Details for: ARID1A

Gene ID: 8289

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ARID1A

Ensembl ID: ENSG00000117713

Description: AT-rich interaction domain 1A

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 25.22
    rCSI 42.33%
    PRS 10.71
  • L6b glutamatergic cortical neuron CL4023038
    CSI 12.61
    rCSI 39.41%
    PRS 11.42
  • Kupffer cell CL0000091
    CSI 12.16
    rCSI 27.8%
    PRS 17.62
  • sncg GABAergic cortical interneuron CL4023015
    CSI 11.69
    rCSI 18.8%
    PRS 11.66
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 10.97
    rCSI 26.65%
    PRS 10.51
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 9.69
    rCSI 17.1%
    PRS 10.67
  • erythroblast CL0000765
    CSI 9.4
    rCSI 24.94%
    PRS 29.24
  • cardiac endothelial cell CL0010008
    CSI 8.72
    rCSI 35.16%
    PRS 16.36
  • glioblast CL0000030
    CSI 7.73
    rCSI 12.33%
    PRS 15.57
  • M cell of gut CL0000682
    CSI 7.04
    rCSI 7.48%
    PRS 31.45
  • renal interstitial pericyte CL1001318
    CSI 6.59
    rCSI 18.16%
    PRS 16.81
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 6.5
    rCSI 8.86%
    PRS 42.39
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 6.39
    rCSI 23%
    PRS 10.07
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 6.35
    rCSI 24.71%
    PRS 29.87
  • macroglial cell CL0000126
    CSI 6.31
    rCSI 16.22%
    PRS 23.84
  • endothelial cell of vascular tree CL0002139
    CSI 5.69
    rCSI 31.08%
    PRS 28.98
  • goblet cell CL0000160
    CSI 5.55
    rCSI 5.24%
    PRS 19.03
  • enterocyte CL0000584
    CSI 5.41
    rCSI 8.72%
    PRS 28.18
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 5.38
    rCSI 5.28%
    PRS 28.34
  • GABAergic neuron CL0000617
    CSI 5.29
    rCSI 17.71%
    PRS 12.73
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 5.2
    rCSI 30.6%
    PRS 11.25
  • epithelial cell CL0000066
    CSI 4.97
    rCSI 7.64%
    PRS 25.07
  • mononuclear phagocyte CL0000113
    CSI 4.94
    rCSI 10.87%
    PRS 20.43
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 4.72
    rCSI 17.84%
    PRS 11.03
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 4.44
    rCSI 22.28%
    PRS 24
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 4.43
    rCSI 13.87%
    PRS 12.3
  • retinal bipolar neuron CL0000748
    CSI 4.19
    rCSI 7.85%
    PRS 13.06
  • type B pancreatic cell CL0000169
    CSI 4.08
    rCSI 9.04%
    PRS 16.84
  • BEST4+ enteroycte CL4030026
    CSI 4.06
    rCSI 5.05%
    PRS 19.27
  • colon epithelial cell CL0011108
    CSI 4.03
    rCSI 4.22%
    PRS 16.95
  • cerebellar granule cell CL0001031
    CSI 3.95
    rCSI 5.81%
    PRS 16.68
  • cerebral cortex endothelial cell CL1001602
    CSI 3.7
    rCSI 6.4%
    PRS 13.83
  • promonocyte CL0000559
    CSI 3.7
    rCSI 6.33%
    PRS 24.67
  • chondrocyte CL0000138
    CSI 3.64
    rCSI 5.78%
    PRS 15.36
  • pulmonary ionocyte CL0017000
    CSI 3.56
    rCSI 4.33%
    PRS 22.83
  • tissue-resident macrophage CL0000864
    CSI 3.54
    rCSI 16.55%
    PRS 36.41
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 3.48
    rCSI 4.21%
    PRS 21.71
  • brush cell of tracheobronchial tree CL0002075
    CSI 3.47
    rCSI 10.29%
    PRS 25.66
  • hematopoietic precursor cell CL0008001
    CSI 3.46
    rCSI 3.56%
    PRS 29.46
  • lung pericyte CL0009089
    CSI 3.43
    rCSI 9.05%
    PRS 21.69
  • alveolar macrophage CL0000583
    CSI 3.35
    rCSI 5.52%
    PRS 21.44
  • melanocyte CL0000148
    CSI 3.31
    rCSI 2.45%
    PRS 15.87
  • mucosal invariant T cell CL0000940
    CSI 3.28
    rCSI 2.65%
    PRS 28.52
