Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 105.6284
Cell Significance Index: -16.4300 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 61.9768
Cell Significance Index: -15.7200 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 37.4479
Cell Significance Index: -17.6800 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 33.5748
Cell Significance Index: -13.6400 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 14.2866
Cell Significance Index: -13.6400 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 13.8204
Cell Significance Index: -17.0400 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 6.2975
Cell Significance Index: -16.8700 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 4.3639
Cell Significance Index: -17.2200 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 2.2758
Cell Significance Index: 433.1000 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 1.1367
Cell Significance Index: 1026.3900 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.9854
Cell Significance Index: 59.1600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.9239
Cell Significance Index: 100.5000 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.8553
Cell Significance Index: 11.6700 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.7777
Cell Significance Index: 126.4900 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.5380
Cell Significance Index: 27.9500 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.5279
Cell Significance Index: 15.2100 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.4872
Cell Significance Index: 33.6900 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.4670
Cell Significance Index: 12.4700 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.4265
Cell Significance Index: 9.2400 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.4168
Cell Significance Index: 23.3900 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.3576
Cell Significance Index: 70.9700 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.3486
Cell Significance Index: 69.9400 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.3428
Cell Significance Index: 9.3300 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.3105
Cell Significance Index: 38.1800 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.3096
Cell Significance Index: 55.8200 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.2615
Cell Significance Index: 11.8600 - Cell Name: peg cell (CL4033014)
Fold Change: 0.2459
Cell Significance Index: 5.6800 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.2416
Cell Significance Index: 86.6700 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.2407
Cell Significance Index: 166.4800 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.2332
Cell Significance Index: 14.7000 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.1875
Cell Significance Index: 8.7400 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.1787
Cell Significance Index: 6.2800 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1781
Cell Significance Index: 17.6200 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.1733
Cell Significance Index: 12.2600 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.1694
Cell Significance Index: 23.2700 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.1655
Cell Significance Index: 90.3600 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1636
Cell Significance Index: 72.3200 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 0.1236
Cell Significance Index: 7.6000 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.1130
Cell Significance Index: 8.6800 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.1127
Cell Significance Index: 7.2700 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.1109
Cell Significance Index: 3.1000 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: 0.0930
Cell Significance Index: 2.3900 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.0619
Cell Significance Index: 1.3000 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.0592
Cell Significance Index: 1.4800 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.0559
Cell Significance Index: 4.1700 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.0479
Cell Significance Index: 1.0200 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.0255
Cell Significance Index: 3.2800 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0208
Cell Significance Index: 39.1100 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.0130
Cell Significance Index: 23.8900 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: 0.0115
Cell Significance Index: 0.5100 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.0113
Cell Significance Index: 17.3500 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0057
Cell Significance Index: 3.6200 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0008
Cell Significance Index: 1.0600 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0010
Cell Significance Index: -0.0400 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.0022
Cell Significance Index: -0.2900 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0036
Cell Significance Index: -2.6300 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.0069
Cell Significance Index: -0.2200 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0099
Cell Significance Index: -4.5000 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0161
Cell Significance Index: -12.1500 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0194
Cell Significance Index: -14.3700 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.0263
Cell Significance Index: -1.0000 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0282
Cell Significance Index: -15.9300 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0295
Cell Significance Index: -4.2900 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0313
Cell Significance Index: -19.5700 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0330
Cell Significance Index: -3.9000 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0424
Cell Significance Index: -7.2400 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0447
Cell Significance Index: -12.8500 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.0564
Cell Significance Index: -6.5700 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0610
Cell Significance Index: -6.2300 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.0620
Cell Significance Index: -4.1700 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.0633
Cell Significance Index: -2.2000 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0880
Cell Significance Index: -18.5400 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.0969
Cell Significance Index: -1.6600 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: -0.1004
Cell Significance Index: -1.2500 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1024
Cell Significance Index: -11.7300 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.1213
Cell Significance Index: -3.1000 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.1309
Cell Significance Index: -2.1900 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.1373
Cell Significance Index: -14.3000 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -0.1431
Cell Significance Index: -3.8400 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.1457
Cell Significance Index: -3.8300 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.1470
Cell Significance Index: -7.7200 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.1576
Cell Significance Index: -8.2100 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.1647
Cell Significance Index: -10.1000 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.1661
Cell Significance Index: -1.9800 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.1704
Cell Significance Index: -13.5000 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -0.2093
Cell Significance Index: -5.0200 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -0.2206
Cell Significance Index: -4.7200 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.2411
Cell Significance Index: -2.2200 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.2790
Cell Significance Index: -6.1100 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.3432
Cell Significance Index: -9.1800 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.3538
Cell Significance Index: -10.4200 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.3701
Cell Significance Index: -10.6100 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -0.3708
Cell Significance Index: -13.6100 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -0.3774
Cell Significance Index: -11.0800 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: -0.3836
Cell Significance Index: -4.1700 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.3876
Cell Significance Index: -11.0600 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.3882
Cell Significance Index: -12.7100 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -0.4047
Cell Significance Index: -20.4500 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: -0.4058
Cell Significance Index: -4.6100 - Cell Name: neural progenitor cell (CL0011020)
Fold Change: -0.4063
Cell Significance Index: -4.0200
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 1418192741
Symbol: DNLI3_HUMAN
Name: DNA ligase 3
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7760816
Title: Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination.
