Index: -63.1600
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -1.1089
    Cell Significance Index: -15.1300
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -1.2256
    Cell Significance Index: -44.9900
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -1.2601
    Cell Significance Index: -32.3900
  • Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
    Fold Change: -1.2715
    Cell Significance Index: -7.8300
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: -1.2807
    Cell Significance Index: -13.2600
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: -1.3439
    Cell Significance Index: -36.0100
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: -1.4242
    Cell Significance Index: -40.6400
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -1.4296
    Cell Significance Index: -50.0800
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -1.4696
    Cell Significance Index: -32.1800

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** 1. **Function**: The POLR2F gene is a subunit of the RNA polymerase II complex, which is responsible for transcribing protein-coding genes in eukaryotic cells. 2. **Expression**: The gene is significantly expressed in various cell types, including those mentioned above. 3. **Subcellular localization**: The POLR2F protein is localized to the nucleus. 4. **Post-translational modifications**: The POLR2F protein undergoes phosphorylation, which is essential for its function. **Pathways and Functions** The POLR2F gene is involved in various cellular pathways, including: 1. **Transcription**: The POLR2F gene is essential for transcribing protein-coding genes in eukaryotic cells. 2. **Transcriptional regulation**: The POLR2F gene is involved in regulating the expression of genes involved in various cellular processes. 3. **DNA repair**: The POLR2F gene plays a role in maintaining genome stability by regulating DNA repair processes. 4. **Cell cycle regulation**: The POLR2F gene is involved in regulating the cell cycle, particularly during the S phase. 5. **Immune system regulation**: The POLR2F gene is involved in regulating the immune system, particularly during the response to viral infections. **Clinical Significance** Dysregulation of the POLR2F gene has been implicated in several diseases, including: 1. **Cancer**: The POLR2F gene is often overexpressed in various types of cancer, including breast, lung, and colon cancer. 2. **Neurological disorders**: The POLR2F gene has been implicated in various neurological disorders, including Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis (ALS). 3. **Infectious diseases**: The POLR2F gene is involved in regulating the expression of genes involved in viral infections, such as HIV-1. 4. **Developmental disorders**: The POLR2F gene is involved in regulating the expression of genes involved in embryonic development, particularly during the formation of the nervous system. In conclusion, the POLR2F gene is a crucial component of the RNA polymerase II complex, which plays a central role in transcribing protein-coding genes in eukaryotic cells. Its dysregulation has been implicated in several diseases, including cancer, neurological disorders, and infectious diseases. Further research is needed to fully understand the role of the POLR2F gene in these diseases and to develop therapeutic strategies to target this gene.

Genular Protein ID: 3401093711

Symbol: RPAB2_HUMAN

Name: DNA-directed RNA polymerases I, II, and III subunit RPABC2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 7803819

Title: A 14.4 KDa acidic subunit of human RNA polymerase II with a putative leucine-zipper.

PubMed ID: 7803819

DOI: 10.3109/10425179409020860

PubMed ID: 8786150

Title: Genomic structure of the RNA polymerase II small subunit (hRPB14.4) locus (POLRF) and mapping to 22q13.1 by sequence identity.

PubMed ID: 8786150

DOI: 10.1006/geno.1996.0312

PubMed ID: 15461802

Title: A genome annotation-driven approach to cloning the human ORFeome.

PubMed ID: 15461802

DOI: 10.1186/gb-2004-5-10-r84

PubMed ID: 10591208

Title: The DNA sequence of human chromosome 22.

PubMed ID: 10591208

DOI: 10.1038/990031

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 9852112

Title: Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes.

PubMed ID: 9852112

DOI: 10.1074/jbc.273.51.34444

PubMed ID: 20413673

Title: Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells.

PubMed ID: 20413673

DOI: 10.1101/gr.101337.109

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 10542096

Title: Solution structure of the hRPABC14.4 subunit of human RNA polymerases.

PubMed ID: 10542096

DOI: 10.1038/14923

PubMed ID: 27193682

Title: Near-atomic resolution visualization of human transcription promoter opening.

PubMed ID: 27193682

DOI: 10.1038/nature17970

PubMed ID: 30190596

Title: Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1.

PubMed ID: 30190596

DOI: 10.1038/s41594-018-0118-5

PubMed ID: 33335104

Title: Structure of human RNA polymerase III.

PubMed ID: 33335104

DOI: 10.1038/s41467-020-20262-5

PubMed ID: 34671025

Title: Structure of the human RNA polymerase I elongation complex.

PubMed ID: 34671025

DOI: 10.1038/s41421-021-00335-5

PubMed ID: 33674783

Title: Structure of human RNA polymerase III elongation complex.

PubMed ID: 33674783

DOI: 10.1038/s41422-021-00472-2

PubMed ID: 34675218

Title: Structural insights into RNA polymerase III-mediated transcription termination through trapping poly-deoxythymidine.

PubMed ID: 34675218

DOI: 10.1038/s41467-021-26402-9

PubMed ID: 33558764

Title: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states.

PubMed ID: 33558764

DOI: 10.1038/s41594-020-00555-5

PubMed ID: 34887565

Title: Cryo-EM structures of human RNA polymerase I.

PubMed ID: 34887565

DOI: 10.1038/s41594-021-00693-4

PubMed ID: 33558766

Title: Structural insights into transcriptional regulation of human RNA polymerase III.

PubMed ID: 33558766

DOI: 10.1038/s41594-021-00557-x

PubMed ID: 36271492

Title: The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans.

PubMed ID: 36271492

DOI: 10.26508/lsa.202201568

PubMed ID: 16959974

Title: The consensus coding sequences of human breast and colorectal cancers.

PubMed ID: 16959974

DOI: 10.1126/science.1133427

Sequence Information:

  • Length: 127
  • Mass: 14478
  • Checksum: 6362B0D7EB3F0921
  • Sequence:
  • MSDNEDNFDG DDFDDVEEDE GLDDLENAEE EGQENVEILP SGERPQANQK RITTPYMTKY 
    ERARVLGTRA LQIAMCAPVM VELEGETDPL LIAMKELKAR KIPIIIRRYL PDGSYEDWGV 
    DELIITD

Genular Protein ID: 1771510502

Symbol: B0QYL9_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 10591208

Title: The DNA sequence of human chromosome 22.

PubMed ID: 10591208

DOI: 10.1038/990031

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 18477386

Title: Finishing the finished human chromosome 22 sequence.

PubMed ID: 18477386

DOI: 10.1186/gb-2008-9-5-r78

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

Sequence Information:

  • Length: 158
  • Mass: 17574
  • Checksum: 066D69F202A354E3
  • Sequence:
  • MSDNEDNFDG DDFDDVEEDE GLDDLENAEE EGQENVEILP SGERPQANQK RITTPYMTKY 
    ERARVLGTRA LQIAMCAPVM VELEGETDPL LIAMKELNAR SASEPPGEEP PWMDRGTRDE 
    HLPSCPGCPA VASNTRCCPP AACLPGISLS RRRRLREE

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.