Details for: UBTF
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 261.5317
Cell Significance Index: -40.6800 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 173.2452
Cell Significance Index: -43.9400 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 101.9438
Cell Significance Index: -48.1300 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 92.2445
Cell Significance Index: -37.4800 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 88.1441
Cell Significance Index: -45.3400 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 71.9723
Cell Significance Index: -48.3000 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 39.8851
Cell Significance Index: -38.0800 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 38.8254
Cell Significance Index: -47.8700 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 15.7306
Cell Significance Index: -42.1400 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 12.5391
Cell Significance Index: -49.4800 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 8.7516
Cell Significance Index: -26.8800 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 8.0234
Cell Significance Index: -17.5600 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 2.0738
Cell Significance Index: 337.2800 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 1.6301
Cell Significance Index: 84.9100 - Cell Name: decidual cell (CL2000002)
Fold Change: 1.4641
Cell Significance Index: 23.4900 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.2931
Cell Significance Index: 140.6500 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 1.1712
Cell Significance Index: 15.9800 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 1.1687
Cell Significance Index: 136.2000 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.8247
Cell Significance Index: 148.6800 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.7302
Cell Significance Index: 100.2700 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.7245
Cell Significance Index: 46.7400 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.7171
Cell Significance Index: 88.1700 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.6762
Cell Significance Index: 298.9600 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.6342
Cell Significance Index: 43.8600 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.5702
Cell Significance Index: 40.3300 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.5622
Cell Significance Index: 112.7800 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.5479
Cell Significance Index: 64.6100 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.5425
Cell Significance Index: 24.5900 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.5244
Cell Significance Index: 286.3800 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.4738
Cell Significance Index: 13.6500 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.4594
Cell Significance Index: 21.4200 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.4281
Cell Significance Index: 42.3500 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.3728
Cell Significance Index: 73.9800 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.3393
Cell Significance Index: 7.3500 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.3181
Cell Significance Index: 219.9900 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.3054
Cell Significance Index: 109.5600 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.3013
Cell Significance Index: 38.6300 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.2487
Cell Significance Index: 6.7700 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: 0.1819
Cell Significance Index: 6.3200 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.1106
Cell Significance Index: 3.0900 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.0821
Cell Significance Index: 15.6200 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0763
Cell Significance Index: 4.8100 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.0473
Cell Significance Index: 0.9900 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.0461
Cell Significance Index: 41.6700 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.0353
Cell Significance Index: 1.8400 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.0305
Cell Significance Index: 1.7100 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: 0.0202
Cell Significance Index: 14.8400 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0062
Cell Significance Index: 3.9500 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0032
Cell Significance Index: 6.0100 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0212
Cell Significance Index: -39.1000 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0257
Cell Significance Index: -34.9300 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0303
Cell Significance Index: -46.6600 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.0434
Cell Significance Index: -2.6700 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0461
Cell Significance Index: -34.8700 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0672
Cell Significance Index: -3.1600 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0690
Cell Significance Index: -51.0900 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0771
Cell Significance Index: -34.9800 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0869
Cell Significance Index: -49.0300 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0938
Cell Significance Index: -58.5900 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.0957
Cell Significance Index: -2.5500 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1024
Cell Significance Index: -10.4600 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.1109
Cell Significance Index: -18.9300 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.1249
Cell Significance Index: -2.0900 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1313
Cell Significance Index: -37.7700 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: -0.1532
Cell Significance Index: -1.7400 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1856
Cell Significance Index: -21.2600 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.1898
Cell Significance Index: -24.5200 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.1979
Cell Significance Index: -10.3900 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.2243
Cell Significance Index: -32.6000 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.2597
Cell Significance Index: -19.9300 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.2789
Cell Significance Index: -9.8000 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.2831
Cell Significance Index: -59.6300 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.3248
Cell Significance Index: -21.8400 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.3302
Cell Significance Index: -24.6100 - Cell Name: peg cell (CL4033014)
Fold Change: -0.3653
Cell Significance Index: -8.4400 - Cell Name: helper T cell (CL0000912)
Fold Change: -0.3997
Cell Significance Index: -5.6800 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4027
Cell Significance Index: -31.8900 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.4711
Cell Significance Index: -49.0500 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.5077
Cell Significance Index: -12.9700 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.5223
Cell Significance Index: -13.7400 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.5461
Cell Significance Index: -33.4800 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.5643
Cell Significance Index: -14.1100 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.5983
Cell Significance Index: -16.0100 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -0.6146
Cell Significance Index: -18.0500 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.6210
Cell Significance Index: -19.8900 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.6937
Cell Significance Index: -13.5400 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.7361
Cell Significance Index: -32.5600 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.7396
Cell Significance Index: -12.6800 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: -0.8251
Cell Significance Index: -8.9700 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.8532
Cell Significance Index: -21.9300 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.8681
Cell Significance Index: -25.5700 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.9068
Cell Significance Index: -8.3500 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.9090
Cell Significance Index: -9.4100 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.9264
Cell Significance Index: -35.0800 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -1.0162
Cell Significance Index: -29.1300 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -1.0345
Cell Significance Index: -29.5200 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -1.1157
Cell Significance Index: -24.4300 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -1.1277
Cell Significance Index: -24.0200 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -1.1682
Cell Significance Index: -31.3000 - Cell Name: cone retinal bipolar cell (CL0000752)
Fold Change: -1.1806
Cell Significance Index: -9.1000
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3653447889
Symbol: UBF1_HUMAN
Name: Nucleolar transcription factor 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 2330041
Title: Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.
