Details for: PSMC2

Gene ID: 5701

Symbol: PSMC2

Ensembl ID: ENSG00000161057

Description: proteasome 26S subunit, ATPase 2

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 194.9272
    Cell Significance Index: -30.3200
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 133.7311
    Cell Significance Index: -33.9200
  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 101.7362
    Cell Significance Index: -41.9100
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 92.4548
    Cell Significance Index: -43.6500
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 88.7123
    Cell Significance Index: -36.0400
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 79.7457
    Cell Significance Index: -41.0200
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 65.3183
    Cell Significance Index: -43.8300
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 38.2721
    Cell Significance Index: -36.5400
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 33.2129
    Cell Significance Index: -40.9500
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 10.8970
    Cell Significance Index: -43.0000
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 10.6202
    Cell Significance Index: -28.4500
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 10.6041
    Cell Significance Index: -32.5700
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 1.6926
    Cell Significance Index: 1528.3300
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 1.1186
    Cell Significance Index: 181.9300
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.9475
    Cell Significance Index: 25.3000
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.9066
    Cell Significance Index: 181.8600
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.7499
    Cell Significance Index: 102.9800
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.7360
    Cell Significance Index: 25.5800
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.7337
    Cell Significance Index: 324.4000
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 0.7286
    Cell Significance Index: 15.2500
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: 0.6697
    Cell Significance Index: 17.9500
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.6676
    Cell Significance Index: 132.4800
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.6335
    Cell Significance Index: 39.9300
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.6157
    Cell Significance Index: 75.7100
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.5943
    Cell Significance Index: 42.0300
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.5856
    Cell Significance Index: 75.0700
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.5833
    Cell Significance Index: 105.1600
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.5711
    Cell Significance Index: 9.5600
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.5078
    Cell Significance Index: 65.6000
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 0.4860
    Cell Significance Index: 22.6600
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.4488
    Cell Significance Index: 245.1000
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 0.4424
    Cell Significance Index: 32.9700
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.4161
    Cell Significance Index: 12.2200
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.4034
    Cell Significance Index: 10.9800
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.3720
    Cell Significance Index: 8.0600
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 0.3692
    Cell Significance Index: 17.3500
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 0.3427
    Cell Significance Index: 9.0100
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.3390
    Cell Significance Index: 121.6000
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.3349
    Cell Significance Index: 39.5000
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.3342
    Cell Significance Index: 17.3600
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.3295
    Cell Significance Index: 22.7900
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.2175
    Cell Significance Index: 11.4200
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.2131
    Cell Significance Index: 13.7500
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 0.1972
    Cell Significance Index: 10.2700
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.1925
    Cell Significance Index: 36.6300
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1685
    Cell Significance Index: 4.8600
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.1188
    Cell Significance Index: 11.7500
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.1051
    Cell Significance Index: 17.9500
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.0696
    Cell Significance Index: 48.1200
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: 0.0638
    Cell Significance Index: 0.7600
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: 0.0402
    Cell Significance Index: 3.0900
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 0.0386
    Cell Significance Index: 1.0800
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0285
    Cell Significance Index: 53.5800
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0087
    Cell Significance Index: 6.5700
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0012
    Cell Significance Index: -0.9000
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0034
    Cell Significance Index: -2.1500
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0053
    Cell Significance Index: -3.9100
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0118
    Cell Significance Index: -7.3700
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0119
    Cell Significance Index: -21.9200
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0120
    Cell Significance Index: -18.5500
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0237
    Cell Significance Index: -32.2300
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0267
    Cell Significance Index: -12.1400
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.0336
    Cell Significance Index: -1.1800
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0393
    Cell Significance Index: -4.0100
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0444
    Cell Significance Index: -25.0300
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: -0.0790
    Cell Significance Index: -3.5800
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0901
    Cell Significance Index: -18.9800
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1099
    Cell Significance Index: -12.6000
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: -0.1223
    Cell Significance Index: -1.3300
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.1288
    Cell Significance Index: -37.0700
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.1527
    Cell Significance Index: -17.8000
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.1537
    Cell Significance Index: -9.4500
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.1666
    Cell Significance Index: -24.2200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.1716
    Cell Significance Index: -11.5400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.1994
    Cell Significance Index: -11.1900
  • Cell Name: type I muscle cell (CL0002211)
    Fold Change: -0.2070
    Cell Significance Index: -5.0500
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.2105
    Cell Significance Index: -24.0300
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -0.2173
    Cell Significance Index: -6.2300
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.2521
    Cell Significance Index: -4.3200
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.2584
    Cell Significance Index: -6.6000
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: -0.2944
    Cell Significance Index: -5.7500
  • Cell Name: kidney cell (CL1000497)
    Fold Change: -0.3119
    Cell Significance Index: -2.4900
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.3550
    Cell Significance Index: -7.5600
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.3725
    Cell Significance Index: -11.9300
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.3801
    Cell Significance Index: -30.1000
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.3906
    Cell Significance Index: -10.0400
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.3973
    Cell Significance Index: -41.3700
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -0.4489
    Cell Significance Index: -6.1300
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.4678
    Cell Significance Index: -20.6900
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: -0.4746
    Cell Significance Index: -4.3700
  • Cell Name: peg cell (CL4033014)
    Fold Change: -0.5341
    Cell Significance Index: -12.3400
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.5522
    Cell Significance Index: -20.9100
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.5546
    Cell Significance Index: -14.8400
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.7019
    Cell Significance Index: -43.0300
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: -0.7843
    Cell Significance Index: -13.8600
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.8109
    Cell Significance Index: -20.2700
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.8386
    Cell Significance Index: -15.5000
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.8471
    Cell Significance Index: -24.9500
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: -0.8648
    Cell Significance Index: -24.6800
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.8886
    Cell Significance Index: -28.3000

