Details for: H1 0

Gene ID: 3005

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: H1 0

Ensembl ID: ENSG00000189060

Description: H1.0 linker histone

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • tracheobronchial smooth muscle cell CL0019019
    CSI 27.41
    rCSI 48.33%
    PRS 70.58
  • peripheral nervous system neuron CL2000032
    CSI 27.11
    rCSI 36.94%
    PRS 54.27
  • mesodermal cell CL0000222
    CSI 25.57
    rCSI 30.7%
    PRS 60.56
  • enteric smooth muscle cell CL0002504
    CSI 25.02
    rCSI 35.7%
    PRS 64.75
  • pancreatic acinar cell CL0002064
    CSI 22.88
    rCSI 30.4%
    PRS 68.98
  • blood vessel endothelial cell CL0000071
    CSI 22.62
    rCSI 46.93%
    PRS 59.55
  • intestine goblet cell CL0019031
    CSI 22.4
    rCSI 19.88%
    PRS 60.31
  • late pro-B cell CL0002048
    CSI 21.01
    rCSI 52.65%
    PRS 85.24
  • colon epithelial cell CL0011108
    CSI 20.97
    rCSI 21.96%
    PRS 58.89
  • squamous epithelial cell CL0000076
    CSI 20.74
    rCSI 49.22%
    PRS 66.09
  • mononuclear phagocyte CL0000113
    CSI 20.15
    rCSI 44.36%
    PRS 66.78
  • hematopoietic stem cell CL0000037
    CSI 18.89
    rCSI 12.55%
    PRS 65.6
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 18.15
    rCSI 20.96%
    PRS 55.52
  • colon goblet cell CL0009039
    CSI 18.13
    rCSI 43.09%
    PRS 71.24
  • ionocyte CL0005006
    CSI 17.74
    rCSI 19.01%
    PRS 62.05
  • pulmonary artery endothelial cell CL1001568
    CSI 16.56
    rCSI 22.54%
    PRS 74.09
  • microcirculation associated smooth muscle cell CL0008035
    CSI 15.82
    rCSI 45.79%
    PRS 63.75
  • nasal mucosa goblet cell CL0002480
    CSI 14.68
    rCSI 17.02%
    PRS 70.04
  • fallopian tube secretory epithelial cell CL4030006
    CSI 14.31
    rCSI 13.78%
    PRS 62.52
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 14.26
    rCSI 18.3%
    PRS 59.64
  • sncg GABAergic cortical interneuron CL4023015
    CSI 14.23
    rCSI 22.88%
    PRS 46.14
  • radial glial cell CL0000681
    CSI 13.53
    rCSI 18.8%
    PRS 60.99
  • forebrain radial glial cell CL0013000
    CSI 13.02
    rCSI 41.77%
    PRS 67.47
  • pancreatic ductal cell CL0002079
    CSI 12.9
    rCSI 25.09%
    PRS 65.47
  • epithelial cell of lung CL0000082
    CSI 12.8
    rCSI 10.61%
    PRS 61.84
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 12.18
    rCSI 12.42%
    PRS 75.2
  • lung neuroendocrine cell CL1000223
    CSI 12.11
    rCSI 17.92%
    PRS 67.75
  • myofibroblast cell CL0000186
    CSI 12.01
    rCSI 16.63%
    PRS 63.39
  • vascular associated smooth muscle cell CL0000359
    CSI 11.99
    rCSI 38.89%
    PRS 62.7
  • neural progenitor cell CL0011020
    CSI 11.89
    rCSI 52.33%
    PRS 52.7
  • duct epithelial cell CL0000068
    CSI 11.77
    rCSI 17.22%
    PRS 67.27
  • multi-ciliated epithelial cell CL0005012
    CSI 11.61
    rCSI 11.58%
    PRS 55.8
  • tracheal goblet cell CL1000329
    CSI 11.48
    rCSI 25.07%
    PRS 75.85
  • pro-B cell CL0000826
    CSI 11.46
    rCSI 9.49%
    PRS 64.68
  • alveolar adventitial fibroblast CL4028006
    CSI 11.01
    rCSI 17.39%
    PRS 64.72
  • ciliated cell CL0000064
    CSI 10.86
    rCSI 17.59%
    PRS 59.05
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 10.67
    rCSI 9.63%
    PRS 59.37
  • bronchus fibroblast of lung CL2000093
    CSI 10.54
    rCSI 8.57%
    PRS 62.89
  • fibroblast of lung CL0002553
    CSI 10.46
    rCSI 9.73%
    PRS 62.99
  • respiratory epithelial cell CL0002368
    CSI 8.92
    rCSI 55.07%
    PRS 88.48
  • lung pericyte CL0009089
    CSI 8.72
    rCSI 23.03%
    PRS 71.24
  • Hofbauer cell CL3000001
    CSI 8.59
    rCSI 16.22%
    PRS 72.83
  • primitive red blood cell CL0002355
    CSI 8.37
    rCSI 45.17%
    PRS 74.66
