Details for: RPS17

Gene ID: 6218

Symbol: RPS17

Ensembl ID: ENSG00000182774

Description: ribosomal protein S17

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 312.2970
    Cell Significance Index: -128.6500
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 265.6725
    Cell Significance Index: -125.4300
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 252.4470
    Cell Significance Index: -129.8600
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 188.8909
    Cell Significance Index: -126.7500
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 46.3070
    Cell Significance Index: -124.0500
  • Cell Name: theca cell (CL0000503)
    Fold Change: 35.0773
    Cell Significance Index: 206.0800
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 24.0011
    Cell Significance Index: 613.1500
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 21.8856
    Cell Significance Index: 174.7400
  • Cell Name: oral mucosa squamous cell (CL1001576)
    Fold Change: 21.6630
    Cell Significance Index: 186.1500
  • Cell Name: prostate gland microvascular endothelial cell (CL2000059)
    Fold Change: 20.8963
    Cell Significance Index: 150.0800
  • Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
    Fold Change: 15.9798
    Cell Significance Index: 398.4900
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: 15.9201
    Cell Significance Index: 1626.2400
  • Cell Name: thymocyte (CL0000893)
    Fold Change: 13.4101
    Cell Significance Index: 169.4400
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 12.8764
    Cell Significance Index: 447.4500
  • Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
    Fold Change: 10.5034
    Cell Significance Index: 64.6400
  • Cell Name: peg cell (CL4033014)
    Fold Change: 10.0189
    Cell Significance Index: 231.4700
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: 9.2998
    Cell Significance Index: 164.3400
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 9.2435
    Cell Significance Index: 105.0100
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 8.2906
    Cell Significance Index: 90.1300
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 7.6526
    Cell Significance Index: 70.4700
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 7.3430
    Cell Significance Index: 153.7000
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 7.2976
    Cell Significance Index: 1315.5300
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 7.1786
    Cell Significance Index: 882.6800
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 7.0924
    Cell Significance Index: 909.2000
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 6.5566
    Cell Significance Index: 847.0700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 6.4386
    Cell Significance Index: 884.2000
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 6.0508
    Cell Significance Index: 450.9600
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 5.6121
    Cell Significance Index: 3064.8900
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 4.2922
    Cell Significance Index: 3248.8700
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 4.1158
    Cell Significance Index: 193.4400
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 4.0360
    Cell Significance Index: 188.1800
  • Cell Name: ventricular cardiac muscle cell (CL2000046)
    Fold Change: 3.9423
    Cell Significance Index: 17.4500
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 3.5775
    Cell Significance Index: 187.8300
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 3.4336
    Cell Significance Index: 90.2900
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 2.9592
    Cell Significance Index: 209.2900
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 2.8449
    Cell Significance Index: 81.5500
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 2.4666
    Cell Significance Index: 1090.5600
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 2.1314
    Cell Significance Index: 251.3600
  • Cell Name: perivascular cell (CL4033054)
    Fold Change: 1.8907
    Cell Significance Index: 8.7300
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 1.7840
    Cell Significance Index: 51.4000
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 1.4269
    Cell Significance Index: 38.8400
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 1.3457
    Cell Significance Index: 256.1000
  • Cell Name: endocardial cell (CL0002350)
    Fold Change: 1.2076
    Cell Significance Index: 7.1300
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 1.1376
    Cell Significance Index: 63.8400
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.9798
    Cell Significance Index: 884.7000
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.9283
    Cell Significance Index: 100.9700
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.7357
    Cell Significance Index: 72.7800
  • Cell Name: CD4-positive, alpha-beta thymocyte (CL0000810)
    Fold Change: 0.6137
    Cell Significance Index: 10.5800
  • Cell Name: extravillous trophoblast (CL0008036)
    Fold Change: 0.5810
    Cell Significance Index: 3.6100
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.1565
    Cell Significance Index: 4.1800
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.1255
    Cell Significance Index: 8.1000
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.1060
    Cell Significance Index: 17.2400
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.0596
    Cell Significance Index: 2.7000
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.0447
    Cell Significance Index: 1.5700
  • Cell Name: CD8-positive, alpha-beta thymocyte (CL0000811)
    Fold Change: 0.0313
    Cell Significance Index: 0.2900
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.0009
    Cell Significance Index: 0.0600
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0151
    Cell Significance Index: -3.0300
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: -0.0485
    Cell Significance Index: -17.3900
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0628
    Cell Significance Index: -118.2000
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0701
    Cell Significance Index: -129.2800
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0849
    Cell Significance Index: -130.7200
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0986
    Cell Significance Index: -134.1400
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.1262
    Cell Significance Index: -92.5100
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.1374
    Cell Significance Index: -101.7500
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.1653
    Cell Significance Index: -28.2200
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.1755
    Cell Significance Index: -98.9500
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.1909
    Cell Significance Index: -121.2700
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.2209
    Cell Significance Index: -137.9200
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.2235
    Cell Significance Index: -11.2900
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -0.2523
    Cell Significance Index: -3.7800
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.2775
    Cell Significance Index: -125.9500
  • Cell Name: endothelial cell of placenta (CL0009092)
    Fold Change: -0.2855
    Cell Significance Index: -1.7300
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.3138
    Cell Significance Index: -10.0500
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: -0.3148
    Cell Significance Index: -62.4800
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.3317
    Cell Significance Index: -13.5900
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: -0.4934
    Cell Significance Index: -25.6300
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.5774
    Cell Significance Index: -66.1500
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.5979
    Cell Significance Index: -125.9300
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -0.6025
    Cell Significance Index: -8.2200
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: -0.6118
    Cell Significance Index: -38.5600
  • Cell Name: columnar/cuboidal epithelial cell (CL0000075)
    Fold Change: -0.6614
    Cell Significance Index: -2.5300
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.6877
    Cell Significance Index: -17.1900
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.8488
    Cell Significance Index: -123.3900
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: -0.9131
    Cell Significance Index: -13.7600
  • Cell Name: epithelial cell of urethra (CL1000296)
    Fold Change: -1.0357
    Cell Significance Index: -6.4100
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -1.0687
    Cell Significance Index: -23.4000
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -1.1850
    Cell Significance Index: -123.3900
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -1.3990
    Cell Significance Index: -110.8000
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -1.4326
    Cell Significance Index: -24.5500
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: -1.4354
    Cell Significance Index: -28.0200
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -1.4652
    Cell Significance Index: -89.8300
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -1.4884
    Cell Significance Index: -114.2200
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -1.5285
    Cell Significance Index: -45.0200
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -1.8406
    Cell Significance Index: -39.2000
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -1.8569
    Cell Significance Index: -34.3200
  • Cell Name: epithelial cell of lower respiratory tract (CL0002632)
    Fold Change: -1.9944
    Cell Significance Index: -22.1800
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: -2.0263
    Cell Significance Index: -43.9000
  • Cell Name: luminal epithelial cell of mammary gland (CL0002326)
    Fold Change: -2.1766
    Cell Significance Index: -28.0300
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -2.4367
    Cell Significance Index: -89.4500
  • Cell Name: enteric neuron (CL0007011)
    Fold Change: -2.4666
    Cell Significance Index: -17.8500