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** 1. **Proteasome subunit**: PSMC2 is a subunit of the 26S proteasome complex, which is responsible for the degradation of ubiquitinated proteins. 2. **ATPase activity**: PSMC2 possesses ATPase activity, which is necessary for the unfolding and translocation of protein substrates into the proteasome. 3. **Significant expression**: PSMC2 is significantly expressed in multiple cell types, including hematopoietic cells, neural cells, and trophoblasts. 4. **Involvement in cellular processes**: PSMC2 is involved in various cellular processes, including immune system regulation, apoptosis, and cell cycle progression. **Pathways and Functions** 1. **Adaptive immune system**: PSMC2 is involved in the regulation of the adaptive immune system, particularly in the processing and presentation of antigens to T-cells. 2. **Antigen processing and presentation**: PSMC2 is essential for the degradation of ubiquitinated proteins, which are then presented to T-cells via MHC class I molecules. 3. **Apoptosis**: PSMC2 plays a role in regulating apoptosis by degrading pro-apoptotic proteins, such as Bcl-2 family members. 4. **Cell cycle regulation**: PSMC2 is involved in the regulation of the cell cycle, particularly in the G2/M phase, by degrading proteins that inhibit cell cycle progression. 5. **Innate immune system**: PSMC2 is also involved in the regulation of the innate immune system, particularly in the processing and presentation of antigens to dendritic cells. **Clinical Significance** 1. **Autoimmune diseases**: Alterations in PSMC2 expression have been implicated in various autoimmune diseases, including multiple sclerosis and rheumatoid arthritis. 2. **Cancer**: PSMC2 is overexpressed in several types of cancer, including breast, lung, and colon cancer, and is associated with poor prognosis. 3. **Neurodegenerative diseases**: PSMC2 has been implicated in the regulation of neurodegenerative diseases, such as Alzheimer's and Parkinson's disease. 4. **Infectious diseases**: PSMC2 is involved in the regulation of the immune response to infectious diseases, such as HIV and tuberculosis. In conclusion, the PSMC2 gene plays a crucial role in regulating various cellular processes, including the adaptive immune system, apoptosis, and cell cycle progression. Its dysregulation has been implicated in various diseases, including autoimmune diseases, cancer, and neurodegenerative diseases. Further research is needed to fully understand the mechanisms by which PSMC2 regulates cellular processes and its clinical significance.

Genular Protein ID: 3495332222

Symbol: PRS7_HUMAN

Name: 26S proteasome regulatory subunit 7

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 1377363

Title: New human gene encoding a positive modulator of HIV Tat-mediated transactivation.

PubMed ID: 1377363

DOI: 10.1038/357700a0

PubMed ID: 12880961

Title: Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma.

PubMed ID: 12880961

DOI: 10.1016/s0304-3835(03)00085-5

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 12853948

Title: The DNA sequence of human chromosome 7.

PubMed ID: 12853948

DOI: 10.1038/nature01782

PubMed ID: 12690205

Title: Human chromosome 7: DNA sequence and biology.

PubMed ID: 12690205

DOI: 10.1126/science.1083423

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8500623

Title: Peptide sequencing identifies MSS1, a modulator of HIV Tat-mediated transactivation, as subunit 7 of the 26 S protease.