  • promyelocyte CL0000836
    CSI 8.21
    rCSI 11.84%
    PRS 72
  • alveolar type 1 fibroblast cell CL4028004
    CSI 8.18
    rCSI 8.96%
    PRS 66.19
  • epithelial cell of lower respiratory tract CL0002632
    CSI 8.17
    rCSI 6.34%
    PRS 64.45
  • club cell CL0000158
    CSI 8.07
    rCSI 11.83%
    PRS 58.47
  • foveolar cell of stomach CL0002179
    CSI 7.8
    rCSI 16.61%
    PRS 73.49
  • secretory cell CL0000151
    CSI 7.73
    rCSI 8.06%
    PRS 62.73
  • pancreatic A cell CL0000171
    CSI 7.64
    rCSI 8%
    PRS 66.12
  • basal cell of epidermis CL0002187
    CSI 7.61
    rCSI 13.49%
    PRS 36.71
  • interstitial cell of Cajal CL0002088
    CSI 7.57
    rCSI 9.63%
    PRS 68.93
  • lung macrophage CL1001603
    CSI 7.54
    rCSI 16.83%
    PRS 70.28
  • type EC enteroendocrine cell CL0000577
    CSI 7.47
    rCSI 26.5%
    PRS 71.05
  • goblet cell CL0000160
    CSI 7.46
    rCSI 7.05%
    PRS 61.91
  • myeloid leukocyte CL0000766
    CSI 7.32
    rCSI 6.75%
    PRS 63.85
  • lung secretory cell CL1000272
    CSI 7.15
    rCSI 17.71%
    PRS 60.89
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 7.14
    rCSI 9.36%
    PRS 76.04
  • mesenchymal cell CL0008019
    CSI 7.09
    rCSI 18.01%
    PRS 56.63
  • inhibitory interneuron CL0000498
    CSI 6.96
    rCSI 16.07%
    PRS 51.48
  • platelet CL0000233
    CSI 6.92
    rCSI 28.72%
    PRS 65.62
  • adventitial cell CL0002503
    CSI 6.89
    rCSI 16.46%
    PRS 70.9
  • common lymphoid progenitor CL0000051
    CSI 6.82
    rCSI 9.11%
    PRS 82.69
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 6.74
    rCSI 5.19%
    PRS 62.98
  • mesenchymal stem cell CL0000134
    CSI 6.72
    rCSI 73.57%
    PRS 74.65
  • chondrocyte CL0000138
    CSI 6.61
    rCSI 10.52%
    PRS 54.79
  • intestinal epithelial cell CL0002563
    CSI 6.55
    rCSI 6.85%
    PRS 60.46
  • glioblast CL0000030
    CSI 6.51
    rCSI 10.39%
    PRS 54.93
  • early lymphoid progenitor CL0000936
    CSI 6.36
    rCSI 5.59%
    PRS 68.04
  • common dendritic progenitor CL0001029
    CSI 6.36
    rCSI 7.98%
    PRS 72.87
  • basal cell CL0000646
    CSI 6.19
    rCSI 8.27%
    PRS 62.75
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 6.15
    rCSI 18.14%
    PRS 65.57
  • retinal blood vessel endothelial cell CL0002585
    CSI 6.05
    rCSI 9.66%
    PRS 66.57
  • conjunctival epithelial cell CL1000432
    CSI 5.98
    rCSI 9.13%
    PRS 63.11
  • enterocyte CL0000584
    CSI 5.94
    rCSI 9.58%
    PRS 66.02
  • intestinal tuft cell CL0019032
    CSI 5.92
    rCSI 9.04%
    PRS 66.67
  • melanocyte CL0000148
    CSI 5.88
    rCSI 4.35%
    PRS 54.96
  • ciliated epithelial cell CL0000067
    CSI 5.8
    rCSI 5.1%
    PRS 50.35
  • cerebral cortex endothelial cell CL1001602
    CSI 5.78
    rCSI 9.99%
    PRS 52.54
  • kidney collecting duct principal cell CL1001431
    CSI 5.69
    rCSI 28.62%
    PRS 63.16
  • erythroid lineage cell CL0000764
    CSI 5.6
    rCSI 36%
    PRS 79.72
  • granulocyte CL0000094
    CSI 5.54
    rCSI 8.47%
    PRS 71.84
  • enteroendocrine cell CL0000164
    CSI 5.53
    rCSI 7.56%
    PRS 64.15
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 5.52
    rCSI 6.87%
    PRS 42.21
  • respiratory basal cell CL0002633
    CSI 5.47
    rCSI 5.67%
    PRS 68.2
  • renal principal cell CL0005009
    CSI 5.4
    rCSI 14.02%
    PRS 65.92
  • granulocyte monocyte progenitor cell CL0000557
    CSI 5.4
    rCSI 4.67%
    PRS 67.49
  • small intestine goblet cell CL1000495
    CSI 5.38
    rCSI 11.78%
    PRS 70.41
  • erythrocyte CL0000232
    CSI 5.37
    rCSI 12.18%
    PRS 66.39
  • pancreatic D cell CL0000173
    CSI 5.36
    rCSI 5.27%
    PRS 65.13
  • respiratory suprabasal cell CL4033048
    CSI 5.31
    rCSI 6.81%
    PRS 67.34