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** RPS17 is a highly conserved protein, present in all eukaryotic cells. It is a small ribosomal protein (sRP) that is essential for the assembly and function of the 40S subunit. RPS17 is composed of 102 amino acids and is highly expressed in various cell types, including professional antigen-presenting cells, epithelial cells, and hematopoietic stem cells. The protein is characterized by its ability to bind to mRNA and facilitate translation initiation. **Pathways and Functions** RPS17 is involved in various cellular processes, including: 1. **Translation initiation**: RPS17 plays a crucial role in the initiation of translation, binding to mRNA and facilitating the recruitment of the 40S subunit to the start codon. 2. **mRNA processing**: RPS17 is involved in the processing of mRNA, including the recognition of start codons and the recruitment of ribosomes. 3. **Cytoplasmic translation**: RPS17 is essential for the translation of proteins in the cytoplasm, where it interacts with other ribosomal proteins and translation factors. 4. **Regulation of protein synthesis**: RPS17 is involved in the regulation of protein synthesis, including the modulation of translation initiation and elongation. **Clinical Significance** RPS17 has been implicated in various diseases, including: 1. **Influenza infection**: RPS17 has been shown to be involved in the translation of influenza virus mRNA, highlighting its potential role in viral infection. 2. **SARS-CoV-2 infection**: Similar to influenza, RPS17 has been implicated in the translation of SARS-CoV-2 mRNA, suggesting its potential role in viral infection. 3. **Neurodegenerative diseases**: RPS17 has been associated with neurodegenerative diseases, such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). 4. **Cancer**: RPS17 has been implicated in cancer, where it is involved in the regulation of protein synthesis and the promotion of tumorigenesis. In conclusion, RPS17 is a critical component of the 40S small ribosomal subunit, playing a pivotal role in translation initiation, mRNA processing, and cytoplasmic translation. Its involvement in various diseases highlights its potential as a therapeutic target and underscores the importance of understanding its mechanisms of action. **Implications for Immunology** As an expert immunologist, I would like to highlight the significance of RPS17 in the context of immunology. RPS17 is involved in the translation of proteins that are essential for immune function, including cytokines and chemokines. Alterations in RPS17 expression or function could impact immune response, potentially leading to immunodeficiency or autoimmunity. Further research on RPS17 is necessary to understand its role in immune function and to explore its potential as a therapeutic target for immunological disorders. **Future Directions** Future studies should aim to: 1. **Investigate the role of RPS17 in viral infections**: Further research is needed to understand the mechanisms by which RPS17 facilitates viral translation and to explore its potential as a therapeutic target for viral infections. 2. **Elucidate the mechanisms of RPS17 regulation**: Understanding the mechanisms by which RPS17 is regulated will provide insights into its role in translation initiation and elongation. 3. **Explore the therapeutic potential of RPS17**: RPS17 has been implicated in various diseases, and further research is needed to explore its potential as a therapeutic target. In conclusion, RPS17 is a critical component of the 40S small ribosomal subunit, playing a pivotal role in translation initiation, mRNA processing, and cytoplasmic translation. Its involvement in various diseases highlights its potential as a therapeutic target and underscores the importance of understanding its mechanisms of action.

