Details for: RPS13

Gene ID: 6207

Symbol: RPS13

Ensembl ID: ENSG00000110700

Description: ribosomal protein S13

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 688.5099
    Cell Significance Index: -283.6300
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 644.9610
    Cell Significance Index: -262.0200
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 582.5711
    Cell Significance Index: -275.0500
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 562.5745
    Cell Significance Index: -289.3800
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 412.1474
    Cell Significance Index: -276.5600
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 279.7612
    Cell Significance Index: -267.1000
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 42.0664
    Cell Significance Index: -112.6900
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 16.5524
    Cell Significance Index: 422.8600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: 15.7838
    Cell Significance Index: 1612.3200
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 15.2366
    Cell Significance Index: 407.5700
  • Cell Name: theca cell (CL0000503)
    Fold Change: 13.9982
    Cell Significance Index: 82.2400
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: 13.5012
    Cell Significance Index: 172.9100
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 12.1965
    Cell Significance Index: 573.2200
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 11.2071
    Cell Significance Index: 294.6900
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: 10.9848
    Cell Significance Index: 194.1200
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 10.5307
    Cell Significance Index: 301.8700
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 9.3385
    Cell Significance Index: 106.0900
  • Cell Name: peg cell (CL4033014)
    Fold Change: 9.2021
    Cell Significance Index: 212.6000
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 9.0320
    Cell Significance Index: 313.8600
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 9.0016
    Cell Significance Index: 1162.9400
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: 8.8983
    Cell Significance Index: 164.4700
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 8.8751
    Cell Significance Index: 185.7700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 8.7938
    Cell Significance Index: 1207.6300
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 8.6171
    Cell Significance Index: 1059.5500
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 8.5440
    Cell Significance Index: 1540.2200
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 8.3871
    Cell Significance Index: 593.1700
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 8.2800
    Cell Significance Index: 976.4700
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 7.8734
    Cell Significance Index: 586.8000
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 7.7993
    Cell Significance Index: 3448.2400
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 7.4854
    Cell Significance Index: 4087.9600
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 7.2217
    Cell Significance Index: 78.5100
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 6.7853
    Cell Significance Index: 437.7500
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 6.0408
    Cell Significance Index: 177.4100
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 5.8436
    Cell Significance Index: 749.1200
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 5.0990
    Cell Significance Index: 237.7400
  • Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
    Fold Change: 4.9755
    Cell Significance Index: 30.6200
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 4.7281
    Cell Significance Index: 43.5400
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 4.5969
    Cell Significance Index: 125.1300
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 4.5572
    Cell Significance Index: 239.2700
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 4.1187
    Cell Significance Index: 703.2900
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 2.9441
    Cell Significance Index: 2228.4600
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 2.3952
    Cell Significance Index: 2162.7300
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 2.1082
    Cell Significance Index: 208.5500
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 2.0945
    Cell Significance Index: 109.1000
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 1.8377
    Cell Significance Index: 49.0700
  • Cell Name: oral mucosa squamous cell (CL1001576)
    Fold Change: 1.8352
    Cell Significance Index: 15.7700
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.9282
    Cell Significance Index: 184.2100
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.9123
    Cell Significance Index: 173.6300
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: 0.8685
    Cell Significance Index: 636.7500
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.5555
    Cell Significance Index: 25.1800
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 0.2430
    Cell Significance Index: 1.9400
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.1874
    Cell Significance Index: 9.7400
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0722
    Cell Significance Index: -136.0300
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.1007
    Cell Significance Index: -74.5700
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.1480
    Cell Significance Index: -272.9800
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.1821
    Cell Significance Index: -280.3500
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.2257
    Cell Significance Index: -127.3000
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.2265
    Cell Significance Index: -308.0400
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.2428
    Cell Significance Index: -151.6000
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.3584
    Cell Significance Index: -227.6400
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: -0.4303
    Cell Significance Index: -154.3400
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.4508
    Cell Significance Index: -90.4300
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.4619
    Cell Significance Index: -36.5800
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.5307
    Cell Significance Index: -111.7700
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.5527
    Cell Significance Index: -250.8400
  • Cell Name: seromucus secreting cell (CL0000159)
    Fold Change: -0.7312
    Cell Significance Index: -15.2500
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.8600
    Cell Significance Index: -247.4600
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.8949
    Cell Significance Index: -102.1500
  • Cell Name: CD4-positive, alpha-beta thymocyte (CL0000810)
    Fold Change: -1.1236
    Cell Significance Index: -19.3700
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -1.1530
    Cell Significance Index: -70.8700
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -1.1599
    Cell Significance Index: -132.8900
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: -1.3183
    Cell Significance Index: -83.0900
  • Cell Name: endothelial cell of placenta (CL0009092)
    Fold Change: -1.4656
    Cell Significance Index: -8.8600
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: -1.5632
    Cell Significance Index: -254.2400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -1.5673
    Cell Significance Index: -87.9500
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -1.6095
    Cell Significance Index: -51.5500
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -1.6115
    Cell Significance Index: -26.9700
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -1.7370
    Cell Significance Index: -252.5000
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: -1.8015
    Cell Significance Index: -124.5800
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -2.6224
    Cell Significance Index: -273.0500
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -3.0631
    Cell Significance Index: -76.5700
  • Cell Name: perivascular cell (CL4033054)
    Fold Change: -3.0819
    Cell Significance Index: -14.2300
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -3.5184
    Cell Significance Index: -270.0000
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -3.6277
    Cell Significance Index: -222.4100
  • Cell Name: mature alpha-beta T cell (CL0000791)
    Fold Change: -3.8916
    Cell Significance Index: -21.2200
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: -4.0384
    Cell Significance Index: -87.4900
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -4.0889
    Cell Significance Index: -274.9400
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -4.2752
    Cell Significance Index: -58.3300
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -4.3957
    Cell Significance Index: -65.8700
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: -4.4696
    Cell Significance Index: -268.3300
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -5.2984
    Cell Significance Index: -156.0600
  • Cell Name: extravillous trophoblast (CL0008036)
    Fold Change: -5.3078
    Cell Significance Index: -32.9800
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -5.4536
    Cell Significance Index: -65.0100
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -5.4758
    Cell Significance Index: -93.8400
  • Cell Name: hepatic pit cell (CL2000054)
    Fold Change: -6.4430
    Cell Significance Index: -17.2600
  • Cell Name: luminal epithelial cell of mammary gland (CL0002326)
    Fold Change: -6.5072
    Cell Significance Index: -83.8000
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -6.7112
    Cell Significance Index: -246.3700
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -6.7144
    Cell Significance Index: -56.4000
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -6.7254
    Cell Significance Index: -297.4800
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: -6.8496
    Cell Significance Index: -197.3500

