Details for: CPSF1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 93.1883
Cell Significance Index: -14.5000 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 58.6256
Cell Significance Index: -14.8700 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 40.4768
Cell Significance Index: -19.1100 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 28.4640
Cell Significance Index: -19.1000 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 13.4717
Cell Significance Index: -16.6100 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 6.6185
Cell Significance Index: -17.7300 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 4.3360
Cell Significance Index: -17.1100 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 2.9197
Cell Significance Index: -6.3900 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 1.9674
Cell Significance Index: 319.9800 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 1.5962
Cell Significance Index: 45.9900 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.2577
Cell Significance Index: 136.8000 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 1.2386
Cell Significance Index: 74.3600 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.7027
Cell Significance Index: 31.8500 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.6587
Cell Significance Index: 45.5600 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.5770
Cell Significance Index: 114.5000 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.5391
Cell Significance Index: 11.6800 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.4151
Cell Significance Index: 83.2700 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.4029
Cell Significance Index: 11.2600 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.3705
Cell Significance Index: 334.5000 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.2993
Cell Significance Index: 15.5500 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.2857
Cell Significance Index: 33.6900 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.2684
Cell Significance Index: 6.7100 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.2675
Cell Significance Index: 17.2600 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.2662
Cell Significance Index: 12.4100 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.2212
Cell Significance Index: 4.7100 - Cell Name: Sertoli cell (CL0000216)
Fold Change: 0.1989
Cell Significance Index: 2.7900 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.1756
Cell Significance Index: 33.4100 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.1755
Cell Significance Index: 62.9500 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.1721
Cell Significance Index: 93.9700 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.1454
Cell Significance Index: 26.2100 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.1429
Cell Significance Index: 24.4000 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1349
Cell Significance Index: 13.3400 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.1315
Cell Significance Index: 90.9300 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.1199
Cell Significance Index: 2.5100 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.1188
Cell Significance Index: 16.3200 - Cell Name: interstitial cell of ovary (CL0002094)
Fold Change: 0.1156
Cell Significance Index: 1.4800 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1074
Cell Significance Index: 47.5000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.0972
Cell Significance Index: 11.9600 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.0911
Cell Significance Index: 4.6000 - Cell Name: granulosa cell (CL0000501)
Fold Change: 0.0764
Cell Significance Index: 2.0100 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: 0.0717
Cell Significance Index: 1.2000 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0644
Cell Significance Index: 4.0600 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0620
Cell Significance Index: 2.1800 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.0295
Cell Significance Index: 3.8200 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.0230
Cell Significance Index: 2.9500 - Cell Name: peg cell (CL4033014)
Fold Change: 0.0175
Cell Significance Index: 0.4000 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 0.0119
Cell Significance Index: 0.3800 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 0.0090
Cell Significance Index: 0.4200 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.0047
Cell Significance Index: 0.3300 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0021
Cell Significance Index: 3.9400 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0024
Cell Significance Index: -4.4900 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0031
Cell Significance Index: -4.8100 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.0072
Cell Significance Index: -0.0800 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0073
Cell Significance Index: -9.8700 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0094
Cell Significance Index: -7.0800 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.0144
Cell Significance Index: -0.5000 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0168
Cell Significance Index: -10.6500 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0172
Cell Significance Index: -12.6400 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0197
Cell Significance Index: -14.6100 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0263
Cell Significance Index: -14.8600 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0264
Cell Significance Index: -11.9900 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0399
Cell Significance Index: -3.0600 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0422
Cell Significance Index: -4.3100 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.0558
Cell Significance Index: -3.1300 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0610
Cell Significance Index: -6.9900 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.0618
Cell Significance Index: -1.6500 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.0661
Cell Significance Index: -1.8000 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0726
Cell Significance Index: -10.5500 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.0750
Cell Significance Index: -5.5900 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.0766
Cell Significance Index: -3.3900 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0878
Cell Significance Index: -18.4900 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.1022
Cell Significance Index: -2.6100 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.1027
Cell Significance Index: -11.9700 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.1394
Cell Significance Index: -5.2800 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.1423
Cell Significance Index: -7.4700 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.1551
Cell Significance Index: -9.5100 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.1587
Cell Significance Index: -16.5200 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.1632
Cell Significance Index: -2.4600 - Cell Name: glutamatergic neuron (CL0000679)
Fold Change: -0.1845
Cell Significance Index: -2.0100 - Cell Name: epithelial cell of nephron (CL1000449)
Fold Change: -0.1859
Cell Significance Index: -1.5800 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: -0.2014
Cell Significance Index: -2.1900 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.2081
Cell Significance Index: -16.4800 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.2235
Cell Significance Index: -3.8300 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -0.2244
Cell Significance Index: -6.5900 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.2339
Cell Significance Index: -6.8900 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.2611
Cell Significance Index: -7.4900 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.2800
Cell Significance Index: -3.8200 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.2873
Cell Significance Index: -11.7700 - Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
Fold Change: -0.2943
Cell Significance Index: -4.2200 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.3089
Cell Significance Index: -10.8200 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.3182
Cell Significance Index: -8.1800 - Cell Name: medium spiny neuron (CL1001474)
Fold Change: -0.3275
Cell Significance Index: -4.4200 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.3339
Cell Significance Index: -10.6400 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.3565
Cell Significance Index: -4.2500 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.3574
Cell Significance Index: -11.7000 - Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
Fold Change: -0.3828
Cell Significance Index: -7.9900 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -0.3871
Cell Significance Index: -14.2100 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: -0.3924
Cell Significance Index: -6.7900 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: -0.3979
Cell Significance Index: -7.3600 - Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
Fold Change: -0.3985
Cell Significance Index: -8.6100
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 790866729
Symbol: CPSF1_HUMAN
Name: Cleavage and polyadenylation specificity factor subunit 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7590244
Title: The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation.
