Details for: LEF1

Gene ID: 51176

Symbol: LEF1

Ensembl ID: ENSG00000138795

Description: lymphoid enhancer binding factor 1

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 65.3186
    Cell Significance Index: -10.1600
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 41.9487
    Cell Significance Index: -10.6400
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 25.5011
    Cell Significance Index: -10.3600
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 23.2567
    Cell Significance Index: -10.9800
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 11.6471
    Cell Significance Index: -11.1200
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 8.3296
    Cell Significance Index: -10.2700
  • Cell Name: DN3 thymocyte (CL0000807)
    Fold Change: 4.6296
    Cell Significance Index: 46.4200
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 4.1286
    Cell Significance Index: -11.0600
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: 3.5062
    Cell Significance Index: 93.9500
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 3.2428
    Cell Significance Index: -9.9600
  • Cell Name: ovarian surface epithelial cell (CL2000064)
    Fold Change: 3.0698
    Cell Significance Index: 14.9300
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 2.7568
    Cell Significance Index: 177.8600
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 2.7040
    Cell Significance Index: -10.6700
  • Cell Name: T-helper 22 cell (CL0001042)
    Fold Change: 2.1295
    Cell Significance Index: 6.4900
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 1.3597
    Cell Significance Index: 28.4600
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 1.0611
    Cell Significance Index: 210.5800
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.8910
    Cell Significance Index: 18.9800
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.7095
    Cell Significance Index: 8.0600
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 0.6312
    Cell Significance Index: 35.4200
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.6269
    Cell Significance Index: 119.3000
  • Cell Name: central memory CD4-positive, alpha-beta T cell (CL0000904)
    Fold Change: 0.5282
    Cell Significance Index: 4.6200
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: 0.4927
    Cell Significance Index: 6.3100
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 0.4724
    Cell Significance Index: 24.6100
  • Cell Name: leptomeningeal cell (CL0000708)
    Fold Change: 0.4260
    Cell Significance Index: 9.1100
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.4181
    Cell Significance Index: 14.5300
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.3851
    Cell Significance Index: 23.1200
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.3752
    Cell Significance Index: 11.0200
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.3544
    Cell Significance Index: 38.5500
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: 0.3421
    Cell Significance Index: 35.6200
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.3299
    Cell Significance Index: 53.6600
  • Cell Name: endothelial cell of uterus (CL0009095)
    Fold Change: 0.3290
    Cell Significance Index: 2.0600
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 0.2927
    Cell Significance Index: 8.1800
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.2277
    Cell Significance Index: 22.5200
  • Cell Name: naive regulatory T cell (CL0002677)
    Fold Change: 0.2156
    Cell Significance Index: 1.9400
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.2135
    Cell Significance Index: 192.7700
  • Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
    Fold Change: 0.1636
    Cell Significance Index: 4.0800
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.1446
    Cell Significance Index: 63.9100
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: 0.1430
    Cell Significance Index: 20.7800
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.1214
    Cell Significance Index: 66.3000
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.1008
    Cell Significance Index: 6.9700
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.0852
    Cell Significance Index: 58.9100
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.0731
    Cell Significance Index: 9.3700
  • Cell Name: mature alpha-beta T cell (CL0000791)
    Fold Change: 0.0688
    Cell Significance Index: 0.3800
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: 0.0640
    Cell Significance Index: 1.6000
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.0633
    Cell Significance Index: 1.0600
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0615
    Cell Significance Index: 115.8800
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: 0.0175
    Cell Significance Index: 7.9600
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.0102
    Cell Significance Index: 0.2200
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.0040
    Cell Significance Index: -0.1400
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0066
    Cell Significance Index: -12.1200
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0077
    Cell Significance Index: -0.4700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0079
    Cell Significance Index: -1.0800
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0079
    Cell Significance Index: -12.2000
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0096
    Cell Significance Index: -12.9900
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0145
    Cell Significance Index: -11.0000
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0151
    Cell Significance Index: -9.6000
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: -0.0158
    Cell Significance Index: -5.6600
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0162
    Cell Significance Index: -11.9000
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0168
    Cell Significance Index: -12.4700
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0179
    Cell Significance Index: -11.1900
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0205
    Cell Significance Index: -11.5400
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0248
    Cell Significance Index: -4.9700
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: -0.0280
    Cell Significance Index: -1.2700
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: -0.0288
    Cell Significance Index: -0.8300
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.0301
    Cell Significance Index: -0.7700
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0311
    Cell Significance Index: -8.9500
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: -0.0374
    Cell Significance Index: -6.7400
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: -0.0505
    Cell Significance Index: -5.9600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0528
    Cell Significance Index: -5.3900
  • Cell Name: CD4-positive, alpha-beta thymocyte (CL0000810)
    Fold Change: -0.0539
    Cell Significance Index: -0.9300
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.0568
    Cell Significance Index: -1.8200
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0569
    Cell Significance Index: -12.0000
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.0661
    Cell Significance Index: -7.7000
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0679
    Cell Significance Index: -11.5900
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: -0.0816
    Cell Significance Index: -10.0300
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.0838
    Cell Significance Index: -10.8300
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: -0.0929
    Cell Significance Index: -1.3300
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.0940
    Cell Significance Index: -1.9500
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1040
    Cell Significance Index: -11.9200
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -0.1053
    Cell Significance Index: -2.7700
  • Cell Name: epithelial cell of nephron (CL1000449)
    Fold Change: -0.1185
    Cell Significance Index: -1.0100
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.1202
    Cell Significance Index: -3.5400
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.1303
    Cell Significance Index: -10.0000
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.1355
    Cell Significance Index: -10.1000
  • Cell Name: radial glial cell (CL0000681)
    Fold Change: -0.1449
    Cell Significance Index: -0.8600
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.1455
    Cell Significance Index: -6.8400
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.1463
    Cell Significance Index: -7.3900
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.1530
    Cell Significance Index: -12.1200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.1628
    Cell Significance Index: -10.9500
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.1733
    Cell Significance Index: -10.6500
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.1874
    Cell Significance Index: -7.6800
  • Cell Name: central memory CD8-positive, alpha-beta T cell (CL0000907)
    Fold Change: -0.1909
    Cell Significance Index: -1.4200
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.1929
    Cell Significance Index: -5.1600
  • Cell Name: CD4-positive, alpha-beta memory T cell (CL0000897)
    Fold Change: -0.1935
    Cell Significance Index: -1.8600
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: -0.2004
    Cell Significance Index: -3.0200
  • Cell Name: naive thymus-derived CD4-positive, alpha-beta T cell (CL0000895)
    Fold Change: -0.2086
    Cell Significance Index: -1.8000
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: -0.2247
    Cell Significance Index: -11.6700
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: -0.2270
    Cell Significance Index: -11.9200
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.2440
    Cell Significance Index: -10.7900
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.2640
    Cell Significance Index: -12.3100