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** RPS13 is a small, acidic protein that belongs to the ribosomal protein family. It is a component of the 40S ribosomal subunit, which is responsible for the initiation and elongation phases of translation. RPS13 is highly conserved across species, with high sequence similarity between human and other eukaryotic organisms. It is also highly expressed in various cell types, including epithelial cells, immune cells, and cancer cells. RPS13 has been shown to interact with other proteins involved in translation initiation, including eIF2, eIF4E, and eIF3. **Pathways and Functions** RPS13 plays a critical role in the regulation of translation initiation and elongation. Its primary function is to bind to the mRNA cap-binding complex and eIFs, facilitating the recruitment of the 40S ribosomal subunit to the mRNA. This interaction is essential for the initiation of translation, as it allows the ribosome to scan the mRNA and recognize the start codon. RPS13 also interacts with other proteins involved in translation elongation, including eEF1A and eEF2, which are essential for the movement of the ribosome along the mRNA. In addition to its role in translation, RPS13 has been implicated in various cellular processes, including stress response, apoptosis, and immune response. Its expression is significantly upregulated in response to stress, starvation, and viral infections, highlighting its importance in regulating cellular responses to environmental challenges. **Clinical Significance** RPS13 has been implicated in various diseases, including cancer, viral infections, and neurological disorders. Its expression is significantly altered in various types of cancer, including breast, lung, and colon cancer. RPS13 has also been shown to play a role in the regulation of immune responses, including the activation of immune cells and the production of cytokines. Furthermore, RPS13 has been implicated in the pathogenesis of viral infections, including influenza and SARS-CoV-2. Its expression is significantly upregulated in response to viral infections, highlighting its importance in regulating cellular responses to viral challenges. In conclusion, RPS13 is a critical component of the 40S ribosomal subunit, playing a pivotal role in the regulation of translation initiation and elongation. Its expression is significantly altered in various diseases, including cancer, viral infections, and neurological disorders. Further research is needed to fully elucidate the role of RPS13 in regulating cellular responses to environmental challenges and to explore its potential as a therapeutic target. **Implications for Immunology and Disease** The study of RPS13 has significant implications for our understanding of immunology and disease. Its role in regulating translation initiation and elongation highlights its importance in regulating cellular responses to environmental challenges. Its expression is significantly altered in various diseases, including cancer, viral infections, and neurological disorders. Furthermore, RPS13 has been implicated in the regulation of immune responses, including the activation of immune cells and the production of cytokines. Its expression is significantly upregulated in response to viral infections, highlighting its importance in regulating cellular responses to viral challenges. The study of RPS13 has significant implications for the development of novel therapeutic strategies for various diseases, including cancer and viral infections. Further research is needed to fully elucidate the role of RPS13 in regulating cellular responses to environmental challenges and to explore its potential as a therapeutic target. **Potential Therapeutic Applications** The study of RPS13 has significant implications for the development of novel therapeutic strategies for various diseases, including cancer and viral infections. Its role in regulating translation initiation and elongation highlights its importance in regulating cellular responses to environmental challenges. RPS13 has been implicated in the regulation of immune responses, including the activation of immune cells and the production of cytokines. Its expression is significantly upregulated in response to viral infections, highlighting its importance in regulating cellular responses to viral challenges. The development of novel therapeutic strategies targeting RPS13 has significant implications for the treatment of various diseases, including cancer and viral infections. Further research is needed to fully elucidate the role of RPS13 in regulating cellular responses to environmental challenges and to explore its potential as a therapeutic target. In conclusion, the study of RPS13 has significant implications for our understanding of immunology and disease. Its role in regulating translation initiation and elongation highlights its importance in regulating cellular responses to environmental challenges. Its expression is significantly altered in various diseases, including cancer, viral infections, and neurological disorders. Further research is needed to fully elucidate the role of RPS13 in regulating cellular responses to environmental challenges and to explore its potential as a therapeutic target.