  • luminal epithelial cell of mammary gland CL0002326
    CSI 5.28
    rCSI 9.6%
    PRS 77.45
  • keratinocyte CL0000312
    CSI 5.09
    rCSI 4.27%
    PRS 66.85
  • vascular leptomeningeal cell CL4023051
    CSI 5.08
    rCSI 8.91%
    PRS 54.25
  • brush cell CL0002204
    CSI 4.97
    rCSI 9.84%
    PRS 78.71
  • transit amplifying cell CL0009010
    CSI 4.87
    rCSI 7.45%
    PRS 75.66
  • glial cell CL0000125
    CSI 4.72
    rCSI 17.97%
    PRS 53.17
  • alternatively activated macrophage CL0000890
    CSI 4.7
    rCSI 5.91%
    PRS 74.39
  • progenitor cell CL0011026
    CSI 4.61
    rCSI 9.81%
    PRS 61.62
  • intestinal crypt stem cell of colon CL0009043
    CSI 4.58
    rCSI 34.43%
    PRS 78.24
  • epithelial cell of urethra CL1000296
    CSI 0.2
    rCSI 4.4%
    PRS 78.9%
  • Cajal-Retzius cell CL0000695
    CSI 0.2
    rCSI 1.6%
    PRS 73.8%
  • kidney loop of Henle epithelial cell CL1000909
    CSI 0.2
    rCSI 4.6%
    PRS 89.6%
  • acinar cell of salivary gland CL0002623
    CSI 0.2
    rCSI 5.4%
    PRS 80.9%
  • paneth cell of colon CL0009009
    CSI 0.3
    rCSI 3.0%
    PRS 79.2%
  • Merkel cell CL0000242
    CSI 0.3
    rCSI 7.4%
    PRS 94.1%
  • peptic cell CL0000155
    CSI 0.4
    rCSI 3.4%
    PRS 80.4%
  • osteoblast CL0000062
    CSI 0.4
    rCSI 10.6%
    PRS 88.8%
  • erythroid progenitor cell CL0000038
    CSI 0.5
    rCSI 2.8%
    PRS 71.7%
  • epithelial cell of nephron CL1000449
    CSI 0.5
    rCSI 4.9%
    PRS 91.9%
  • tracheobronchial serous cell CL0019001
    CSI 0.5
    rCSI 2.3%
    PRS 75.0%
  • bronchial goblet cell CL1000312
    CSI 0.5
    rCSI 2.1%
    PRS 77.9%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.6
    rCSI 1.7%
    PRS 73.6%
  • P/D1 enteroendocrine cell CL0002268
    CSI 0.6
    rCSI 3.3%
    PRS 77.8%
  • pancreatic epsilon cell CL0005019
    CSI 0.6
    rCSI 2.9%
    PRS 78.8%
  • enteroglial cell CL4040002
    CSI 0.7
    rCSI 3.7%
    PRS 67.5%
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 0.7
    rCSI 3.7%
    PRS 83.8%
  • vasa recta ascending limb cell CL1001131
    CSI 0.8
    rCSI 3.5%
    PRS 78.8%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 0.8
    rCSI 2.5%
    PRS 48.3%
  • transit amplifying cell of small intestine CL0009012
    CSI 0.8
    rCSI 3.7%
    PRS 76.8%
  • type B pancreatic cell CL0000169
    CSI 0.9
    rCSI 2.0%
    PRS 60.4%
  • pancreatic PP cell CL0002275
    CSI 0.9
    rCSI 3.7%
    PRS 74.8%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 1.0
    rCSI 2.2%
    PRS 58.8%
  • respiratory goblet cell CL0002370
    CSI 1.0
    rCSI 10.6%
    PRS 77.0%
  • stromal cell of ovary CL0002132
    CSI 1.0
    rCSI 2.7%
    PRS 74.9%
  • neuroendocrine cell CL0000165
    CSI 1.0
    rCSI 3.9%
    PRS 76.7%
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 1.1
    rCSI 2.8%
    PRS 57.4%
  • mammary gland epithelial cell CL0002327
    CSI 1.1
    rCSI 3.8%
    PRS 75.0%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 1.1
    rCSI 4.3%
    PRS 82.2%
  • lung goblet cell CL1000143
    CSI 1.1
    rCSI 12.6%
    PRS 82.4%
  • luminal cell of prostate epithelium CL0002340
    CSI 1.2
    rCSI 6.2%
    PRS 74.6%
  • fraction A pre-pro B cell CL0002045
    CSI 1.2
    rCSI 1.4%
    PRS 80.7%
  • syncytiotrophoblast cell CL0000525
    CSI 1.2
    rCSI 3.5%
    PRS 75.6%
  • retinal ganglion cell CL0000740
    CSI 1.3
    rCSI 2.8%
    PRS 48.6%
  • intermediate monocyte CL0002393
    CSI 1.3
    rCSI 2.0%
    PRS 66.7%
  • basal cell of prostate epithelium CL0002341
    CSI 1.4
    rCSI 4.2%
    PRS 74.5%
  • OFF-bipolar cell CL0000750
    CSI 1.5
    rCSI 2.0%
    PRS 69.2%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 1.5
    rCSI 2.1%
    PRS 58.7%
  • alveolar macrophage CL0000583
    CSI 1.5
    rCSI 2.5%
