Details for: PSMC3

Gene ID: 5702

Symbol: PSMC3

Ensembl ID: ENSG00000165916

Description: proteasome 26S subunit, ATPase 3

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 238.2587
    Cell Significance Index: -37.0600
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 186.0486
    Cell Significance Index: -47.1900
  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 131.3759
    Cell Significance Index: -54.1200
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 117.9143
    Cell Significance Index: -55.6700
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 113.0811
    Cell Significance Index: -45.9400
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 103.3855
    Cell Significance Index: -53.1800
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 83.3206
    Cell Significance Index: -55.9100
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 48.5995
    Cell Significance Index: -46.4000
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 43.6918
    Cell Significance Index: -53.8700
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 14.5614
    Cell Significance Index: -57.4600
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 14.4278
    Cell Significance Index: -38.6500
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 12.4892
    Cell Significance Index: -38.3600
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 7.2695
    Cell Significance Index: -15.9100
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 3.4190
    Cell Significance Index: 236.4400
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 2.0622
    Cell Significance Index: 123.8100
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 2.0549
    Cell Significance Index: 22.3400
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 1.8501
    Cell Significance Index: 38.7300
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 1.7519
    Cell Significance Index: 284.9400
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 1.6124
    Cell Significance Index: 56.0300
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 1.5668
    Cell Significance Index: 12.5100
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 1.4645
    Cell Significance Index: 68.2800
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 1.3288
    Cell Significance Index: 34.9400
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 1.2372
    Cell Significance Index: 169.9000
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 1.2006
    Cell Significance Index: 530.8100
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 1.1988
    Cell Significance Index: 32.6300
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 1.0672
    Cell Significance Index: 131.2300
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 1.0332
    Cell Significance Index: 48.5600
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 1.0261
    Cell Significance Index: 560.3800
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 1.0137
    Cell Significance Index: 75.5500
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.9764
    Cell Significance Index: 176.0100
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.9398
    Cell Significance Index: 120.4800
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.9098
    Cell Significance Index: 58.7000
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.8917
    Cell Significance Index: 105.1600
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.8809
    Cell Significance Index: 62.3000
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.8680
    Cell Significance Index: 112.1500
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.6453
    Cell Significance Index: 33.8800
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 0.6133
    Cell Significance Index: 17.5800
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.5506
    Cell Significance Index: 15.8700
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.5339
    Cell Significance Index: 15.6800
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.5099
    Cell Significance Index: 23.1100
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.5026
    Cell Significance Index: 5.7100
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.4929
    Cell Significance Index: 25.6100
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.4730
    Cell Significance Index: 90.0200
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: 0.4578
    Cell Significance Index: 8.0900
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.4494
    Cell Significance Index: 12.0000
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.4295
    Cell Significance Index: 9.3100
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 0.4202
    Cell Significance Index: 21.8900
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.3784
    Cell Significance Index: 23.8500
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.3345
    Cell Significance Index: 57.1200
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.2685
    Cell Significance Index: 53.8700
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: 0.2373
    Cell Significance Index: 7.6000
  • Cell Name: basal cell of epidermis (CL0002187)
    Fold Change: 0.1587
    Cell Significance Index: 2.4100
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.1130
    Cell Significance Index: 22.4300
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.1117
    Cell Significance Index: 3.9300
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: 0.0901
    Cell Significance Index: 1.3500
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.0535
    Cell Significance Index: 0.9000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0452
    Cell Significance Index: 34.1900
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: 0.0174
    Cell Significance Index: 12.7300
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.0111
    Cell Significance Index: 3.9700
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0167
    Cell Significance Index: -12.4000
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0199
    Cell Significance Index: -12.4200
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0203
    Cell Significance Index: -38.3000
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0362
    Cell Significance Index: -3.7000
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0379
    Cell Significance Index: -69.8500
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0422
    Cell Significance Index: -57.4000
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0426
    Cell Significance Index: -65.5300
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: -0.0453
    Cell Significance Index: -31.3000
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0521
    Cell Significance Index: -29.3800
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0608
    Cell Significance Index: -38.6400
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.1095
    Cell Significance Index: -49.7100
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1186
    Cell Significance Index: -13.5900
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.1334
    Cell Significance Index: -28.1000
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.1481
    Cell Significance Index: -42.6200
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.1579
    Cell Significance Index: -18.4000
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: -0.1868
    Cell Significance Index: -18.4800
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.2259
    Cell Significance Index: -5.7700
  • Cell Name: peg cell (CL4033014)
    Fold Change: -0.2987
    Cell Significance Index: -6.9000
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.3228
    Cell Significance Index: -46.9200
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.3763
    Cell Significance Index: -23.1300
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: -0.3969
    Cell Significance Index: -3.6600
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.4026
    Cell Significance Index: -11.2500
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.4193
    Cell Significance Index: -11.2200
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.4241
    Cell Significance Index: -33.5900
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.4471
    Cell Significance Index: -51.0400
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.4813
    Cell Significance Index: -10.2500
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -0.5145
    Cell Significance Index: -7.0200
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.5218
    Cell Significance Index: -6.2200
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.5526
    Cell Significance Index: -57.5400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.5546
    Cell Significance Index: -31.1200
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.6215
    Cell Significance Index: -47.7000
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.6603
    Cell Significance Index: -19.4500
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.7122
    Cell Significance Index: -47.8900
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -0.7476
    Cell Significance Index: -6.2800
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.8067
    Cell Significance Index: -14.9100
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.8922
    Cell Significance Index: -15.2900
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.8990
    Cell Significance Index: -55.1200
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.9095
    Cell Significance Index: -40.2300
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.9181
    Cell Significance Index: -22.9500
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: -0.9370
    Cell Significance Index: -12.0000
  • Cell Name: endothelial cell of placenta (CL0009092)
    Fold Change: -0.9774
    Cell Significance Index: -5.9100