PubMed ID: 7760816
PubMed ID: 7565692
Title: Mammalian DNA ligase III: molecular cloning, chromosomal localization, and expression in spermatocytes undergoing meiotic recombination.
PubMed ID: 7565692
PubMed ID: 20843780
Title: Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.
PubMed ID: 20843780
DOI: 10.1093/nar/gkq750
PubMed ID: 16625196
Title: DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.
PubMed ID: 16625196
DOI: 10.1038/nature04689
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 10207110
Title: The human DNA ligase III gene encodes nuclear and mitochondrial proteins.
PubMed ID: 10207110
PubMed ID: 17081983
Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
PubMed ID: 17081983
PubMed ID: 16964243
Title: A probability-based approach for high-throughput protein phosphorylation analysis and site localization.
PubMed ID: 16964243
DOI: 10.1038/nbt1240
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 19336415
Title: Human DNA polymerase beta polymorphism, Arg137Gln, impairs its polymerase activity and interaction with PCNA and the cellular base excision repair capacity.
PubMed ID: 19336415
DOI: 10.1093/nar/gkp201
PubMed ID: 19690332
Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
PubMed ID: 19690332
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 21406692
Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
PubMed ID: 21406692
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 24674627
Title: Overexpression of DNA ligase III in mitochondria protects cells against oxidative stress and improves mitochondrial DNA base excision repair.
PubMed ID: 24674627
PubMed ID: 11281714
Title: Expression, purification, and biophysical characterization of the BRCT domain of human DNA ligase IIIalpha.
PubMed ID: 11281714
PubMed ID: 15288782
Title: Solution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalpha.
PubMed ID: 15288782
PubMed ID: 20518483
Title: Human DNA ligase III recognizes DNA ends by dynamic switching between two DNA-bound states.
PubMed ID: 20518483
DOI: 10.1021/bi100503w
PubMed ID: 21652643
Title: The structural basis for partitioning of the XRCC1/DNA ligase III-? BRCT-mediated dimer complexes.
PubMed ID: 21652643
DOI: 10.1093/nar/gkr419
PubMed ID: 16959974
Title: The consensus coding sequences of human breast and colorectal cancers.
PubMed ID: 16959974
PubMed ID: 33855352
Title: Biallelic variants in LIG3 cause a novel mitochondrial neurogastrointestinal encephalomyopathy.
PubMed ID: 33855352
PubMed ID: 34165507
Title: Myopathic mitochondrial DNA depletion syndrome associated with biallelic variants in LIG3.
PubMed ID: 34165507
Sequence Information:
- Length: 1009
- Mass: 112907
- Checksum: 0E4057E33C3F19A6
- Sequence:
MSLAFKIFFP QTLRALSRKE LCLFRKHHWR DVRQFSQWSE TDLLHGHPLF LRRKPVLSFQ GSHLRSRATY LVFLPGLHVG LCSGPCEMAE QRFCVDYAKR GTAGCKKCKE KIVKGVCRIG KVVPNPFSES GGDMKEWYHI KCMFEKLERA RATTKKIEDL TELEGWEELE DNEKEQITQH IADLSSKAAG TPKKKAVVQA KLTTTGQVTS PVKGASFVTS TNPRKFSGFS AKPNNSGEAP SSPTPKRSLS SSKCDPRHKD CLLREFRKLC AMVADNPSYN TKTQIIQDFL RKGSAGDGFH GDVYLTVKLL LPGVIKTVYN LNDKQIVKLF SRIFNCNPDD MARDLEQGDV SETIRVFFEQ SKSFPPAAKS LLTIQEVDEF LLRLSKLTKE DEQQQALQDI ASRCTANDLK CIIRLIKHDL KMNSGAKHVL DALDPNAYEA FKASRNLQDV VERVLHNAQE VEKEPGQRRA LSVQASLMTP VQPMLAEACK SVEYAMKKCP NGMFSEIKYD GERVQVHKNG DHFSYFSRSL KPVLPHKVAH FKDYIPQAFP GGHSMILDSE VLLIDNKTGK PLPFGTLGVH KKAAFQDANV CLFVFDCIYF NDVSLMDRPL CERRKFLHDN MVEIPNRIMF SEMKRVTKAL DLADMITRVI QEGLEGLVLK DVKGTYEPGK RHWLKVKKDY LNEGAMADTA DLVVLGAFYG QGSKGGMMSI FLMGCYDPGS QKWCTVTKCA GGHDDATLAR LQNELDMVKI SKDPSKIPSW LKVNKIYYPD FIVPDPKKAA VWEITGAEFS KSEAHTADGI SIRFPRCTRI RDDKDWKSAT NLPQLKELYQ LSKEKADFTV VAGDEGSSTT GGSSEENKGP SGSAVSRKAP SKPSASTKKA EGKLSNSNSK DGNMQTAKPS AMKVGEKLAT KSSPVKVGEK RKAADETLCQ TKVLLDIFTG VRLYLPPSTP DFSRLRRYFV AFDGDLVQEF DMTSATHVLG SRDKNPAAQQ VSPEWIWACI RKRRLVAPC
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.