Details for: SEMA3F

Gene ID: 6405

Symbol: SEMA3F

Ensembl ID: ENSG00000001617

Description: semaphorin 3F

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 30.4610
    Cell Significance Index: -12.3800
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 12.9668
    Cell Significance Index: -12.3800
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 5.8108
    Cell Significance Index: 79.2800
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 3.3218
    Cell Significance Index: -7.2700
  • Cell Name: epidermal cell (CL0000362)
    Fold Change: 1.9605
    Cell Significance Index: 4.4200
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 1.6746
    Cell Significance Index: 86.9900
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 1.5720
    Cell Significance Index: 299.1700
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 1.4102
    Cell Significance Index: 39.4100
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 1.0996
    Cell Significance Index: 198.2300
  • Cell Name: photoreceptor cell (CL0000210)
    Fold Change: 1.0392
    Cell Significance Index: 14.6000
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 1.0345
    Cell Significance Index: 53.8900
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 1.0200
    Cell Significance Index: 118.8700
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.9439
    Cell Significance Index: 116.0600
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.9217
    Cell Significance Index: 149.9100
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.8857
    Cell Significance Index: 799.7600
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.5819
    Cell Significance Index: 63.3000
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.5674
    Cell Significance Index: 35.7600
  • Cell Name: cardiac endothelial cell (CL0010008)
    Fold Change: 0.4158
    Cell Significance Index: 5.9800
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: 0.4156
    Cell Significance Index: 9.1000
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.4099
    Cell Significance Index: 24.6100
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.3783
    Cell Significance Index: 10.9000
  • Cell Name: cone retinal bipolar cell (CL0000752)
    Fold Change: 0.3587
    Cell Significance Index: 2.7700
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.3078
    Cell Significance Index: 21.2900
  • Cell Name: peg cell (CL4033014)
    Fold Change: 0.2697
    Cell Significance Index: 6.2300
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: 0.2230
    Cell Significance Index: 3.3600
  • Cell Name: corneal epithelial cell (CL0000575)
    Fold Change: 0.2157
    Cell Significance Index: 3.0700
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.1840
    Cell Significance Index: 100.4800
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.1763
    Cell Significance Index: 34.9900
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: 0.1736
    Cell Significance Index: 4.3400
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.1695
    Cell Significance Index: 5.9600
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.1406
    Cell Significance Index: 62.1800
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.1370
    Cell Significance Index: 6.2100
  • Cell Name: fallopian tube secretory epithelial cell (CL4030006)
    Fold Change: 0.1357
    Cell Significance Index: 2.1000
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.1259
    Cell Significance Index: 45.1500
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.1168
    Cell Significance Index: 8.2600
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.1034
    Cell Significance Index: 1.1800
  • Cell Name: epithelial cell of prostate (CL0002231)
    Fold Change: 0.0891
    Cell Significance Index: 0.5500
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.0873
    Cell Significance Index: 8.6400
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.0784
    Cell Significance Index: 1.6700
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.0689
    Cell Significance Index: 106.0400
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0431
    Cell Significance Index: 81.1000
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.0378
    Cell Significance Index: 26.1100
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: 0.0197
    Cell Significance Index: 12.5000
  • Cell Name: epithelial cell of pancreas (CL0000083)
    Fold Change: 0.0188
    Cell Significance Index: 0.3100
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: 0.0184
    Cell Significance Index: 33.9000
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 0.0005
    Cell Significance Index: 0.0000
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0008
    Cell Significance Index: -0.1600
  • Cell Name: endothelial cell of placenta (CL0009092)
    Fold Change: -0.0033
    Cell Significance Index: -0.0200
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: -0.0034
    Cell Significance Index: -0.0900
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.0067
    Cell Significance Index: -0.1400
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0104
    Cell Significance Index: -14.1100
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0142
    Cell Significance Index: -2.0600
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0147
    Cell Significance Index: -10.9300
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0154
    Cell Significance Index: -11.2800
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0178
    Cell Significance Index: -13.4800
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0195
    Cell Significance Index: -5.6100
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0211
    Cell Significance Index: -13.1500
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0242
    Cell Significance Index: -13.6400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.0290
    Cell Significance Index: -1.6300
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0307
    Cell Significance Index: -13.9400
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.0353
    Cell Significance Index: -0.9600
  • Cell Name: odontoblast (CL0000060)
    Fold Change: -0.0477
    Cell Significance Index: -6.1100
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0622
    Cell Significance Index: -13.1000
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0645
    Cell Significance Index: -11.0100
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0695
    Cell Significance Index: -7.1000
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.0763
    Cell Significance Index: -0.9100
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0789
    Cell Significance Index: -10.8300
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: -0.0812
    Cell Significance Index: -1.7600
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0871
    Cell Significance Index: -5.3400
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0965
    Cell Significance Index: -11.0500
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.0983
    Cell Significance Index: -3.1500
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.1027
    Cell Significance Index: -4.7900
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.1030
    Cell Significance Index: -13.3100
  • Cell Name: basal epithelial cell of prostatic duct (CL0002236)
    Fold Change: -0.1307
    Cell Significance Index: -1.1600
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.1326
    Cell Significance Index: -13.8100
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.1640
    Cell Significance Index: -12.2200
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.1684
    Cell Significance Index: -13.3400
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.1772
    Cell Significance Index: -13.6000
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.1795
    Cell Significance Index: -11.0300
  • Cell Name: taste receptor cell (CL0000209)
    Fold Change: -0.1845
    Cell Significance Index: -2.1500
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.1930
    Cell Significance Index: -3.2300
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.1982
    Cell Significance Index: -13.3300
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: -0.2027
    Cell Significance Index: -13.0800
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: -0.2102
    Cell Significance Index: -4.4000
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.2132
    Cell Significance Index: -10.0200
  • Cell Name: cortical thymic epithelial cell (CL0002364)
    Fold Change: -0.2176
    Cell Significance Index: -1.8000
  • Cell Name: retinal bipolar neuron (CL0000748)
    Fold Change: -0.2236
    Cell Significance Index: -2.7100
  • Cell Name: epithelial cell of nephron (CL1000449)
    Fold Change: -0.2400
    Cell Significance Index: -2.0400
  • Cell Name: endothelial stalk cell (CL0002671)
    Fold Change: -0.2481
    Cell Significance Index: -2.7800
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.2546
    Cell Significance Index: -11.2600
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.2603
    Cell Significance Index: -6.6900
  • Cell Name: pulmonary capillary endothelial cell (CL4028001)
    Fold Change: -0.2768
    Cell Significance Index: -3.7900
  • Cell Name: foveolar cell of stomach (CL0002179)
    Fold Change: -0.2876
    Cell Significance Index: -1.8800
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: -0.2886
    Cell Significance Index: -15.1500
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.2900
    Cell Significance Index: -10.9800
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.2907
    Cell Significance Index: -14.6900
  • Cell Name: CD14-low, CD16-positive monocyte (CL0002396)
    Fold Change: -0.3001
    Cell Significance Index: -7.2700
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.3016
    Cell Significance Index: -7.7100
  • Cell Name: leptomeningeal cell (CL0000708)
    Fold Change: -0.3205
    Cell Significance Index: -6.8500
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: -0.3223
    Cell Significance Index: -4.6200