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** 1. **Proteasome subunit**: PSMC3 is a subunit of the 26S proteasome complex, which is a large protein complex responsible for degrading and recycling proteins within cells. 2. **ATPase activity**: PSMC3 has ATPase activity, which is essential for the degradation of proteins by the proteasome complex. 3. **Cellular localization**: PSMC3 is primarily localized to the cytosol of cells, where it plays a crucial role in protein degradation and recycling. 4. **Signaling pathways**: PSMC3 is involved in various signaling pathways, including the adaptive immune response, apoptosis, and cell cycle regulation. **Pathways and Functions** 1. **Adaptive immune response**: PSMC3 plays a crucial role in the adaptive immune response by regulating the degradation and presentation of antigens to T-cells. 2. **Apoptosis**: PSMC3 is involved in the regulation of apoptosis by degrading and recycling pro-apoptotic proteins. 3. **Cell cycle regulation**: PSMC3 regulates the cell cycle by degrading and recycling proteins involved in cell cycle progression. 4. **Antigen presentation**: PSMC3 is involved in the presentation of antigens to T-cells by degrading and presenting antigens to the proteasome complex. 5. **Signaling pathways**: PSMC3 is involved in various signaling pathways, including the Wnt/β-catenin pathway, the Hedgehog pathway, and the Notch pathway. **Clinical Significance** 1. **Cancer**: Mutations or alterations in the PSMC3 gene have been linked to various types of cancer, including breast cancer, lung cancer, and colon cancer. 2. **Autoimmune disorders**: PSMC3 has been implicated in autoimmune disorders, such as rheumatoid arthritis and multiple sclerosis. 3. **Neurodegenerative diseases**: PSMC3 has been implicated in neurodegenerative diseases, such as Alzheimer's disease and Parkinson's disease. 4. **Infectious diseases**: PSMC3 has been implicated in infectious diseases, such as HIV-1 infection and tuberculosis. In conclusion, the PSMC3 gene plays a crucial role in various cellular processes, including protein degradation, antigen presentation, and signaling pathways. Mutations or alterations in the PSMC3 gene have been linked to various diseases, highlighting the importance of this gene in human health and disease.

Genular Protein ID: 2272370181

Symbol: PRS6A_HUMAN

Name: 26S proteasome regulatory subunit 6A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8419915

Title: The type 1 human immunodeficiency virus Tat binding protein is a transcriptional activator belonging to an additional family of evolutionarily conserved genes.

PubMed ID: 8419915

DOI: 10.1073/pnas.90.1.138

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 2194290

Title: A cDNA for a protein that interacts with the human immunodeficiency virus Tat transactivator.

PubMed ID: 2194290

DOI: 10.1126/science.2194290

PubMed ID: 8621709

Title: Identification, purification, and characterization of a PA700-dependent activator of the proteasome.

PubMed ID: 8621709

DOI: 10.1074/jbc.271.6.3112

PubMed ID: 1317798

Title: Demonstration that a human 26S proteolytic complex consists of a proteasome and multiple associated protein components and hydrolyzes ATP and ubiquitin-ligated proteins by closely linked mechanisms.

PubMed ID: 1317798

DOI: 10.1111/j.1432-1033.1992.tb16961.x

PubMed ID: 15831487

Title: Proteasomal ATPase-associated factor 1 negatively regulates proteasome activity by interacting with proteasomal ATPases.

PubMed ID: 15831487

DOI: 10.1128/mcb.25.9.3842-3853.2005

PubMed ID: 17323924

Title: Mass spectrometric characterization of the affinity-purified human 26S proteasome complex.

PubMed ID: 17323924

DOI: 10.1021/bi061994u

PubMed ID: 17709345

Title: Ubc9 fusion-directed SUMOylation identifies constitutive and inducible SUMOylation.

PubMed ID: 17709345

DOI: 10.1093/nar/gkm617

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 27428775

Title: An atomic structure of the human 26S proteasome.

PubMed ID: 27428775

DOI: 10.1038/nsmb.3273

PubMed ID: 27342858

Title: Structure of the human 26S proteasome at a resolution of 3.9 Aa.

PubMed ID: 27342858

DOI: 10.1073/pnas.1608050113

PubMed ID: 32500975

Title: Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress.

PubMed ID: 32500975

DOI: 10.15252/emmm.201911861

Sequence Information:

  • Length: 439
  • Mass: 49204
  • Checksum: 0E443465DDDEBB0B
  • Sequence:
  • MNLLPNIESP VTRQEKMATV WDEAEQDGIG EEVLKMSTEE IIQRTRLLDS EIKIMKSEVL 
    RVTHELQAMK DKIKENSEKI KVNKTLPYLV SNVIELLDVD PNDQEEDGAN IDLDSQRKGK 
    CAVIKTSTRQ TYFLPVIGLV DAEKLKPGDL VGVNKDSYLI LETLPTEYDS RVKAMEVDER 
    PTEQYSDIGG LDKQIQELVE AIVLPMNHKE KFENLGIQPP KGVLMYGPPG TGKTLLARAC 
    AAQTKATFLK LAGPQLVQMF IGDGAKLVRD AFALAKEKAP SIIFIDELDA IGTKRFDSEK 
    AGDREVQRTM LELLNQLDGF QPNTQVKVIA ATNRVDILDP ALLRSGRLDR KIEFPMPNEE 
    ARARIMQIHS RKMNVSPDVN YEELARCTDD FNGAQCKAVC VEAGMIALRR GATELTHEDY 
    MEGILEVQAK KKANLQYYA

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.