Details for: PSMD13

Gene ID: 5719

Symbol: PSMD13

Ensembl ID: ENSG00000185627

Description: proteasome 26S subunit, non-ATPase 13

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 269.0536
    Cell Significance Index: -41.8500
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 152.5567
    Cell Significance Index: -38.7000
  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 125.0402
    Cell Significance Index: -51.5100
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 107.6203
    Cell Significance Index: -50.8100
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 103.5305
    Cell Significance Index: -42.0600
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 96.3869
    Cell Significance Index: -49.5800
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 75.6905
    Cell Significance Index: -50.7900
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 44.9545
    Cell Significance Index: -42.9200
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 38.6226
    Cell Significance Index: -47.6200
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 12.5341
    Cell Significance Index: -49.4600
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 12.4755
    Cell Significance Index: -33.4200
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 10.6985
    Cell Significance Index: -32.8600
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 1.3217
    Cell Significance Index: 85.2700
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 1.2467
    Cell Significance Index: 17.0100
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 1.1940
    Cell Significance Index: 56.1200
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 1.0936
    Cell Significance Index: 29.2000
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 1.0775
    Cell Significance Index: 31.6500
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 1.0280
    Cell Significance Index: 561.4300
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 1.0206
    Cell Significance Index: 53.1600
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 1.0095
    Cell Significance Index: 138.6300
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 0.9221
    Cell Significance Index: 19.3000
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 0.8441
    Cell Significance Index: 62.9100
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.8376
    Cell Significance Index: 150.9900
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.8032
    Cell Significance Index: 98.7700
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.8007
    Cell Significance Index: 94.4300
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.7925
    Cell Significance Index: 350.4000
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 0.7635
    Cell Significance Index: 35.6000
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.7532
    Cell Significance Index: 122.5000
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.7078
    Cell Significance Index: 141.9900
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.5736
    Cell Significance Index: 40.5700
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.5679
    Cell Significance Index: 19.7400
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.4731
    Cell Significance Index: 93.9000
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.4725
    Cell Significance Index: 60.5700
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.3809
    Cell Significance Index: 20.0000
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.3744
    Cell Significance Index: 19.4500
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.3494
    Cell Significance Index: 45.1400
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.3430
    Cell Significance Index: 237.2300
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.2731
    Cell Significance Index: 51.9700
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.2667
    Cell Significance Index: 16.8100
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.2639
    Cell Significance Index: 94.6400
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.2503
    Cell Significance Index: 24.7600
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.2148
    Cell Significance Index: 2.4400
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 0.2113
    Cell Significance Index: 5.5500
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.2103
    Cell Significance Index: 9.5300
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.2036
    Cell Significance Index: 34.7600
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 0.1428
    Cell Significance Index: 1.3200
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 0.1058
    Cell Significance Index: 1.1500
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.0334
    Cell Significance Index: 0.9100
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.0277
    Cell Significance Index: 0.6000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0072
    Cell Significance Index: 5.4500
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0009
    Cell Significance Index: 1.6500
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0025
    Cell Significance Index: -4.6000
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0066
    Cell Significance Index: -10.1400
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0084
    Cell Significance Index: -6.2100
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0123
    Cell Significance Index: -9.0200
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0179
    Cell Significance Index: -11.1800
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.0204
    Cell Significance Index: -0.5700
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0205
    Cell Significance Index: -27.9100
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.0284
    Cell Significance Index: -0.4800
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0314
    Cell Significance Index: -19.9600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0410
    Cell Significance Index: -4.1900
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0646
    Cell Significance Index: -36.4200
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0730
    Cell Significance Index: -33.1200
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.1189
    Cell Significance Index: -25.0400
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -0.1231
    Cell Significance Index: -3.5300
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1315
    Cell Significance Index: -15.0700
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.1353
    Cell Significance Index: -2.5000
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.1359
    Cell Significance Index: -19.7500
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.1391
    Cell Significance Index: -40.0200
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.1487
    Cell Significance Index: -17.3300
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.1826
    Cell Significance Index: -4.8900
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.2123
    Cell Significance Index: -16.3000
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.2260
    Cell Significance Index: -13.8900
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.2262
    Cell Significance Index: -7.9500
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.2446
    Cell Significance Index: -6.2500
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.2845
    Cell Significance Index: -6.0600
  • Cell Name: peg cell (CL4033014)
    Fold Change: -0.2852
    Cell Significance Index: -6.5900
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.2906
    Cell Significance Index: -7.4700
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.3258
    Cell Significance Index: -18.2800
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.3497
    Cell Significance Index: -39.9200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.3913
    Cell Significance Index: -26.3100
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.3943
    Cell Significance Index: -12.6300
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.4619
    Cell Significance Index: -48.0900
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.4769
    Cell Significance Index: -11.9200
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.4838
    Cell Significance Index: -38.3200
  • Cell Name: kidney cell (CL1000497)
    Fold Change: -0.4947
    Cell Significance Index: -3.9500
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: -0.4980
    Cell Significance Index: -13.3500
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -0.5239
    Cell Significance Index: -7.8500
  • Cell Name: endothelial cell of placenta (CL0009092)
    Fold Change: -0.5694
    Cell Significance Index: -3.4400
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.6367
    Cell Significance Index: -7.5900
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.6756
    Cell Significance Index: -41.4200
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: -0.6921
    Cell Significance Index: -12.2300
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.6999
    Cell Significance Index: -30.9600
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.8089
    Cell Significance Index: -30.6300
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.8986
    Cell Significance Index: -15.4000
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.9839
    Cell Significance Index: -28.9800
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: -1.0278
    Cell Significance Index: -29.3300
  • Cell Name: type I muscle cell (CL0002211)
    Fold Change: -1.0287
    Cell Significance Index: -25.1000
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -1.0696
    Cell Significance Index: -35.0200
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -1.0766
    Cell Significance Index: -34.2900