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** SEMA3F is a secreted protein that interacts with plexin receptors to regulate axon guidance and neuronal development. It is classified as a chemorepellent, meaning it repels axons to guide them away from inappropriate targets. SEMA3F is also involved in negative regulation of axon extension and negative regulation of cell migration. Its expression is tightly regulated, and its dysregulation has been implicated in various neurological and immune disorders. **Pathways and Functions** SEMA3F is involved in multiple signaling pathways, including: 1. **Semaphorin-plexin signaling pathway**: SEMA3F interacts with plexin receptors to regulate axon guidance and neuronal development. 2. **Chemorepellent activity**: SEMA3F repels axons to guide them away from inappropriate targets. 3. **Regulation of postsynaptic organization**: SEMA3F regulates the organization of postsynaptic structures in neurons. 4. **Negative regulation of axon extension**: SEMA3F inhibits axon extension to regulate axon guidance. 5. **Negative regulation of cell migration**: SEMA3F inhibits cell migration to regulate tissue development. **Clinical Significance** Dysregulation of SEMA3F has been implicated in various neurological and immune disorders, including: 1. **Autism spectrum disorder**: SEMA3F has been shown to be associated with autism spectrum disorder, a neurodevelopmental disorder characterized by impaired social interaction and communication. 2. **Neurodegenerative diseases**: SEMA3F has been implicated in neurodegenerative diseases, such as Alzheimer's disease and Parkinson's disease, which are characterized by impaired axon guidance and neuronal development. 3. **Immune disorders**: SEMA3F has been shown to play a role in immune regulation, and its dysregulation has been implicated in autoimmune disorders, such as multiple sclerosis. 4. **Cancer**: SEMA3F has been implicated in cancer development and progression, particularly in cancers of the nervous system and immune system. In conclusion, SEMA3F is a critical regulator of axon guidance, neuronal development, and immune function. Its dysregulation has been implicated in various neurological and immune disorders, highlighting the importance of this gene in maintaining normal tissue development and function. Further research is needed to fully elucidate the role of SEMA3F in human disease and to develop therapeutic strategies to target this gene in disease prevention and treatment.

