Details for: NPHP3
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 190.0412
Cell Significance Index: -29.5600 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 112.6779
Cell Significance Index: -28.5800 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 67.6943
Cell Significance Index: -31.9600 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 61.4389
Cell Significance Index: -24.9600 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 57.0195
Cell Significance Index: -29.3300 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 26.2112
Cell Significance Index: -25.0300 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 24.4129
Cell Significance Index: -30.1000 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 11.4489
Cell Significance Index: -30.6700 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 8.5204
Cell Significance Index: -26.1700 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 7.6545
Cell Significance Index: -30.2100 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 1.3734
Cell Significance Index: 395.1800 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.2795
Cell Significance Index: 256.6700 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 1.1615
Cell Significance Index: 89.1300 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 1.1476
Cell Significance Index: 30.7500 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 1.0432
Cell Significance Index: 103.2000 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.7003
Cell Significance Index: 35.3900 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 0.6977
Cell Significance Index: 81.3100 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: 0.6770
Cell Significance Index: 14.4700 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.5749
Cell Significance Index: 32.2600 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: 0.5481
Cell Significance Index: 8.2600 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.5352
Cell Significance Index: 24.2600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.5236
Cell Significance Index: 56.9500 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.5199
Cell Significance Index: 84.5600 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.5001
Cell Significance Index: 179.3800 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.4798
Cell Significance Index: 59.0000 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.4727
Cell Significance Index: 28.3800 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.4143
Cell Significance Index: 56.9000 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 0.3959
Cell Significance Index: 11.3500 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.3905
Cell Significance Index: 8.4600 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.3435
Cell Significance Index: 61.9200 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.3414
Cell Significance Index: 9.8400 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.3204
Cell Significance Index: 221.5700 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: 0.3052
Cell Significance Index: 13.5000 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.3000
Cell Significance Index: 7.5000 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.2749
Cell Significance Index: 35.2400 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.2623
Cell Significance Index: 18.1400 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: 0.2218
Cell Significance Index: 3.8400 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 0.2100
Cell Significance Index: 10.9400 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.2029
Cell Significance Index: 110.8200 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.1971
Cell Significance Index: 37.5000 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 0.1965
Cell Significance Index: 12.0800 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: 0.1936
Cell Significance Index: 7.3300 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1889
Cell Significance Index: 83.5300 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.1821
Cell Significance Index: 164.3800 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.1308
Cell Significance Index: 3.5600 - Cell Name: decidual cell (CL2000002)
Fold Change: 0.1272
Cell Significance Index: 2.0400 - Cell Name: preadipocyte (CL0002334)
Fold Change: 0.1050
Cell Significance Index: 2.0500 - Cell Name: regular ventricular cardiac myocyte (CL0002131)
Fold Change: 0.0717
Cell Significance Index: 0.9200 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0666
Cell Significance Index: 4.2000 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.0145
Cell Significance Index: 2.4800 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0108
Cell Significance Index: 0.3800 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.0045
Cell Significance Index: 0.2900 - Cell Name: peg cell (CL4033014)
Fold Change: -0.0130
Cell Significance Index: -0.3000 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0156
Cell Significance Index: -11.4500 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0157
Cell Significance Index: -29.5700 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0195
Cell Significance Index: -35.9400 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.0202
Cell Significance Index: -0.5400 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0227
Cell Significance Index: -35.0100 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0269
Cell Significance Index: -36.5900 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0309
Cell Significance Index: -22.8700 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0337
Cell Significance Index: -25.5200 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0402
Cell Significance Index: -25.5100 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0472
Cell Significance Index: -2.2200 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0522
Cell Significance Index: -29.4400 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0569
Cell Significance Index: -2.6600 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0576
Cell Significance Index: -35.9700 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0581
Cell Significance Index: -6.6600 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: -0.0640
Cell Significance Index: -0.9200 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0666
Cell Significance Index: -30.2400 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0763
Cell Significance Index: -7.7900 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: -0.0813
Cell Significance Index: -5.7500 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.0814
Cell Significance Index: -0.9700 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.1314
Cell Significance Index: -16.9700 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.1475
Cell Significance Index: -7.6600 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.1494
Cell Significance Index: -2.5000 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1605
Cell Significance Index: -33.8100 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.1704
Cell Significance Index: -12.7000 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.1960
Cell Significance Index: -28.4900 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.2043
Cell Significance Index: -24.0900 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.2231
Cell Significance Index: -11.7200 - Cell Name: medium spiny neuron (CL1001474)
Fold Change: -0.2394
Cell Significance Index: -3.2300 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.2479
Cell Significance Index: -5.2800 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.2510
Cell Significance Index: -8.0400 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.2991
Cell Significance Index: -31.1400 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.3448
Cell Significance Index: -27.3100 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: -0.3608
Cell Significance Index: -4.4800 - Cell Name: endothelial cell of placenta (CL0009092)
Fold Change: -0.3625
Cell Significance Index: -2.1900 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.3714
Cell Significance Index: -3.4200 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.3767
Cell Significance Index: -7.8200 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.3828
Cell Significance Index: -23.4700 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.4572
Cell Significance Index: -9.5700 - Cell Name: OFF midget ganglion cell (CL4033047)
Fold Change: -0.4635
Cell Significance Index: -5.7800 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.4659
Cell Significance Index: -16.1900 - Cell Name: keratocyte (CL0002363)
Fold Change: -0.4961
Cell Significance Index: -7.8700 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.5460
Cell Significance Index: -7.4500 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -0.5667
Cell Significance Index: -13.5900 - Cell Name: ON midget ganglion cell (CL4033046)
Fold Change: -0.6156
Cell Significance Index: -7.7700 - Cell Name: fibroblast of cardiac tissue (CL0002548)
Fold Change: -0.6219
Cell Significance Index: -8.9300 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.6716
Cell Significance Index: -17.6600 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -0.6834
Cell Significance Index: -20.0700
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 517832130
Symbol: NPHP3_HUMAN
Name: Nephrocystin-3
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 12872122
Title: Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis.