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** PSMD13 is a non-ATPase subunit of the 26S proteasome, which is a large protein complex responsible for degrading ubiquitinated proteins. The 26S proteasome complex is composed of two subunits: the 19S regulatory subunit and the 20S catalytic subunit. PSMD13 is a regulatory subunit that interacts with the 20S catalytic subunit to regulate protein degradation. The gene is highly conserved across species, suggesting its essential role in cellular processes. **Pathways and Functions** PSMD13 is involved in various signaling pathways, including: 1. **Abc-family proteins mediated transport**: PSMD13 regulates the transport of proteins across cellular membranes, influencing cell signaling and homeostasis. 2. **Adaptive immune system**: PSMD13 is involved in the regulation of immune responses, including the degradation of antigen-presenting molecules and the presentation of antigens to T cells. 3. **Antigen processing-cross presentation**: PSMD13 plays a crucial role in the processing and presentation of antigens to T cells, influencing immune system regulation. 4. **Apc/c-mediated degradation of cell cycle proteins**: PSMD13 regulates the degradation of cell cycle proteins, influencing cell cycle progression and apoptosis. 5. **Apoptosis**: PSMD13 is involved in the regulation of apoptosis, influencing cellular homeostasis and disease. **Clinical Significance** PSMD13 is significantly expressed in various tissues, including myeloid leukocytes, placental villous trophoblasts, and blood cells. The gene's involvement in immune system regulation and disease suggests its potential as a therapeutic target for various conditions, including: 1. **Autoimmune diseases**: PSMD13's role in antigen processing and presentation makes it a potential target for autoimmune diseases, such as multiple sclerosis and rheumatoid arthritis. 2. **Cancer**: PSMD13's involvement in cell cycle regulation and apoptosis suggests its potential as a therapeutic target for cancer treatment. 3. **Immune system disorders**: PSMD13's role in immune system regulation makes it a potential target for immune system disorders, such as immunodeficiency diseases. In conclusion, PSMD13 is a crucial component of the 26S proteasome complex, involved in various signaling pathways that regulate cellular homeostasis and disease. Its significant expression in various tissues and potential as a therapeutic target make it an important area of research for understanding immune system regulation and developing novel treatments for various diseases.

Genular Protein ID: 2570671359

Symbol: PSD13_HUMAN

Name: 26S proteasome non-ATPase regulatory subunit 13

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 9714768

Title: cDNA cloning and functional analysis of p28 (Nas6p) and p40.5 (Nas7p), two novel regulatory subunits of the 26S proteasome.

PubMed ID: 9714768

DOI: 10.1016/s0378-1119(98)00309-6

PubMed ID: 10225435

Title: Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome.

PubMed ID: 10225435

DOI: 10.1016/s0014-5793(99)00403-2

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16554811

Title: Human chromosome 11 DNA sequence and analysis including novel gene identification.

PubMed ID: 16554811

DOI: 10.1038/nature04632

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 1317798

Title: Demonstration that a human 26S proteolytic complex consists of a proteasome and multiple associated protein components and hydrolyzes ATP and ubiquitin-ligated proteins by closely linked mechanisms.

PubMed ID: 1317798

DOI: 10.1111/j.1432-1033.1992.tb16961.x

PubMed ID: 14654843

Title: Proteomic characterization of the human centrosome by protein correlation profiling.

PubMed ID: 14654843

DOI: 10.1038/nature02166

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 27428775

Title: An atomic structure of the human 26S proteasome.

PubMed ID: 27428775

DOI: 10.1038/nsmb.3273

PubMed ID: 27342858

Title: Structure of the human 26S proteasome at a resolution of 3.9 Aa.

PubMed ID: 27342858

DOI: 10.1073/pnas.1608050113

PubMed ID: 17323924

Title: Mass spectrometric characterization of the affinity-purified human 26S proteasome complex.

PubMed ID: 17323924

DOI: 10.1021/bi061994u

Sequence Information:

  • Length: 376
  • Mass: 42945
  • Checksum: E96C99A49CAC5ED3
  • Sequence:
  • MKDVPGFLQQ SQNSGPGQPA VWHRLEELYT KKLWHQLTLQ VLDFVQDPCF AQGDGLIKLY 
    ENFISEFEHR VNPLSLVEII LHVVRQMTDP NVALTFLEKT REKVKSSDEA VILCKTAIGA 
    LKLNIGDLQV TKETIEDVEE MLNNLPGVTS VHSRFYDLSS KYYQTIGNHA SYYKDALRFL 
    GCVDIKDLPV SEQQERAFTL GLAGLLGEGV FNFGELLMHP VLESLRNTDR QWLIDTLYAF 
    NSGNVERFQT LKTAWGQQPD LAANEAQLLR KIQLLCLMEM TFTRPANHRQ LTFEEIAKSA 
    KITVNEVELL VMKALSVGLV KGSIDEVDKR VHMTWVQPRV LDLQQIKGMK DRLEFWCTDV 
    KSMEMLVEHQ AHDILT

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.