Genular Protein ID: 2267300521

Symbol: RS13_HUMAN

Name: 40S ribosomal protein S13

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8332508

Title: Cloning and analysis of the human S13 ribosomal protein cDNA.

PubMed ID: 8332508

DOI: 10.1093/nar/21.12.2945

PubMed ID: 8920921

Title: U14 snoRNAs are encoded in introns of human ribosomal protein S13 gene.

PubMed ID: 8920921

DOI: 10.1006/bbrc.1996.1668

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8706699

Title: Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry.

PubMed ID: 8706699

DOI: 10.1111/j.1432-1033.1996.0144u.x

PubMed ID: 15592455

Title: Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.

PubMed ID: 15592455

DOI: 10.1038/nbt1046

PubMed ID: 18691976

Title: Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.

PubMed ID: 18691976

DOI: 10.1016/j.molcel.2008.07.007

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24524803

Title: A new system for naming ribosomal proteins.

PubMed ID: 24524803

DOI: 10.1016/j.sbi.2014.01.002

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

DOI: 10.1038/nsmb.3366

PubMed ID: 36638793

Title: An E3 ligase network engages GCN1 to promote the degradation of translation factors on stalled ribosomes.

PubMed ID: 36638793

DOI: 10.1016/j.cell.2022.12.025

PubMed ID: 23636399

Title: Structures of the human and Drosophila 80S ribosome.

PubMed ID: 23636399

DOI: 10.1038/nature12104

PubMed ID: 34516797

Title: Nucleolar maturation of the human small subunit processome.

PubMed ID: 34516797

DOI: 10.1126/science.abj5338

Sequence Information:

  • Length: 151
  • Mass: 17222
  • Checksum: 23F94D38F87B8D53
  • Sequence:
  • MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI GVILRDSHGV 
    AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK HLERNRKDKD AKFRLILIES 
    RIHRLARYYK TKRVLPPNWK YESSTASALV A

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.