PubMed ID: 8500623

DOI: 10.1016/0014-5793(93)81356-5

PubMed ID: 12665801

Title: Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.

PubMed ID: 12665801

DOI: 10.1038/nbt810

PubMed ID: 1317798

Title: Demonstration that a human 26S proteolytic complex consists of a proteasome and multiple associated protein components and hydrolyzes ATP and ubiquitin-ligated proteins by closely linked mechanisms.

PubMed ID: 1317798

DOI: 10.1111/j.1432-1033.1992.tb16961.x

PubMed ID: 9295362

Title: HEC binds to the seventh regulatory subunit of the 26 S proteasome and modulates the proteolysis of mitotic cyclins.

PubMed ID: 9295362

DOI: 10.1074/jbc.272.38.24081

PubMed ID: 10409732

Title: Hec1p, an evolutionarily conserved coiled-coil protein, modulates chromosome segregation through interaction with SMC proteins.

PubMed ID: 10409732

DOI: 10.1128/mcb.19.8.5417

PubMed ID: 14654843

Title: Proteomic characterization of the human centrosome by protein correlation profiling.

PubMed ID: 14654843

DOI: 10.1038/nature02166

PubMed ID: 15340068

Title: Sequestosome 1/p62 is a polyubiquitin chain binding protein involved in ubiquitin proteasome degradation.

PubMed ID: 15340068

DOI: 10.1128/mcb.24.18.8055-8068.2004

PubMed ID: 15831487

Title: Proteasomal ATPase-associated factor 1 negatively regulates proteasome activity by interacting with proteasomal ATPases.

PubMed ID: 15831487

DOI: 10.1128/mcb.25.9.3842-3853.2005

PubMed ID: 17323924

Title: Mass spectrometric characterization of the affinity-purified human 26S proteasome complex.

PubMed ID: 17323924

DOI: 10.1021/bi061994u

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22078707

Title: TRIM5alpha associates with proteasomal subunits in cells while in complex with HIV-1 virions.

PubMed ID: 22078707

DOI: 10.1186/1742-4690-8-93

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 24811749

Title: Autoubiquitination of the 26S proteasome on Rpn13 regulates breakdown of ubiquitin conjugates.

PubMed ID: 24811749

DOI: 10.1002/embj.201386906

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 28539385

Title: Phosphatase UBLCP1 controls proteasome assembly.

PubMed ID: 28539385

DOI: 10.1098/rsob.170042

PubMed ID: 27428775

Title: An atomic structure of the human 26S proteasome.

PubMed ID: 27428775

DOI: 10.1038/nsmb.3273

PubMed ID: 27342858

Title: Structure of the human 26S proteasome at a resolution of 3.9 Aa.

PubMed ID: 27342858

DOI: 10.1073/pnas.1608050113

Sequence Information:

  • Length: 433
  • Mass: 48634
  • Checksum: 85FD95F6DF7A3E84
  • Sequence:
  • MPDYLGADQR KTKEDEKDDK PIRALDEGDI ALLKTYGQST YSRQIKQVED DIQQLLKKIN 
    ELTGIKESDT GLAPPALWDL AADKQTLQSE QPLQVARCTK IINADSEDPK YIINVKQFAK 
    FVVDLSDQVA PTDIEEGMRV GVDRNKYQIH IPLPPKIDPT VTMMQVEEKP DVTYSDVGGC 
    KEQIEKLREV VETPLLHPER FVNLGIEPPK GVLLFGPPGT GKTLCARAVA NRTDACFIRV 
    IGSELVQKYV GEGARMVREL FEMARTKKAC LIFFDEIDAI GGARFDDGAG GDNEVQRTML 
    ELINQLDGFD PRGNIKVLMA TNRPDTLDPA LMRPGRLDRK IEFSLPDLEG RTHIFKIHAR 
    SMSVERDIRF ELLARLCPNS TGAEIRSVCT EAGMFAIRAR RKIATEKDFL EAVNKVIKSY 
    AKFSATPRYM TYN

Genular Protein ID: 3320242577

Symbol: B7Z571_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 141
  • Mass: 15796
  • Checksum: E5167FDC01DDACCA
  • Sequence:
  • MPDYLGADQR KTKEDEKDDK PIRALDEGDI ASLKTYGQST YSRQIKQVED DIQQLLKKIN 
    ELTGIKESDT GLAPPALWDL AADKQTLQSE QPLQVARCTK IINADSEDPK YIINVKQFAK 
    FVVDLSDQVA PTDIEEGMRV G

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.