Genular Protein ID: 854203885

Symbol: SEM3F_HUMAN

Name: Semaphorin-3F

UniProtKB Accession Codes:

Q13275 C9JQ85 Q13274 Q13372 Q15704 Q6GTR4

Database IDs:

AGR 1 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 BioMuta 1 CCDS 2 CDD 2 CTD 1 ChiTaRS 1 DMDM 1 DNASU 1 DisGeNET 1 EMBL 7 Ensembl 2 ExpressionAtlas 1 GO 22 Gene3D 3 GeneCards 1 GeneTree 1 GeneWiki 1 GenomeRNAi 1 GlyConnect 1 GlyCosmos 1 GlyGen 1 HGNC 1 HPA 1 InParanoid 1 IntAct 1 InterPro 10 KEGG 1 MANE-Select 1 MIM 1 MassIVE 1 NCBI Taxonomy 1 OMA 1 OpenTargets 1 OrthoDB 1 PANTHER 2 PIR 1 PRO 1 PROSITE 2 PathwayCommons 1 PaxDb 1 PeptideAtlas 1 Pfam 1 PharmGKB 1 Pharos 1 PhosphoSitePlus 1 PhylomeDB 1 Proteomes 1 ProteomicsDB 2 Pumba 1 RNAct 1 RefSeq 5 SIGNOR 1 SMART 4 SMR 1 STRING 1 SUPFAM 3 SignaLink 1 TreeFam 1 UCSC 1 VEuPathDB 1 eggNOG 1 iPTMnet 1 neXtProt 1

Citations:

PubMed ID: 8649831

Title: Distinct 3p21.3 deletions in lung cancer and identification of a new human semaphorin.

PubMed ID: 8649831

PubMed ID: 8786119

Title: Isolation of the human semaphorin III/F gene (SEMA3F) at chromosome 3p21, a region deleted in lung cancer.

PubMed ID: 8786119

DOI: 10.1006/geno.1996.0074

PubMed ID: 16641997

Title: The DNA sequence, annotation and analysis of human chromosome 3.

PubMed ID: 16641997

DOI: 10.1038/nature04728

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8633026

Title: Human semaphorins A(V) and IV reside in the 3p21.3 small cell lung cancer deletion region and demonstrate distinct expression patterns.

PubMed ID: 8633026

DOI: 10.1073/pnas.93.9.4120

Sequence Information:

  • Length: 785
  • Mass: 88381
  • Checksum: FE3FC796EEC1608E
  • Sequence:
    • MLVAGLLLWA SLLTGAWPSF PTQDHLPATP RVRLSFKELK ATGTAHFFNF LLNTTDYRIL 
LKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAASPQR IEECVLSGKD VNGECGNFVR 
LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR AQATPWTQTQ AVRGRGSRAT DGALRPMPTA 
PRQDYIFYLE PERLESGKGK CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ 
TAMRTDQYNS RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSAEAPQSP AVYARIGRIC 
LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELQ DVFVQQTQDV RNPVIYAVFT 
SSGSVFRGSA VCVYSMADIR MVFNGPFAHK EGPNYQWMPF SGKMPYPRPG TCPGGTFTPS 
MKSTKDYPDE VINFMRSHPL MYQAVYPLQR RPLVVRTGAP YRLTTIAVDQ VDAADGRYEV 
LFLGTDRGTV QKVIVLPKDD QELEELMLEE VEVFKDPAPV KTMTISSKRQ QLYVASAVGV 
THLSLHRCQA YGAACADCCL ARDPYCAWDG QACSRYTASS KRRSRRQDVR HGNPIRQCRG 
FNSNANKNAV ESVQYGVAGS AAFLECQPRS PQATVKWLFQ RDPGDRRREI RAEDRFLRTE 
QGLLLRALQL SDRGLYSCTA TENNFKHVVT RVQLHVLGRD AVHAALFPPL SMSAPPPPGA 
GPPTPPYQEL AQLLAQPEVG LIHQYCQGYW RHVPPSPREA PGAPRSPEPQ DQKKPRNRRH 
HPPDT

Genular Protein ID: 4027682705

Symbol: Q59G50_HUMAN

Name: N/A

UniProtKB Accession Codes:

Q59G50

Database IDs:

ARBA 2 AlphaFoldDB 1 BioGRID-ORCS 1 CDD 2 CTD 1 DNASU 1 DisGeNET 1 EMBL 2 GO 8 Gene3D 3 InterPro 10 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 4 PROSITE-ProRule 1 PeptideAtlas 1 Pfam 1 RefSeq 2 SAM 1 SMART 4 SUPFAM 3