Genular Protein ID: 1985324850

Symbol: RS17_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 3529092

Title: Homologous ribosomal proteins in bacteria, yeast, and humans.

PubMed ID: 3529092

DOI: 10.1073/pnas.83.18.6907

PubMed ID: 3240863

Title: The transcriptionally active human ribosomal protein S17 gene.

PubMed ID: 3240863

DOI: 10.1016/0378-1119(88)90109-6

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16572171

Title: Analysis of the DNA sequence and duplication history of human chromosome 15.

PubMed ID: 16572171

DOI: 10.1038/nature04601

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8706699

Title: Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry.

PubMed ID: 8706699

DOI: 10.1111/j.1432-1033.1996.0144u.x

PubMed ID: 17647292

Title: Ribosomal protein S17 gene (RPS17) is mutated in Diamond-Blackfan anemia.

PubMed ID: 17647292

DOI: 10.1002/humu.20608

PubMed ID: 19061985

Title: Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.

PubMed ID: 19061985

DOI: 10.1016/j.ajhg.2008.11.004

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 19369195

Title: Large-scale proteomics analysis of the human kinome.

PubMed ID: 19369195

DOI: 10.1074/mcp.m800588-mcp200

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24524803

Title: A new system for naming ribosomal proteins.

PubMed ID: 24524803

DOI: 10.1016/j.sbi.2014.01.002

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25114211

Title: Mapping of SUMO sites and analysis of SUMOylation changes induced by external stimuli.

PubMed ID: 25114211

DOI: 10.1073/pnas.1413825111

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

DOI: 10.1038/nsmb.3366

PubMed ID: 36638793

Title: An E3 ligase network engages GCN1 to promote the degradation of translation factors on stalled ribosomes.

PubMed ID: 36638793

DOI: 10.1016/j.cell.2022.12.025

PubMed ID: 23636399

Title: Structures of the human and Drosophila 80S ribosome.

PubMed ID: 23636399

DOI: 10.1038/nature12104

PubMed ID: 34516797

Title: Nucleolar maturation of the human small subunit processome.

PubMed ID: 34516797

DOI: 10.1126/science.abj5338

Sequence Information:

  • Length: 135
  • Mass: 15550
  • Checksum: 299AD605C5401325
  • Sequence:
  • MGRVRTKTVK KAARVIIEKY YTRLGNDFHT NKRVCEEIAI IPSKKLRNKI AGYVTHLMKR 
    IQRGPVRGIS IKLQEEERER RDNYVPEVSA LDQEIIEVDP DTKEMLKLLD FGSLSNLQVT 
    QPTVGMNFKT PRGPV

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.