Details for: NR1H2

Gene ID: 7376

Symbol: NR1H2

Ensembl ID: ENSG00000131408

Description: nuclear receptor subfamily 1 group H member 2

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 148.2527
    Cell Significance Index: -23.0600
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 104.7534
    Cell Significance Index: -26.5700
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 69.2665
    Cell Significance Index: -28.1400
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 68.0120
    Cell Significance Index: -32.1100
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 62.9295
    Cell Significance Index: -32.3700
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 29.9871
    Cell Significance Index: -28.6300
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 24.2182
    Cell Significance Index: -29.8600
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 8.9926
    Cell Significance Index: -24.0900
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 8.3451
    Cell Significance Index: -32.9300
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 7.2995
    Cell Significance Index: -22.4200
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 4.9758
    Cell Significance Index: -10.8900
  • Cell Name: epithelial cell of pancreas (CL0000083)
    Fold Change: 4.6130
    Cell Significance Index: 76.0200
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: 3.1477
    Cell Significance Index: 26.4400
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 2.4135
    Cell Significance Index: 281.2700
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: 1.2698
    Cell Significance Index: 66.1400
  • Cell Name: vascular lymphangioblast (CL0005022)
    Fold Change: 1.2271
    Cell Significance Index: 21.6900
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 1.2072
    Cell Significance Index: 16.4700
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 1.0448
    Cell Significance Index: 103.3600
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.9078
    Cell Significance Index: 24.7100
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.7399
    Cell Significance Index: 47.7400
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 0.7361
    Cell Significance Index: 34.6000
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.6484
    Cell Significance Index: 33.6800
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.6087
    Cell Significance Index: 74.8500
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.5730
    Cell Significance Index: 74.0300
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.5723
    Cell Significance Index: 78.5900
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.5672
    Cell Significance Index: 66.8900
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: 0.5611
    Cell Significance Index: 10.3700
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.5492
    Cell Significance Index: 16.1300
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.5365
    Cell Significance Index: 96.7200
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.5022
    Cell Significance Index: 13.4100
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 0.4885
    Cell Significance Index: 36.4100
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.4835
    Cell Significance Index: 33.4400
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 0.4675
    Cell Significance Index: 13.4000
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.4575
    Cell Significance Index: 24.0200
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.4538
    Cell Significance Index: 247.8200
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.4310
    Cell Significance Index: 55.2500
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.4210
    Cell Significance Index: 9.1200
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 0.4182
    Cell Significance Index: 19.5000
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.3358
    Cell Significance Index: 148.4700
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.3102
    Cell Significance Index: 14.0600
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.2943
    Cell Significance Index: 56.0000
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: 0.2711
    Cell Significance Index: 7.2600
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: 0.2641
    Cell Significance Index: 3.0000
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.2436
    Cell Significance Index: 48.3500
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.1866
    Cell Significance Index: 37.4400
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1753
    Cell Significance Index: 5.0500
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.1589
    Cell Significance Index: 57.0000
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.1261
    Cell Significance Index: 8.9200
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.0902
    Cell Significance Index: 3.1700
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.0321
    Cell Significance Index: 49.4000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0309
    Cell Significance Index: 23.4000
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: 0.0295
    Cell Significance Index: 54.3500
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: 0.0090
    Cell Significance Index: 12.2000
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0071
    Cell Significance Index: 13.4300
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0079
    Cell Significance Index: -0.8100
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0120
    Cell Significance Index: -8.8100
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0163
    Cell Significance Index: -2.7800
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0245
    Cell Significance Index: -15.5800
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: -0.0301
    Cell Significance Index: -1.9000
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0388
    Cell Significance Index: -4.4500
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0420
    Cell Significance Index: -31.1300
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0470
    Cell Significance Index: -21.3100
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.0505
    Cell Significance Index: -1.0800
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0536
    Cell Significance Index: -30.2400
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0631
    Cell Significance Index: -39.3900
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0647
    Cell Significance Index: -18.6100
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: -0.0652
    Cell Significance Index: -0.6000
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.0770
    Cell Significance Index: -2.4700
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.0873
    Cell Significance Index: -5.3700
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.0882
    Cell Significance Index: -2.3600
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.1298
    Cell Significance Index: -9.9600
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.1300
    Cell Significance Index: -3.3200
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.1338
    Cell Significance Index: -3.7400
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.1496
    Cell Significance Index: -21.7400
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.1718
    Cell Significance Index: -36.1900
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -0.1936
    Cell Significance Index: -5.0900
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.2005
    Cell Significance Index: -4.1600
  • Cell Name: peg cell (CL4033014)
    Fold Change: -0.2134
    Cell Significance Index: -4.9300
  • Cell Name: proerythroblast (CL0000547)
    Fold Change: -0.2191
    Cell Significance Index: -3.1400
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.2241
    Cell Significance Index: -3.7500
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.2475
    Cell Significance Index: -13.8900
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -0.2823
    Cell Significance Index: -4.2300
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.2900
    Cell Significance Index: -4.9700
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.3059
    Cell Significance Index: -24.2300
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.3059
    Cell Significance Index: -31.8500
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.3296
    Cell Significance Index: -8.2400
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: -0.3376
    Cell Significance Index: -11.7300
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.3444
    Cell Significance Index: -23.1600
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.3691
    Cell Significance Index: -4.4000
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.4210
    Cell Significance Index: -21.2800
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.4316
    Cell Significance Index: -26.4600
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: -0.5468
    Cell Significance Index: -7.8300
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: -0.5480
    Cell Significance Index: -11.4700
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.5831
    Cell Significance Index: -17.1800
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.6068
    Cell Significance Index: -26.8400
  • Cell Name: skeletal muscle fibroblast (CL0011027)
    Fold Change: -0.6214
    Cell Significance Index: -4.2100
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.6557
    Cell Significance Index: -26.8700
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.6936
    Cell Significance Index: -17.8300
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.7215
    Cell Significance Index: -27.3200
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -0.7321
    Cell Significance Index: -26.8800