PubMed ID: 7590244
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 11739730
Title: SRm160 splicing coactivator promotes transcript 3'-end cleavage.
PubMed ID: 11739730
PubMed ID: 14749727
Title: Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase.
PubMed ID: 14749727
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 19690332
Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
PubMed ID: 19690332
PubMed ID: 21102410
Title: The poly A polymerase Star-PAP controls 3'-end cleavage by promoting CPSF interaction and specificity toward the pre-mRNA.
PubMed ID: 21102410
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 25944712
Title: N-terminome analysis of the human mitochondrial proteome.
PubMed ID: 25944712
PubMed ID: 30689892
Title: CPSF1 mutations are associated with early-onset high myopia and involved in retinal ganglion cell axon projection.
PubMed ID: 30689892
DOI: 10.1093/hmg/ddz029
Sequence Information:
- Length: 1443
- Mass: 160884
- Checksum: 7E1DF4D8A93487A4
- Sequence:
MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDAEAL TKNDRSTEGK AHREKLELAA SFSFFGNVMS MASVQLAGAK RDALLLSFKD AKLSVVEYDP GTHDLKTLSL HYFEEPELRD GFVQNVHTPR VRVDPDGRCA AMLVYGTRLV VLPFRRESLA EEHEGLVGEG QRSSFLPSYI IDVRALDEKL LNIIDLQFLH GYYEPTLLIL FEPNQTWPGR VAVRQDTCSI VAISLNITQK VHPVIWSLTS LPFDCTQALA VPKPIGGVVV FAVNSLLYLN QSVPPYGVAL NSLTTGTTAF PLRTQEGVRI TLDCAQATFI SYDKMVISLK GGEIYVLTLI TDGMRSVRAF HFDKAAASVL TTSMVTMEPG YLFLGSRLGN SLLLKYTEKL QEPPASAVRE AADKEEPPSK KKRVDATAGW SAAGKSVPQD EVDEIEVYGS EAQSGTQLAT YSFEVCDSIL NIGPCANAAV GEPAFLSEEF QNSPEPDLEI VVCSGHGKNG ALSVLQKSIR PQVVTTFELP GCYDMWTVIA PVRKEEEDNP KGEGTEQEPS TTPEADDDGR RHGFLILSRE DSTMILQTGQ EIMELDTSGF ATQGPTVFAG NIGDNRYIVQ VSPLGIRLLE GVNQLHFIPV DLGAPIVQCA VADPYVVIMS AEGHVTMFLL KSDSYGGRHH RLALHKPPLH HQSKVITLCL YRDLSGMFTT ESRLGGARDE LGGRSGPEAE GLGSETSPTV DDEEEMLYGD SGSLFSPSKE EARRSSQPPA DRDPAPFRAE PTHWCLLVRE NGTMEIYQLP DWRLVFLVKN FPVGQRVLVD SSFGQPTTQG EARREEATRQ GELPLVKEVL LVALGSRQSR PYLLVHVDQE LLIYEAFPHD SQLGQGNLKV RFKKVPHNIN FREKKPKPSK KKAEGGGAEE GAGARGRVAR FRYFEDIYGY SGVFICGPSP HWLLVTGRGA LRLHPMAIDG PVDSFAPFHN VNCPRGFLYF NRQGELRISV LPAYLSYDAP WPVRKIPLRC TAHYVAYHVE SKVYAVATST NTPCARIPRM TGEEKEFETI ERDERYIHPQ QEAFSIQLIS PVSWEAIPNA RIELQEWEHV TCMKTVSLRS EETVSGLKGY VAAGTCLMQG EEVTCRGRIL IMDVIEVVPE PGQPLTKNKF KVLYEKEQKG PVTALCHCNG HLVSAIGQKI FLWSLRASEL TGMAFIDTQL YIHQMISVKN FILAADVMKS ISLLRYQEES KTLSLVSRDA KPLEVYSVDF MVDNAQLGFL VSDRDRNLMV YMYLPEAKES FGGMRLLRRA DFHVGAHVNT FWRTPCRGAT EGLSKKSVVW ENKHITWFAT LDGGIGLLLP MQEKTYRRLL MLQNALTTML PHHAGLNPRA FRMLHVDRRT LQNAVRNVLD GELLNRYLYL STMERSELAK KIGTTPDIIL DDLLETDRVT AHF
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.