PubMed ID: 2330041
DOI: 10.1038/344830a0
PubMed ID: 1940801
Title: Human autoantibody to RNA polymerase I transcription factor hUBF. Molecular identity of nucleolus organizer region autoantigen NOR-90 and ribosomal RNA transcription upstream binding factor.
PubMed ID: 1940801
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7982918
Title: The RNA polymerase I transcription factor, upstream binding factor, interacts directly with the TATA box-binding protein.
PubMed ID: 7982918
PubMed ID: 7491500
Title: Coactivator and promoter-selective properties of RNA polymerase I TAFs.
PubMed ID: 7491500
PubMed ID: 11250903
Title: hRRN3 is essential in the SL1-mediated recruitment of RNA polymerase I to rRNA gene promoters.
PubMed ID: 11250903
PubMed ID: 11283244
Title: A step subsequent to preinitiation complex assembly at the ribosomal RNA gene promoter is rate limiting for human RNA polymerase I-dependent transcription.
PubMed ID: 11283244
PubMed ID: 16858408
Title: UBF activates RNA polymerase I transcription by stimulating promoter escape.
PubMed ID: 16858408
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 20075868
Title: Nucleolar retention of a translational C/EBPalpha isoform stimulates rDNA transcription and cell size.
PubMed ID: 20075868
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 21930779
Title: Identification of DHX33 as a mediator of rRNA synthesis and cell growth.
PubMed ID: 21930779
DOI: 10.1128/mcb.05832-11
PubMed ID: 21406692
Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
PubMed ID: 21406692
PubMed ID: 22814378
Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
PubMed ID: 22814378
PubMed ID: 23972994
Title: ABH2 couples regulation of ribosomal DNA transcription with DNA alkylation repair.
PubMed ID: 23972994
PubMed ID: 23229552
Title: PHF6 regulates cell cycle progression by suppressing ribosomal RNA synthesis.
PubMed ID: 23229552
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 26089203
Title: The Warsaw breakage syndrome-related protein DDX11 is required for ribosomal RNA synthesis and embryonic development.
PubMed ID: 26089203
DOI: 10.1093/hmg/ddv213
PubMed ID: 27729611
Title: PICT-1 triggers a pro-death autophagy through inhibiting rRNA transcription and AKT/mTOR/p70S6K signaling pathway.
PubMed ID: 27729611
PubMed ID: 36271492
Title: The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans.
PubMed ID: 36271492
PubMed ID: 28777933
Title: Heterozygous de novo UBTF gain-of-function variant is associated with neurodegeneration in childhood.
PubMed ID: 28777933
PubMed ID: 11969401
Title: Solution structure of the first HMG box domain in human upstream binding factor.
PubMed ID: 11969401
DOI: 10.1021/bi015977a
PubMed ID: 12590579
Title: Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor.
PubMed ID: 12590579
DOI: 10.1021/bi026372x
Sequence Information:
- Length: 764
- Mass: 89406
- Checksum: D4F0F8BB180E757D
- Sequence:
MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQATSP ASKKPAQEGG KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE KKKAKYKARE AALKAQSERK PGGEREERGK LPESPKRAEE IWQQSVIGDY LARFKNDRVK ALKAMEMTWN NMEKKEKLMW IKKAAEDQKR YERELSEMRA PPAATNSSKK MKFQGEPKKP PMNGYQKFSQ ELLSNGELNH LPLKERMVEI GSRWQRISQS QKEHYKKLAE EQQKQYKVHL DLWVKSLSPQ DRAAYKEYIS NKRKSMTKLR GPNPKSSRTT LQSKSESEED DEEDEDDEDE DEEEEDDENG DSSEDGGDSS ESSSEDESED GDENEEDDED EDDDEDDDED EDNESEGSSS SSSSSGDSSD SDSN
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.