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** 1. **Nuclear Receptor Structure:** NR1H2 is a transcription factor that belongs to the nuclear receptor superfamily. It consists of an ligand-binding domain, a DNA-binding domain, and a transcription activation domain. 2. **Ligand-Binding:** NR1H2 binds to oxysterols, which are oxidized derivatives of cholesterol, and other ligands, such as bile acids and fatty acids. 3. **Gene Regulation:** NR1H2 regulates the expression of genes involved in lipid metabolism, including those involved in cholesterol uptake, efflux, and storage. 4. **Tissue Expression:** NR1H2 is highly expressed in the liver, kidney, and adipose tissue, and is also found in other tissues, including the pancreas, immune cells, and blood cells. **Pathways and Functions:** 1. **Cholesterol Homeostasis:** NR1H2 regulates the expression of genes involved in cholesterol uptake, efflux, and storage, ensuring that cholesterol levels are maintained within a narrow range. 2. **Lipid Metabolism:** NR1H2 regulates the expression of genes involved in lipid synthesis, storage, and breakdown, including those involved in triglyceride lipolysis and fatty acid biosynthesis. 3. **Energy Homeostasis:** NR1H2 regulates the expression of genes involved in energy metabolism, including those involved in glucose and lipid metabolism. 4. **Inflammation:** NR1H2 regulates the expression of genes involved in inflammation, including those involved in the regulation of immune responses and the production of pro-inflammatory cytokines. 5. **Cell Differentiation:** NR1H2 regulates the expression of genes involved in cell differentiation, including those involved in the development of adipocytes and hepatocytes. **Clinical Significance:** 1. **Atherosclerosis:** Aberrant expression or function of NR1H2 has been implicated in the development of atherosclerosis, a condition characterized by the buildup of cholesterol-rich plaques in the arteries. 2. **Metabolic Syndrome:** NR1H2 dysregulation has been implicated in the development of metabolic syndrome, a condition characterized by insulin resistance, hypertension, and dyslipidemia. 3. **Cancer:** NR1H2 dysregulation has been implicated in the development and progression of certain cancers, including breast, lung, and colon cancer. 4. **Neurodegenerative Diseases:** NR1H2 dysregulation has been implicated in the development and progression of neurodegenerative diseases, including Alzheimer's disease and Parkinson's disease. In conclusion, the NR1H2 gene plays a critical role in regulating cholesterol homeostasis and lipid metabolism, and its dysregulation has been implicated in various diseases. Further research is needed to fully understand the mechanisms by which NR1H2 regulates lipid metabolism and to develop therapeutic strategies to target NR1H2 for the treatment of these diseases.