PubMed ID: 12872122
DOI: 10.1038/ng1216
PubMed ID: 12056414
Title: Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method.
PubMed ID: 12056414
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 17974005
Title: The full-ORF clone resource of the German cDNA consortium.
PubMed ID: 17974005
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 20462968
Title: Nephrocystin-3 is required for ciliary function in zebrafish embryos.
PubMed ID: 20462968
PubMed ID: 22085962
Title: An ARL3-UNC119-RP2 GTPase cycle targets myristoylated NPHP3 to the primary cilium.
PubMed ID: 22085962
PubMed ID: 22863007
Title: Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling.
PubMed ID: 22863007
PubMed ID: 23418306
Title: Mutations in NEK8 link multiple organ dysplasia with altered Hippo signalling and increased c-MYC expression.
PubMed ID: 23418306
DOI: 10.1093/hmg/ddt070
PubMed ID: 23793029
Title: ANKS6 is a central component of a nephronophthisis module linking NEK8 to INVS and NPHP3.
PubMed ID: 23793029
DOI: 10.1038/ng.2681
PubMed ID: 18371931
Title: Loss of nephrocystin-3 function can cause embryonic lethality, Meckel-Gruber-like syndrome, situs inversus, and renal-hepatic-pancreatic dysplasia.
PubMed ID: 18371931
Sequence Information:
- Length: 1330
- Mass: 150864
- Checksum: 99C1F17C9A5117F8
- Sequence:
MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRNSFRRGAG AAAGAGPGSL PRGVGAGGLL GASFKSTGSS VPELEYAAAE YERLRKEYEI FRVSKNQELL SMGRREAKLD TENKRLRAEL QALQKTYQKI LREKESALEA KYQAMERAAT FEHDRDKVKR QFKIFRETKE NEIQDLLRAK RELESKLQRL QAQGIQVFDP GESDSDDNCT DVTAAGTQCE YWTGGALGSE PSIGSMIQLQ QSFRGPEFAH SSIDVEGPFA NVNRDDWDIA VASLLQVTPL FSHSLWSNTV RCYLIYTDET QPEMDLFLKD YSPKLKRMCE TMGYFFHAVY FPIDVENQYL TVRKWEIEKS SLVILFIHLT LPSLLLEDCE EAFLKNPEGK PRLIFHRLED GKVSSDSVQQ LIDQVSNLNK TSKAKIIDHS GDPAEGVYKT YICVEKIIKQ DILGFENTDL ETKDLGSEDS IPEEDDFGDV LWDIHDEQEQ METFQQASNS AHELGFEKYY QRLNDLVAAP APIPPLLVSG GPGSGKSLLL SKWIQLQQKN SPNTLILSHF VGRPMSTSSE SSLIIKRLTL KLMQHSWSVS ALTLDPAKLL EEFPRWLEKL SARHQGSIII VIDSIDQVQQ VEKHMKWLID PLPVNVRVIV SVNVETCPPA WRLWPTLHLD PLSPKDAKSI IIAECHSVDI KLSKEQEKKL ERHCRSATTC NALYVTLFGK MIARAGRAGN LDKILHQCFQ CQDTLSLYRL VLHSIRESMA NDVDKELMKQ ILCLVNVSHN GVSESELMEL YPEMSWTFLT SLIHSLYKMC LLTYGCGLLR FQHLQAWETV RLEYLEGPTV TSSYRQKLIN YFTLQLSQDR VTWRSADELP WLFQQQGSKQ KLHDCLLNLF VSQNLYKRGH FAELLSYWQF VGKDKSAMAT EYFDSLKQYE KNCEGEDNMS CLADLYETLG RFLKDLGLLS QAIVPLQRSL EIRETALDPD HPRVAQSLHQ LASVYVQWKK FGNAEQLYKQ ALEISENAYG ADHPYTAREL EALATLYQKQ NKYEQAEHFR KKSFKIHQKA IKKKGNLYGF ALLRRRALQL EELTLGKDTP DNARTLNELG VLYYLQNNLE TADQFLKRSL EMRERVLGPD HPDCAQSLNN LAALCNEKKQ YDKAEELYER ALDIRRRALA PDHPSLAYTV KHLAILYKKM GKLDKAVPLY ELAVEIRQKS FGPKHPSVAT ALVNLAVLYS QMKKHVEALP LYERALKIYE DSLGRMHPRV GETLKNLAVL SYEGGDFEKA AELYKRAMEI KEAETSLLGG KAPSRHSSSG DTFSLKTAHS PNVFLQQGQR
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.