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** 1. **DNA Binding**: LEF1 exhibits specific DNA binding capabilities, allowing it to regulate gene expression by interacting with target gene promoters. 2. **Wnt/β-catenin Pathway Modulation**: LEF1 interacts with β-catenin, a key component of the Wnt signaling pathway, to regulate Wnt target gene expression. 3. **Transcriptional Regulation**: LEF1 acts as a transcriptional activator or repressor, depending on the context, to modulate the expression of target genes. 4. **Cellular Differentiation**: LEF1 is involved in the differentiation of various cell types, including immune cells, neural cells, and muscle cells. 5. **Tissue Development**: LEF1 plays a critical role in the development of various tissues and organs, including the immune system, cardiovascular system, and nervous system. **Pathways and Functions** LEF1 is involved in multiple signaling pathways, including: 1. **Wnt/β-catenin Pathway**: LEF1 interacts with β-catenin to regulate Wnt target gene expression. 2. **β-catenin-independent Wnt Signaling**: LEF1 modulates Wnt signaling through interactions with other proteins, such as β-catenin and TCF/LEF transcription factors. 3. **Cardiogenesis**: LEF1 is involved in the development of the cardiovascular system, particularly in the formation of cardiac tissue. 4. **Neurogenesis**: LEF1 plays a role in the development and maintenance of neural tissue. 5. **Immune Cell Development**: LEF1 is involved in the development and differentiation of immune cells, including T cells and B cells. **Clinical Significance** Dysregulation of LEF1 has been implicated in various diseases, including: 1. **Cancer**: LEF1 is overexpressed in certain types of cancer, including leukemia and lymphoma. 2. **Cardiovascular Disease**: LEF1 is involved in the development of cardiovascular disease, particularly in the formation of atherosclerotic plaques. 3. **Neurological Disorders**: LEF1 is implicated in the development of neurological disorders, such as Alzheimer's disease and Parkinson's disease. 4. **Immune System Disorders**: LEF1 is involved in the development of immune system disorders, including autoimmune diseases and immune deficiency syndromes. In conclusion, LEF1 is a transcription factor that plays a critical role in regulating various cellular processes, including cell proliferation, differentiation, and survival. Its involvement in multiple signaling pathways highlights the complexity of its regulatory functions, and dysregulation of LEF1 has been implicated in various diseases. Further research is needed to fully understand the mechanisms of LEF1 and its role in human disease.