    PRS 67.7%
  • basophil CL0000767
    CSI 1.5
    rCSI 3.3%
    PRS 79.8%
  • glandular epithelial cell CL0000150
    CSI 1.6
    rCSI 4.2%
    PRS 80.4%
  • mesenchymal lymphangioblast CL0005021
    CSI 1.6
    rCSI 42.5%
    PRS 83.0%
  • GABAergic neuron CL0000617
    CSI 1.6
    rCSI 5.5%
    PRS 47.6%
  • keratocyte CL0002363
    CSI 1.6
    rCSI 4.0%
    PRS 69.7%
  • retina horizontal cell CL0000745
    CSI 1.7
    rCSI 2.6%
    PRS 58.7%
  • enteroendocrine cell of small intestine CL0009006
    CSI 1.7
    rCSI 3.8%
    PRS 74.9%
  • choroid plexus epithelial cell CL0000706
    CSI 1.8
    rCSI 2.9%
    PRS 51.7%
  • stromal cell CL0000499
    CSI 1.8
    rCSI 5.0%
    PRS 59.0%
  • Langerhans cell CL0000453
    CSI 1.8
    rCSI 2.7%
    PRS 78.0%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 1.8
    rCSI 4.9%
    PRS 69.5%
  • mucus secreting cell CL0000319
    CSI 1.8
    rCSI 2.9%
    PRS 73.5%
  • endocrine cell CL0000163
    CSI 1.9
    rCSI 9.5%
    PRS 88.2%
  • kidney epithelial cell CL0002518
    CSI 1.9
    rCSI 3.6%
    PRS 82.1%
  • cerebellar granule cell CL0001031
    CSI 1.9
    rCSI 2.8%
    PRS 55.8%
  • endothelial cell of placenta CL0009092
    CSI 2.0
    rCSI 9.8%
    PRS 73.5%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 2.0
    rCSI 4.9%
    PRS 80.1%
  • eosinophil CL0000771
    CSI 2.1
    rCSI 13.5%
    PRS 87.9%
  • mucous neck cell CL0000651
    CSI 2.2
    rCSI 3.2%
    PRS 73.0%
  • plasmacytoid dendritic cell, human CL0001058
    CSI 2.2
    rCSI 1.6%
    PRS 65.3%
  • myelocyte CL0002193
    CSI 2.2
    rCSI 14.7%
    PRS 86.9%
  • neural crest cell CL0011012
    CSI 2.3
    rCSI 1.8%
    PRS 49.3%
  • renal alpha-intercalated cell CL0005011
    CSI 2.3
    rCSI 3.1%
    PRS 71.4%
  • ON-bipolar cell CL0000749
    CSI 2.5
    rCSI 3.7%
    PRS 63.8%
  • colonocyte CL1000347
    CSI 2.6
    rCSI 3.7%
    PRS 65.9%
  • elicited macrophage CL0000861
    CSI 2.6
    rCSI 2.4%
    PRS 71.4%
  • vasa recta descending limb cell CL1001285
    CSI 2.7
    rCSI 21.2%
    PRS 80.3%
  • enteroendocrine cell of colon CL0009042
    CSI 2.7
    rCSI 12.6%
    PRS 79.4%
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 2.7
    rCSI 6.6%
    PRS 42.7%
  • inflammatory macrophage CL0000863
    CSI 2.8
    rCSI 4.7%
    PRS 84.8%
  • basal cell of epithelium of trachea CL1000348
    CSI 2.8
    rCSI 19.7%
    PRS 76.6%
  • myoepithelial cell CL0000185
    CSI 2.8
    rCSI 7.1%
    PRS 70.4%
  • type L enteroendocrine cell CL0002279
    CSI 2.8
    rCSI 5.3%
    PRS 77.1%
  • megakaryocyte CL0000556
    CSI 2.9
    rCSI 12.4%
    PRS 74.7%
  • hepatocyte CL0000182
    CSI 2.9
    rCSI 5.2%
    PRS 61.5%
  • blood vessel smooth muscle cell CL0019018
    CSI 2.9
    rCSI 23.9%
    PRS 55.7%
  • rod bipolar cell CL0000751
    CSI 3.0
    rCSI 5.3%
    PRS 55.6%
  • BEST4+ enteroycte CL4030026
    CSI 3.1
    rCSI 3.8%
    PRS 64.1%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 3.1
    rCSI 16.4%
    PRS 71.9%
  • intrahepatic cholangiocyte CL0002538
    CSI 3.2
    rCSI 7.6%
    PRS 72.4%
  • lung ciliated cell CL1000271
    CSI 3.2
    rCSI 3.7%
    PRS 52.6%
  • extravillous trophoblast CL0008036
    CSI 3.3
    rCSI 4.1%
    PRS 59.1%
  • pulmonary ionocyte CL0017000
    CSI 3.4
    rCSI 4.1%
    PRS 70.0%
  • pancreatic stellate cell CL0002410
    CSI 3.4
    rCSI 19.8%
    PRS 71.3%
  • promonocyte CL0000559
    CSI 3.4
    rCSI 5.9%
    PRS 71.3%
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 3.5
    rCSI 30.0%
    PRS 59.4%
  • perivascular cell CL4033054
    CSI 3.5
    rCSI 4.8%
    PRS 68.6%
  • muscle cell CL0000187
    CSI 3.5
    rCSI 7.2%
    PRS 80.3%
  • common myeloid progenitor CL0000049
    CSI 3.6
    rCSI 2.9%
    PRS 63.9%
  • placental villous trophoblast CL2000060
