Details for: COL21A1
Gene ID: 81578
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: COL21A1
Ensembl ID: ENSG00000124749
Description: collagen type XXI alpha 1 chain
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
-
CSI 27.6rCSI 44.39%PRS 77.74
-
CSI 25.63rCSI 30.62%PRS 76.75
-
CSI 13.1rCSI 21.99%PRS 76.71
-
CSI 12.91rCSI 26.19%PRS 72.1
-
CSI 12.71rCSI 39.74%PRS 79.75
-
CSI 10.78rCSI 38.81%PRS 74.63
-
CSI 8.26rCSI 8.24%PRS 84.25
-
CSI 6.86rCSI 19.31%PRS 86
-
CSI 6.78rCSI 8.74%PRS 77.81
-
CSI 5.83rCSI 8.07%PRS 86.67
-
CSI 5.8rCSI 5.4%PRS 91.12
-
CSI 5.15rCSI 17.26%PRS 76.44
-
CSI 5.09rCSI 5.45%PRS 91.3
-
CSI 4.48rCSI 12.72%PRS 86.54
-
CSI 4.23rCSI 6.93%PRS 82.65
-
CSI 3.9rCSI 4.27%PRS 91.39
-
CSI 3.75rCSI 4.63%PRS 88.5
-
CSI 3.67rCSI 40.24%PRS 91.9
-
CSI 3.67rCSI 13.74%PRS 85.09
-
CSI 3.55rCSI 3.12%PRS 81.18
-
CSI 3.5rCSI 11.21%PRS 88.54
-
CSI 3.35rCSI 7.73%PRS 80.7
-
CSI 3.28rCSI 4.71%PRS 82.08
-
CSI 3.25rCSI 4.78%PRS 84.61
-
CSI 3.23rCSI 6.7%PRS 88.16
-
CSI 3.12rCSI 5.06%PRS 84.1
-
CSI 3.11rCSI 5.45%PRS 86.22
-
CSI 3.11rCSI 3.6%PRS 84.27
-
CSI 3.04rCSI 3.9%PRS 81.79
-
CSI 2.96rCSI 9.6%PRS 88.08
-
CSI 2.93rCSI 7%PRS 84.19
-
CSI 2.75rCSI 6.16%PRS 77.12
-
CSI 2.65rCSI 7.31%PRS 87.07
-
CSI 2.62rCSI 4.04%PRS 88.23
-
CSI 2.5rCSI 3%PRS 88.8
-
CSI 2.46rCSI 3.89%PRS 90.82
-
CSI 2.41rCSI 7.11%PRS 89.06
-
CSI 2.3rCSI 2.12%PRS 91.03
-
CSI 2.21rCSI 1.79%PRS 89.2
-
CSI 2.11rCSI 6.58%PRS 78.12
-
CSI 1.99rCSI 2.91%PRS 93.2
-
CSI 1.96rCSI 5.72%PRS 95.67
-
CSI 1.92rCSI 2.39%PRS 74.53
-
CSI 1.85rCSI 2.94%PRS 85.15
-
CSI 1.83rCSI 4.39%PRS 79.33
-
CSI 1.83rCSI 4.17%PRS 83.09
-
CSI 1.69rCSI 6.62%PRS 72.84
-
CSI 1.66rCSI 8.73%PRS 90.23
-
CSI 1.64rCSI 2.9%PRS 92.62
-
CSI 1.59rCSI 3.87%PRS 74.49
-
CSI 1.3rCSI 4.2%PRS 86.45
-
CSI 1.3rCSI 3.31%PRS 84.79
-
CSI 1.2rCSI 4.88%PRS 94.89
-
CSI 1.09rCSI 1.93%PRS 76.15
-
CSI 1.01rCSI 2.93%PRS 88.99
-
CSI 1rCSI 3.77%PRS 76.92
-
CSI 0.85rCSI 5.29%PRS 83.64
-
CSI 0.62rCSI 3.66%PRS 77.18
-
CSI 0.45rCSI 3.34%PRS 81.26
-
CSI 0.45rCSI 3.69%PRS 86.91
-
CSI 0.41rCSI 6.7%PRS 91.06
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
-
Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 1557718669
Symbol: COLA1_HUMAN
Name: Collagen alpha-1(XXI) chain
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11566190
Title: A new FACIT of the collagen family: COL21A1.
PubMed ID: 11566190
PubMed ID: 11863369
Title: Genomic organization and characterization of the human type XXI collagen (COL21A1) gene.
PubMed ID: 11863369
PubMed ID: 11230166
Title: Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
PubMed ID: 11230166
DOI: 10.1101/gr.gr1547r
PubMed ID: 15498874
Title: Large-scale cDNA transfection screening for genes related to cancer development and progression.
PubMed ID: 15498874
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 14574404
Title: The DNA sequence and analysis of human chromosome 6.