Genular Protein ID: 1373822690

Symbol: NR1H2_HUMAN

Name: Oxysterols receptor LXR-beta

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 7926814

Title: NER, a new member of the gene family encoding the human steroid hormone nuclear receptor.

PubMed ID: 7926814

DOI: 10.1016/0378-1119(94)90080-9

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 20159957

Title: GPS2-dependent corepressor/SUMO pathways govern anti-inflammatory actions of LRH-1 and LXRbeta in the hepatic acute phase response.

PubMed ID: 20159957

DOI: 10.1101/gad.545110

PubMed ID: 23931754

Title: ABCA12 regulates ABCA1-dependent cholesterol efflux from macrophages and the development of atherosclerosis.

PubMed ID: 23931754

DOI: 10.1016/j.cmet.2013.07.003

PubMed ID: 25661920

Title: CCAR2 negatively regulates nuclear receptor LXRalpha by competing with SIRT1 deacetylase.

PubMed ID: 25661920

DOI: 10.1016/j.jsbmb.2015.02.001

PubMed ID: 12819202

Title: The three-dimensional structure of the liver X receptor beta reveals a flexible ligand-binding pocket that can accommodate fundamentally different ligands.

PubMed ID: 12819202

DOI: 10.1074/jbc.m304842200

Sequence Information:

  • Length: 460
  • Mass: 50974
  • Checksum: 9465A6FFB7FCFD2F
  • Sequence:
  • MSSPTTSSLD TPLPGNGPPQ PGAPSSSPTV KEEGPEPWPG GPDPDVPGTD EASSACSTDW 
    VIPDPEEEPE RKRKKGPAPK MLGHELCRVC GDKASGFHYN VLSCEGCKGF FRRSVVRGGA 
    RRYACRGGGT CQMDAFMRRK CQQCRLRKCK EAGMREQCVL SEEQIRKKKI RKQQQESQSQ 
    SQSPVGPQGS SSSASGPGAS PGGSEAGSQG SGEGEGVQLT AAQELMIQQL VAAQLQCNKR 
    SFSDQPKVTP WPLGADPQSR DARQQRFAHF TELAIISVQE IVDFAKQVPG FLQLGREDQI 
    ALLKASTIEI MLLETARRYN HETECITFLK DFTYSKDDFH RAGLQVEFIN PIFEFSRAMR 
    RLGLDDAEYA LLIAINIFSA DRPNVQEPGR VEALQQPYVE ALLSYTRIKR PQDQLRFPRM 
    LMKLVSLRTL SSVHSEQVFA LRLQDKKLPP LLSEIWDVHE

Genular Protein ID: 1613500213

Symbol: F1D8P7_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11181995

Title: The sequence of the human genome.

PubMed ID: 11181995

DOI: 10.1126/science.1058040

Sequence Information:

  • Length: 461
  • Mass: 51102
  • Checksum: 68CE3D9F9BC5C0BE
  • Sequence:
  • MSSPTTSSLD TPLPGNGPPQ PGAPSSSPTV KEEGPEPWPG GPDPDVPGTD EASSACSTDW 
    VIPDPEEEPE RKRKKGPAPK MLGHELCRVC GDKASGFHYN VLSCEGCKGF FRRSVVRGGA 
    RRYACRGGGT CQMDAFMRRK CQQCRLRKCK EAGMREQCVL SEEQIRKKKI RKQQQQESQS 
    QSQSPVGPQG SSSSASGPGA SPGGSEAGSQ GSGEGEGVQL TAAQELMIQQ LVAAQLQCNK 
    RSFSDQPKVT PWPLGADPQS RDARQQRFAH FTELAIISVQ EIVDFAKQVP GFLQLGREDQ 
    IALLKASTIE IMLLETARRY NHETECITFL KDFTYSKDDF HRAGLQVEFI NPIFEFSRAM 
    RRLGLDDAEY ALLIAINIFS ADRPNVQEPG RVEALQQPYV EALLSYTRIK RPQDQLRFPR 
    MLMKLVSLRT LSSVHSEQVF ALRLQDKKLP PLLSEIWDVH E

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.