    CSI 3.6
    rCSI 5.6%
    PRS 60.7%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 3.7
    rCSI 4.4%
    PRS 71.4%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 3.9
    rCSI 6.5%
    PRS 44.1%
  • erythroblast CL0000765
    CSI 4.0
    rCSI 10.5%
    PRS 73.6%
  • respiratory hillock cell CL4030023
    CSI 4.0
    rCSI 7.1%
    PRS 76.0%
  • lung endothelial cell CL1001567
    CSI 4.0
    rCSI 9.3%
    PRS 79.8%
  • sst GABAergic cortical interneuron CL4023017
    CSI 4.1
    rCSI 5.3%
    PRS 45.4%
  • skin fibroblast CL0002620
    CSI 4.2
    rCSI 3.6%
    PRS 67.9%
  • paneth cell CL0000510
    CSI 4.3
    rCSI 6.4%
    PRS 78.0%
  • kidney interstitial fibroblast CL1000692
    CSI 4.4
    rCSI 23.3%
    PRS 52.7%
  • IgA plasma cell CL0000987
    CSI 4.4
    rCSI 4.5%
    PRS 76.6%
  • kidney collecting duct intercalated cell CL1001432
    CSI 4.5
    rCSI 31.9%
    PRS 62.5%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [H1 0](/details-gene/3005), also known as H1F0, is a member of the H1 linker histone family encoded on chromosome 22. As a core [structural constituent of chromatin](/details-ontology/GO:0030527), its primary function is to bind to the linker DNA between nucleosomes, facilitating the compaction of chromatin into higher-order structures. This role is critical for processes such as [chromosome condensation](/details-ontology/GO:0030261) and the formation of transcriptionally silent [heterochromatin](/details-ontology/GO:0031507). Unlike canonical H1 histones, which are replication-dependent, [H1 0](/details-gene/3005) is expressed in a replication-independent manner and tends to accumulate in terminally differentiated and quiescent cells. **Overall**, its expression is most significant in cell types such as [tracheobronchial smooth muscle cell](/details-cell/CL0019019) and [peripheral nervous system neuron](/details-cell/CL2000032), highlighting its role in maintaining stable, non-proliferative cellular states. Its function is closely tied to major cell fate decisions, including [cellular senescence](/details-pathway/R-HSA-2559583) and [apoptosis](/details-pathway/R-HSA-109581). ## Cellular Roles and Expression Landscape The expression profile of [H1 0](/details-gene/3005) indicates a foundational role in maintaining the structural integrity of the genome across a wide array of cell types, with particular importance in terminally differentiated or quiescent lineages. **Overall**, the gene shows high significance in diverse cell populations, reflecting its fundamental biological function. Its top associations include contractile cells like [tracheobronchial smooth muscle cell](/details-cell/CL0019019) and [enteric smooth muscle cell](/details-cell/CL0002504), as well as post-mitotic cells such as [peripheral nervous system neuron](/details-cell/CL2000032). This pattern is consistent with the known function of [H1 0](/details-gene/3005) as a "replacement" histone that accumulates in non-dividing cells to stabilize chromatin architecture. High significance is also observed in secretory epithelial cells, including [pancreatic acinar cell](/details-cell/CL0002064) and [intestine goblet cell](/details-cell/CL0019031), and in various developmental and progenitor cells like [mesodermal cell](/details-cell/CL0000222) and [hematopoietic stem cell](/details-cell/CL0000037). This broad but distinct expression pattern suggests that [H1 0](/details-gene/3005) is not merely a ubiquitous structural protein but is a key factor in establishing and maintaining the specialized, condensed chromatin states that define cellular identity and restrict proliferative potential. ## Pathways and Molecular Function Functionally, [H1 0](/details-gene/3005) is intrinsically linked to the