Sequence Information:

  • Length: 750
  • Mass: 84961
  • Checksum: 2DA6A703B764FC98
  • Sequence:
    • ERANEPRRSG EPRAQRRTWD HLPATPRVRL SFKELKATGT AHFFNFLLNT TDYRILLKDE 
DHDRMYVGSK DYVLSLDLHD INREPLIIHW AASPQRIEEC VLSGKDVNGE CGNFVRLIQP 
WNRTHLYVCG TGAYNPMCTY VNRGRRAQDY IFYLEPERLE SGKGKCPYDP KLDTASALIN 
EELYAGVYID FMGTDAAIFR TLGKQTAMRT DQYNSRWLND PSFIHAELIP DSAERNDDKL 
YFFFRERSAE APQSPAVYAR IGRICLNDDG GHCCLVNKWS TFLKARLVCS VPGEDGIETH 
FDELQDVFVQ QTQDVRNPVI YAVFTSSGSV FRGSAVCVYS MADIRMVFNG PFAHKEGPNY 
QWMPFSGKMP YPRPGTCPGG TFTPSMKSTK DYPDEVINFM RSHPLMYQAV YPLQRRPLVV 
RTGAPYRLTT IAVDQVDAAD GRYEVLFLGT DRGTVQKVIV LPKDDQEMEE LMLEEVEVFK 
DPAPVKTMTI SSKRQQLYVA SAVGVTHLSL HRCQAYGAAC ADCCLARDPY CAWDGQACSR 
YTASSKRRSR RQDVRHGNPI RQCRGFNSNA NKNAVESVQY GVAGSAAFLE CQPRSPQATV 
KWLFQRDPGD RRREIRAEDR FLRTEQGLLL RALQLSDRGL YSCTATENNF KHVVTRVQLH 
VLGRDAVHAA LFPPLSMSAP PPPGAGPPTP PYQELAQLLA QPEVGLIHQY CQGYWRHVPP 
SPREAPGAPR SPEPQDQKKP RNRRHHPPDT

Genular Protein ID: 1155240077

Symbol: C9JPG5_HUMAN

Name: N/A

UniProtKB Accession Codes:

C9JPG5

Database IDs:

ARBA 2 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 ChiTaRS 1 DNASU 1 DisGeNET 1 EMBL 2 Ensembl 2 ExpressionAtlas 1 GO 3 Gene3D 3 GeneTree 1 HGNC 1 HOGENOM 1 InterPro 10 MassIVE 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 4 PROSITE-ProRule 1 PeptideAtlas 2 Pfam 1 Proteomes 2 ProteomicsDB 2 RefSeq 1 SAM 1 SMART 4 SMR 1 SUPFAM 3 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 16641997

Title: The DNA sequence, annotation and analysis of human chromosome 3.

PubMed ID: 16641997

DOI: 10.1038/nature04728

Sequence Information:

  • Length: 686
  • Mass: 77313
  • Checksum: 914C25054DA56BC8
  • Sequence:
    • MYVGSKDYVL SLDLHDINRE PLIIHWAASP QRIEECVLSG KDVNGECGNF VRLIQPWNRT 
HLYVCGTGAY NPMCTYVNRG RRAQDYIFYL EPERLESGKG KCPYDPKLDT ASALINEELY 
AGVYIDFMGT DAAIFRTLGK QTAMRTDQYN SRWLNDPSFI HAELIPDSAE RNDDKLYFFF 
RERSAEAPQS PAVYARIGRI CLNDDGGHCC LVNKWSTFLK ARLVCSVPGE DGIETHFDEL 
QDVFVQQTQD VRNPVIYAVF TSSGSVFRGS AVCVYSMADI RMVFNGPFAH KEGPNYQWMP 
FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRSHP LMYQAVYPLQ RRPLVVRTGA 
PYRLTTIAVD QVDAADGRYE VLFLGTDRGT VQKVIVLPKD DQELEELMLE EVEVFKDPAP 
VKTMTISSKR QQLYVASAVG VTHLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS 
SKRRSRRQDV RHGNPIRQCR GFNSNANKNA VESVQYGVAG SAAFLECQPR SPQATVKWLF 
QRDPGDRRRE IRAEDRFLRT EQGLLLRALQ LSDRGLYSCT ATENNFKHVV TRVQLHVLGR 
DAVHAALFPP LSMSAPPPPG AGPPTPPYQE LAQLLAQPEV GLIHQYCQGY WRHVPPSPRE 
APGAPRSPEP QDQKKPRNRR HHPPDT

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.