PubMed ID: 14574404
DOI: 10.1038/nature02055
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
Sequence Information:
- Length: 957
- Mass: 99369
- Checksum: 4C5CDF5E6656A675
- Sequence:
MAHYITFLCM VLVLLLQNSV LAEDGEVRSS CRTAPTDLVF ILDGSYSVGP ENFEIVKKWL VNITKNFDIG PKFIQVGVVQ YSDYPVLEIP LGSYDSGEHL TAAVESILYL GGNTKTGKAI QFALDYLFAK SSRFLTKIAV VLTDGKSQDD VKDAAQAARD SKITLFAIGV GSETEDAELR AIANKPSSTY VFYVEDYIAI SKIREVMKQK LCEESVCPTR IPVAARDERG FDILLGLDVN KKVKKRIQLS PKKIKGYEVT SKVDLSELTS NVFPEGLPPS YVFVSTQRFK VKKIWDLWRI LTIDGRPQIA VTLNGVDKIL LFTTTSVING SQVVTFANPQ VKTLFDEGWH QIRLLVTEQD VTLYIDDQQI ENKPLHPVLG ILINGQTQIG KYSGKEETVQ FDVQKLRIYC DPEQNNRETA CEIPGFNGEC LNGPSDVGST PAPCICPPGK PGLQGPKGDP GLPGNPGYPG QPGQDGKPGY QGIAGTPGVP GSPGIQGARG LPGYKGEPGR DGDKGDRGLP GFPGLHGMPG SKGEMGAKGD KGSPGFYGKK GAKGEKGNAG FPGLPGPAGE PGRHGKDGLM GSPGFKGEAG SPGAPGQDGT RGEPGIPGFP GNRGLMGQKG EIGPPGQQGK KGAPGMPGLM GSNGSPGQPG TPGSKGSKGE PGIQGMPGAS GLKGEPGATG SPGEPGYMGL PGIQGKKGDK GNQGEKGIQG QKGENGRQGI PGQQGIQGHH GAKGERGEKG EPGVRGAIGS KGESGVDGLM GPAGPKGQPG DPGPQGPPGL DGKPGREFSE QFIRQVCTDV IRAQLPVLLQ SGRIRNCDHC LSQHGSPGIP GPPGPIGPEG PRGLPGLPGR DGVPGLVGVP GRPGVRGLKG LPGRNGEKGS QGFGYPGEQG PPGPPGPEGP PGISKEGPPG DPGLPGKDGD HGKPGIQGQP GPPGICDPSL CFSVIARRDP FRKGPNY
Genular Protein ID: 4176990251
Symbol: B3KU30_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
Sequence Information:
- Length: 314
- Mass: 33170
- Checksum: A0846A878C744813
- Sequence:
MAHQASLEHR DLREAKVNLE FKGCLGLLGS RENQEQRVPQ ENQDTWVYPG FKEKRGTKEI KVKKVFRVKR EKMEDREFQG NREFKAIMVQ KERGEKGEPG VRGAIGSKGE SGVDGLMGPA GPKGQPGDPG PQGPPGLDGK PGREFSEQFI RQVCTDVIRA QLPVLLQSGR IRNCDHCLSQ HGSPGIPGPP GPIGPEGPRG LPGLPGRDGV PGLVGVPGRP GVRGLKGLPG RNGEKGSQGF GYPGEQGPPG PPGPEGPPGI SKEGPPGDPG LPGKDGDHGK PGIQGQPGPP GICDPSLCFS VIARRDPFRK GPNY
Genular Protein ID: 3837728552
Symbol: B7ZLK3_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
Sequence Information:
- Length: 957
- Mass: 99341
- Checksum: D8448FAD5ABDD52E
- Sequence:
MAHYITFLCM VLVLLLQNSV LAEDGEVRSS CRTAPTDLVF ILDGSYSVGP ENFEIVKKWL VNITKNFDIG PKFIQVGVVQ YSDYPVLEIP LGSYDSGEHL TAAVESILYL GGNTKTGKAI QFALDYLFAK SSRFLTKIAV VLTDGKSQDD VKDAAQAARD SKITLFAIGV GSETEDAELK AIANKPSSTY VFYVEDYIAI SKIREVMKQK LCEESVCPTR IPVAARDERG FDILLGLDVN KKVKKRIQLS PKKIKGYEVT SKVDLSELTS NVFPEGLPPS YVFVSTQRFK VKKIWDLWRI LTIDGRPQIA VTLNGVDKIL LFTTTSVING SQVVTFANPQ VKTLFDEGWH QIRLLVTEQD VTLYIDDQQI ENKPLHPVLG ILINGQTQIG KYSGKEETVQ FDVQKLRIYC DPEQNNRETA CEIPGFNGEC LNGPSDVGST PAPCICPPGK PGLQGPKGDP GLPGNPGYPG QPGQDGKPGY QGIAGTPGVP GSPGIQGARG LPGYKGEPGR DGDKGDRGLP GFPGLHGMPG SKGEMGAKGD KGSPGFYGKK GAKGEKGNAG FPGLPGPAGE PGRHGKDGLM GSPGFKGEAG SPGAPGQDGT RGEPGIPGFP GNRGLMGQKG EIGPPGQQGK KGAPGMPGLM GSNGSPGQPG TPGSKGSKGE PGIQGMPGAS GLKGEPGATG SPGEPGYMGL PGIQGKKGDK GNQGEKGIQG QKGENGRQGI PGQQGIQGHH GAKGERGEKG EPGVRGAIGS KGESGVDGLM GPAGPKGQPG DPGPQGPPGL DGKPGREFSE QFIRQVCTDV IRAQLPVLLQ SGRIRNCDHC LSQHGSPGIP GPPGPIGPEG PRGLPGLPGR DGVPGLVGVP GRPGVRGLKG LPGRNGEKGS QGFGYPGEQG PPGPPGPEGP PGISKEGPPG DPGLPGKDGD HGKPGIQGQP GPPGICDPSL CFSVIARRDP FRKGPNY