physical organization and regulation of chromatin. As a linker histone, its primary molecular functions involve binding to DNA, specifically [chromatin dna binding](/details-ontology/GO:0031490) and [nucleosomal dna binding](/details-ontology/GO:0031492). This binding activity is essential for the biological process of [nucleosome assembly](/details-ontology/GO:0006334) and the subsequent compaction into higher-order chromatin structures. The functional consequences of [H1 0](/details-gene/3005)-mediated chromatin condensation are profound, extending to major cellular programs that regulate cell fate. The Reactome pathway analysis strongly implicates [H1 0](/details-gene/3005) in [cellular senescence](/details-pathway/R-HSA-2559583), particularly in the [formation of senescence-associated heterochromatin foci (sahf)](/details-pathway/R-HSA-2559584). These SAHFs are compacted chromatin domains that stably silence genes promoting cell proliferation, thereby enforcing cell cycle arrest. Furthermore, [H1 0](/details-gene/3005) is involved in the [apoptotic execution phase](/details-pathway/R-HSA-75153), where large-scale chromatin condensation is a hallmark of programmed cell death. This dual involvement suggests that the accumulation of [H1 0](/details-gene/3005) is a key molecular event that facilitates the terminal exit from the cell cycle, either through differentiation, senescence, or apoptosis. ## Research Directions The role of [H1 0](/details-gene/3005) as a key regulator of chromatin compaction in non-proliferating cells provides a basis for several testable hypotheses. 1. The upregulation and accumulation of [H1 0](/details-gene/3005) is a critical and causative event in establishing the stable heterochromatin state of terminally differentiated cells, such as neurons and muscle cells, thereby locking in their cell fate and preventing de-differentiation. 2. During cellular stress or oncogenic signaling, the induction of [H1 0](/details-gene/3005) is a necessary step for the formation of Senescence-Associated Heterochromatin Foci (SAHF), and its absence would allow cells to bypass this critical tumor-suppressive barrier. A key experiment to test the second hypothesis would be to use a model of oncogene-induced senescence, for instance, by expressing H-RAS V12 in primary human fibroblasts. [H1 0](/details-gene/3005) expression could be ablated using CRISPR-Cas9 knockout or depleted via shRNA. The impact on senescence establishment would be monitored by quantifying SA-β-galactosidase activity, measuring the expression of cell cycle inhibitors like p16INK4a, and visualizing SAHF formation using DAPI staining and immunofluorescence for heterochromatin marks (e.g., H3K9me3). If cells lacking [H1 0](/details-gene/3005) fail to form proper SAHFs and exhibit a delayed or incomplete senescent arrest, it would provide strong evidence for its causal role in this process. **Therapeutic Potential:** [H1 0](/details-gene/3005) presents a dual-faceted therapeutic profile. In oncology, promoting the expression or function of [H1 0](/details-gene/3005) could represent a novel pro-senescence strategy to enforce a stable growth arrest in tumor cells. Therefore, small molecules that **activate** or stabilize [H1 0](/details-gene/3005) could be beneficial. Conversely, in the context of aging and fibrosis, where the accumulation of senescent cells is detrimental, targeted **inhibition** of [H1 0](/details-gene/3005) might prevent the formation of stable SAHFs, potentially facilitating the clearance of these cells or restoring tissue function. However, its widespread expression in essential, healthy, non-dividing cells like neurons would make systemic inhibition a significant safety concern, requiring highly targeted delivery systems.

