Details for: PDGFB
Gene ID: 5155
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: PDGFB
Ensembl ID: ENSG00000100311
Description: platelet derived growth factor subunit B
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 8.44rCSI 41.59%PRS 90.25
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CSI 7.56rCSI 20.83%PRS 79.75
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CSI 6.91rCSI 30.39%PRS 72.75
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CSI 6.72rCSI 35.34%PRS 85.01
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CSI 5.15rCSI 18.3%PRS 86.74
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CSI 4.82rCSI 10.76%PRS 90.35
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CSI 4.52rCSI 24.7%PRS 80.31
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CSI 4.23rCSI 7.32%PRS 76.49
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CSI 3.84rCSI 7.33%PRS 91.91
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CSI 3.75rCSI 10.66%PRS 79.94
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CSI 3.69rCSI 4.45%PRS 90.67
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CSI 3rCSI 6.22%PRS 81.17
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CSI 2.41rCSI 9.74%PRS 84.27
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CSI 2.33rCSI 3.31%PRS 81.32
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CSI 2.3rCSI 2.89%PRS 91.84
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CSI 2.3rCSI 2.85%PRS 82.29
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CSI 2.28rCSI 5.94%PRS 85.15
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CSI 2.27rCSI 43.86%PRS 89.99
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CSI 2.2rCSI 12.82%PRS 86.98
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CSI 2.1rCSI 14.4%PRS 89.1
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CSI 1.98rCSI 5.01%PRS 87.99
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CSI 1.95rCSI 3.12%PRS 87.21
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CSI 1.93rCSI 4.26%PRS 87.3
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CSI 1.87rCSI 5.97%PRS 82
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CSI 1.84rCSI 4.76%PRS 80.13
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CSI 1.81rCSI 5.25%PRS 83.2
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CSI 1.7rCSI 3.96%PRS 92.41
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CSI 1.66rCSI 2.41%PRS 94.29
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CSI 1.31rCSI 6.15%PRS 93.27
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CSI 1.16rCSI 5.37%PRS 93.68
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 1671928721
Symbol: PDGFB_HUMAN
Name: Platelet-derived growth factor subunit B
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 6740330
Title: Transforming potential of human c-sis nucleotide sequences encoding platelet-derived growth factor.
PubMed ID: 6740330
PubMed ID: 4033772
Title: Cultured human endothelial cells express platelet-derived growth factor B chain: cDNA cloning and structural analysis.
PubMed ID: 4033772
DOI: 10.1038/316748a0
PubMed ID: 2991848
Title: Nucleotide sequence of transforming human c-sis cDNA clones with homology to platelet-derived growth factor.
PubMed ID: 2991848
PubMed ID: 3472769
Title: Oncogenic potential of the human platelet-derived growth factor transcriptional unit.
PubMed ID: 3472769
PubMed ID: 3517869
Title: Structure and sequence of the human c-sis/platelet-derived growth factor 2 (SIS/PDGF2) transcriptional unit.
PubMed ID: 3517869
PubMed ID: 15461802
Title: A genome annotation-driven approach to cloning the human ORFeome.
PubMed ID: 15461802
PubMed ID: 10591208
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7659502
Title: A novel human c-sis mRNA species is transcribed from a promoter in c-sis intron 1 and contains the code for an alternative PDGF B-like protein.
PubMed ID: 7659502
PubMed ID: 8988177
Title: Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma.
PubMed ID: 8988177
DOI: 10.1038/ng0197-95
PubMed ID: 6327048
Title: Nucleotide sequence analysis identifies the human c-sis proto-oncogene as a structural gene for platelet-derived growth factor.
PubMed ID: 6327048
PubMed ID: 3456904
Title: The human osteosarcoma cell line U-2 OS expresses a 3.8 kilobase mRNA which codes for the sequence of the PDGF-B chain.
PubMed ID: 3456904
PubMed ID: 6306471
Title: Platelet-derived growth factor is structurally related to the putative transforming protein p28sis of simian sarcoma virus.
PubMed ID: 6306471
DOI: 10.1038/304035a0
PubMed ID: 6844921
Title: Human platelet-derived growth factor (PDGF): amino-terminal amino acid sequence.
PubMed ID: 6844921
PubMed ID: 6329745
Title: The c-sis gene encodes a precursor of the B chain of platelet-derived growth factor.
PubMed ID: 6329745
PubMed ID: 1661670
Title: Two PDGF-B chain residues, arginine 27 and isoleucine 30, mediate receptor binding and activation.
PubMed ID: 1661670
PubMed ID: 1317862
Title: Assignment of interchain disulfide bonds in platelet-derived growth factor (PDGF) and evidence for agonist activity of monomeric PDGF.
PubMed ID: 1317862
PubMed ID: 11331882
PubMed ID: 12660034
Title: Dermatofibrosarcoma protuberans of breast.
PubMed ID: 12660034
PubMed ID: 15053742
Title: The mosaic receptor sorLA/LR11 binds components of the plasminogen-activating system and platelet-derived growth factor-BB similarly to LRP1 (low-density lipoprotein receptor-related protein), but mediates slow internalization of bound ligand.
PubMed ID: 15053742
DOI: 10.1042/bj20040149
PubMed ID: 16393139
Title: Tumour necrosis factor alpha-converting enzyme mediates ectodomain shedding of Vps10p-domain receptor family members.
PubMed ID: 16393139
DOI: 10.1042/bj20051364
PubMed ID: 26599395
Title: Functional characterization of germline mutations in PDGFB and PDGFRB in primary familial brain calcification.
PubMed ID: 26599395
PubMed ID: 34530889
Title: KAI1(CD82) is a key molecule to control angiogenesis and switch angiogenic milieu to quiescent state.
PubMed ID: 34530889
PubMed ID: 18483217
Title: Role of platelet-derived growth factors in physiology and medicine.
PubMed ID: 18483217
DOI: 10.1101/gad.1653708
PubMed ID: 1396586
Title: Crystal structure of human platelet-derived growth factor BB.
PubMed ID: 1396586
PubMed ID: 20534510
Title: Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex.
PubMed ID: 20534510
PubMed ID: 23913003
Title: Mutations in the gene encoding PDGF-B cause brain calcifications in humans and mice.
PubMed ID: 23913003
DOI: 10.1038/ng.2723
Sequence Information:
- Length: 241
- Mass: 27283
- Checksum: 9F9A3474CE203C0B
- Sequence:
MNRCWALFLS LCCYLRLVSA EGDPIPEELY EMLSDHSIRS FDDLQRLLHG DPGEEDGAEL DLNMTRSHSG GELESLARGR RSLGSLTIAE PAMIAECKTR TEVFEISRRL IDRTNANFLV WPPCVEVQRC SGCCNNRNVQ CRPTQVQLRP VQVRKIEIVR KKPIFKKATV TLEDHLACKC ETVAAARPVT RSPGGSQEQR AKTPQTRVTI RTVRVRRPPK GKHRKFKHTH DKTALKETLG A