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 3.17
    rCSI 2.44%
    PRS 16.77
  • fallopian tube secretory epithelial cell CL4030006
    CSI 3.16
    rCSI 3.04%
    PRS 18.83
  • direct pathway medium spiny neuron CL4023026
    CSI 3.15
    rCSI 75.44%
    PRS 9.02
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.12
    rCSI 2.5%
    PRS 32.46
  • midbrain dopaminergic neuron CL2000097
    CSI 3.1
    rCSI 19.88%
    PRS 27.63
  • indirect pathway medium spiny neuron CL4023029
    CSI 3.09
    rCSI 74.57%
    PRS 9.96
  • cerebral cortex neuron CL0010012
    CSI 3.07
    rCSI 12.53%
    PRS 18.54
  • paneth cell CL0000510
    CSI 2.98
    rCSI 4.4%
    PRS 28.38
  • Mueller cell CL0000636
    CSI 2.98
    rCSI 6.8%
    PRS 15.62
  • myelocyte CL0002193
    CSI 2.9
    rCSI 19.05%
    PRS 53.41
  • pancreatic D cell CL0000173
    CSI 2.88
    rCSI 2.84%
    PRS 19.74
  • ciliated cell CL0000064
    CSI 2.87
    rCSI 4.65%
    PRS 18.39
  • peripheral nervous system neuron CL2000032
    CSI 2.86
    rCSI 3.9%
    PRS 16.12
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 2.86
    rCSI 7.45%
    PRS 16.7
  • early lymphoid progenitor CL0000936
    CSI 2.83
    rCSI 2.49%
    PRS 20.82
  • immature B cell CL0000816
    CSI 2.82
    rCSI 2.1%
    PRS 26.86
  • CD14-positive monocyte CL0001054
    CSI 2.78
    rCSI 3.46%
    PRS 25.68
  • enteric neuron CL0007011
    CSI 2.75
    rCSI 40.66%
    PRS 43.64
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 2.7
    rCSI 16.34%
    PRS 40.06
  • central memory CD4-positive, alpha-beta T cell CL0000904
    CSI 2.69
    rCSI 1.59%
    PRS 25.26
  • radial glial cell CL0000681
    CSI 2.68
    rCSI 3.73%
    PRS 18.63
  • enteric smooth muscle cell CL0002504
    CSI 2.65
    rCSI 3.79%
    PRS 20.4
  • astrocyte of the cerebral cortex CL0002605
    CSI 2.62
    rCSI 5.88%
    PRS 11.24
  • vascular leptomeningeal cell CL4023051
    CSI 2.6
    rCSI 4.55%
    PRS 13.65
  • adipocyte CL0000136
    CSI 2.55
    rCSI 3.28%
    PRS 17.7
  • perivascular cell CL4033054
    CSI 2.54
    rCSI 3.48%
    PRS 20.56
  • respiratory hillock cell CL4030023
    CSI 2.54
    rCSI 4.53%
    PRS 30.33
  • central nervous system neuron CL2000029
    CSI 2.53
    rCSI 18.62%
    PRS 10.35
  • double negative thymocyte CL0002489
    CSI 2.53
    rCSI 1.76%
    PRS 21.63
  • placental villous trophoblast CL2000060
    CSI 2.49
    rCSI 3.84%
    PRS 17.02
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 2.47
    rCSI 5.63%
    PRS 18.75
  • fibroblast of cardiac tissue CL0002548
    CSI 2.39
    rCSI 11.46%
    PRS 13.68
  • glutamatergic neuron CL0000679
    CSI 2.35
    rCSI 4.83%
    PRS 18.03
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 2.25
    rCSI 1.62%
    PRS 24.89
  • renal alpha-intercalated cell CL0005011
    CSI 2.25
    rCSI 3%
    PRS 23.8
  • keratinocyte CL0000312
    CSI 2.24
    rCSI 1.88%
    PRS 21.68
  • colonocyte CL1000347
    CSI 2.23
    rCSI 3.2%
    PRS 24.79
  • central nervous system macrophage CL0000878
    CSI 2.23
    rCSI 7.4%
    PRS 20.54
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 2.21
    rCSI 6.33%
    PRS 26.84
  • pulmonary capillary endothelial cell CL4028001
    CSI 2.18
    rCSI 4.16%
    PRS 28.78
  • alternatively activated macrophage CL0000890
    CSI 2.16
    rCSI 2.72%
    PRS 27.96
  • class switched memory B cell CL0000972
    CSI 2.16
    rCSI 1.61%
    PRS 30.54
  • podocyte CL0000653
    CSI 2.15
    rCSI 9.56%
    PRS 17.76
  • common myeloid progenitor CL0000049
    CSI 2.08
    rCSI 1.68%
    PRS 18.18
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 2.04