Genular Protein ID: 91882950

Symbol: LEF1_HUMAN

Name: T cell-specific transcription factor 1-alpha

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 2010090

Title: A thymus-specific member of the HMG protein family regulates the human T cell receptor C alpha enhancer.

PubMed ID: 2010090

DOI: 10.1101/gad.5.4.656

PubMed ID: 10756202

Title: The human LEF-1 gene contains a promoter preferentially active in lymphocytes and encodes multiple isoforms derived from alternative splicing.

PubMed ID: 10756202

DOI: 10.1093/nar/28.9.1994

PubMed ID: 19653274

Title: Lef-1 isoforms regulate different target genes and reduce cellular adhesion.

PubMed ID: 19653274

DOI: 10.1002/ijc.24802

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15815621

Title: Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

PubMed ID: 15815621

DOI: 10.1038/nature03466

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 9119228

Title: ALY, a context-dependent coactivator of LEF-1 and AML-1, is required for TCRalpha enhancer function.

PubMed ID: 9119228

DOI: 10.1101/gad.11.5.640

PubMed ID: 9488439

Title: Two members of the Tcf family implicated in Wnt/b-catenin signaling during embryogenesis in the mouse.

PubMed ID: 9488439

DOI: 10.1128/mcb.18.3.1248

PubMed ID: 9751710

Title: Transcriptional repression by AML1 and LEF-1 is mediated by the TLE/Groucho corepressors.

PubMed ID: 9751710

DOI: 10.1073/pnas.95.20.11590

PubMed ID: 11326276

Title: Beta-catenin-sensitive isoforms of lymphoid enhancer factor-1 are selectively expressed in colon cancer.

PubMed ID: 11326276

DOI: 10.1038/ng0501-53

PubMed ID: 11266540

Title: All Tcf HMG box transcription factors interact with Groucho-related co-repressors.

PubMed ID: 11266540

DOI: 10.1093/nar/29.7.1410

PubMed ID: 12192039

Title: I-mfa domain proteins interact with Axin and affect its regulation of the Wnt and c-Jun N-terminal kinase signaling pathways.

PubMed ID: 12192039

DOI: 10.1128/mcb.22.18.6393-6405.2002

PubMed ID: 12556497

Title: Regulation of lymphoid enhancer factor 1/T-cell factor by mitogen-activated protein kinase-related Nemo-like kinase-dependent phosphorylation in Wnt/beta-catenin signaling.

PubMed ID: 12556497

DOI: 10.1128/mcb.23.4.1379-1389.2003

PubMed ID: 14759258

Title: An unappreciated role for RNA surveillance.

PubMed ID: 14759258

DOI: 10.1186/gb-2004-5-2-r8

PubMed ID: 19304756

Title: Dazap2 modulates transcription driven by the Wnt effector TCF-4.

PubMed ID: 19304756

DOI: 10.1093/nar/gkp179

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 16959974

Title: The consensus coding sequences of human breast and colorectal cancers.

PubMed ID: 16959974

DOI: 10.1126/science.1133427

Sequence Information:

  • Length: 399
  • Mass: 44201
  • Checksum: D480D440698EEFE3
  • Sequence:
  • MPQLSGGGGG GGGDPELCAT DEMIPFKDEG DPQKEKIFAE ISHPEEEGDL ADIKSSLVNE 
    SEIIPASNGH EVARQAQTSQ EPYHDKAREH PDDGKHPDGG LYNKGPSYSS YSGYIMMPNM 
    NNDPYMSNGS LSPPIPRTSN KVPVVQPSHA VHPLTPLITY SDEHFSPGSH PSHIPSDVNS 
    KQGMSRHPPA PDIPTFYPLS PGGVGQITPP LGWQGQPVYP ITGGFRQPYP SSLSVDTSMS 
    RFSHHMIPGP PGPHTTGIPH PAIVTPQVKQ EHPHTDSDLM HVKPQHEQRK EQEPKRPHIK 
    KPLNAFMLYM KEMRANVVAE CTLKESAAIN QILGRRWHAL SREEQAKYYE LARKERQLHM 
    QLYPGWSARD NYGKKKKRKR EKLQESASGT GPRMTAAYI

Genular Protein ID: 257884789

Symbol: Q659G9_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 69
  • Mass: 8251
  • Checksum: CBF29BD0C3287867
  • Sequence:
  • QILGRRWHAL SREEQAKYYE LARKERQLHM QLYPGWSARD NYGKKKKRKR EKLQESASGT 
    GPRMTAAYI

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.