Genular Protein ID: 883517988

Symbol: H10_HUMAN

Name: Histone H1.0

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 3084796

Title: Differential distribution of lysine and arginine residues in the closely related histones H1 and H5. Analysis of a human H1 gene.

PubMed ID: 3084796

DOI: 10.1016/0022-2836(86)90446-8

PubMed ID: 15461802

Title: A genome annotation-driven approach to cloning the human ORFeome.

PubMed ID: 15461802

DOI: 10.1186/gb-2004-5-10-r84

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 10591208

Title: The DNA sequence of human chromosome 22.

PubMed ID: 10591208

DOI: 10.1038/990031

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 18993075

Title: Evidence for insertional RNA editing in humans.

PubMed ID: 18993075

DOI: 10.1016/j.cub.2008.09.059

PubMed ID: 9582379

Title: The microheterogeneity of the mammalian H1(0) histone. Evidence for an age-dependent deamidation.

PubMed ID: 9582379

DOI: 10.1074/jbc.273.21.13324

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 27723750

Title: Serine is a new target residue for endogenous ADP-ribosylation on histones.

PubMed ID: 27723750

DOI: 10.1038/nchembio.2180

Sequence Information:

  • Length: 194
  • Mass: 20863
  • Checksum: 03ED6F01919F8BE1
  • Sequence:
  • MTENSTSAPA AKPKRAKASK KSTDHPKYSD MIVAAIQAEK NRAGSSRQSI QKYIKSHYKV 
    GENADSQIKL SIKRLVTTGV LKQTKGVGAS GSFRLAKSDE PKKSVAFKKT KKEIKKVATP 
    KKASKPKKAA SKAPTKKPKA TPVKKAKKKL AATPKKAKKP KTVKAKPVKA SKPKKAKPVK 
    PKAKSSAKRA GKKK