    rCSI 2.62%
    PRS 17.57
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 2.02
    rCSI 1.54%
    PRS 23.92
  • unswitched memory B cell CL0000970
    CSI 2.01
    rCSI 1.69%
    PRS 28.89
  • monocyte CL0000576
    CSI 2
    rCSI 3.62%
    PRS 45.98
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 2
    rCSI 2.31%
    PRS 15.92
  • helper T cell CL0000912
    CSI 1.99
    rCSI 2.82%
    PRS 25.11
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 1.98
    rCSI 10.25%
    PRS 35.27
  • skeletal muscle satellite cell CL0000594
    CSI 1.98
    rCSI 5.8%
    PRS 52.8
  • subcutaneous adipocyte CL0002521
    CSI 1.98
    rCSI 10.12%
    PRS 18.2
  • mucous neck cell CL0000651
    CSI 1.97
    rCSI 2.83%
    PRS 28.79
  • renal principal cell CL0005009
    CSI 1.93
    rCSI 5.01%
    PRS 23.44
  • periportal region hepatocyte CL0019026
    CSI 1.91
    rCSI 7.43%
    PRS 24.62
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 1.89
    rCSI 3.44%
    PRS 15.07
  • luminal cell of prostate epithelium CL0002340
    CSI -1.8
    rCSI -9.6%
    PRS 32.3%
  • activated CD8-positive, alpha-beta T cell, human CL0001049
    CSI -1.5
    rCSI -2.5%
    PRS 35.5%
  • vein endothelial cell of respiratory system CL4033008
    CSI 0.1
    rCSI 0.6%
    PRS 35.1%
  • mesenchymal stem cell CL0000134
    CSI 0.1
    rCSI 1.0%
    PRS 32.4%
  • amacrine cell CL0000561
    CSI 0.2
    rCSI 0.4%
    PRS 13.9%
  • cytotoxic T cell CL0000910
    CSI 0.2
    rCSI 1.0%
    PRS 26.7%
  • erythroid progenitor cell CL0000038
    CSI 0.2
    rCSI 1.0%
    PRS 27.6%
  • regular ventricular cardiac myocyte CL0002131
    CSI 0.2
    rCSI 1.1%
    PRS 14.1%
  • mucus secreting cell CL0000319
    CSI 0.2
    rCSI 0.3%
    PRS 23.4%
  • enterocyte of epithelium of small intestine CL1000334
    CSI 0.2
    rCSI 3.2%
    PRS 43.9%
  • deuterosomal cell CL4033044
    CSI 0.3
    rCSI 1.1%
    PRS 29.3%
  • GABAergic interneuron CL0011005
    CSI 0.3
    rCSI 5.3%
    PRS 14.6%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.3
    rCSI 2.5%
    PRS 33.1%
  • GABAergic amacrine cell CL4030027
    CSI 0.4
    rCSI 1.2%
    PRS 15.7%
  • kidney distal convoluted tubule epithelial cell CL1000849
    CSI 0.4
    rCSI 3.7%
    PRS 24.0%
  • mesenchymal cell CL0008019
    CSI 0.4
    rCSI 0.9%
    PRS 18.3%
  • pancreatic PP cell CL0002275
    CSI 0.4
    rCSI 1.4%
    PRS 31.4%
  • respiratory goblet cell CL0002370
    CSI 0.4
    rCSI 3.8%
    PRS 34.5%
  • regular atrial cardiac myocyte CL0002129
    CSI 0.4
    rCSI 1.2%
    PRS 19.1%
  • ON parasol ganglion cell CL4033052
    CSI 0.4
    rCSI 5.3%
    PRS 13.4%
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 0.4
    rCSI 0.9%
    PRS 11.3%
  • ON midget ganglion cell CL4033046
    CSI 0.4
    rCSI 7.8%
    PRS 14.4%
  • eosinophil CL0000771
    CSI 0.4
    rCSI 2.5%
    PRS 45.5%
  • pancreatic epsilon cell CL0005019
    CSI 0.4
    rCSI 1.9%
    PRS 40.9%
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 0.4
    rCSI 3.6%
    PRS 29.2%
  • OFF midget ganglion cell CL4033047
    CSI 0.4
    rCSI 8.4%
    PRS 15.4%
  • Hofbauer cell CL3000001
    CSI 0.4
    rCSI 0.8%
    PRS 22.9%
  • epithelial cell of proximal tubule CL0002306
    CSI 0.4
    rCSI 1.0%
    PRS 17.9%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 0.4
    rCSI 2.3%
    PRS 31.2%
  • diffuse bipolar 2 cell CL4033028
    CSI 0.5
    rCSI 3.5%
    PRS 19.3%
  • S cone cell CL0003050
    CSI 0.5
    rCSI 2.2%
    PRS 15.6%
  • primitive red blood cell CL0002355
    CSI 0.5
    rCSI 2.7%
    PRS 32.2%
  • glandular epithelial cell CL0000150
    CSI 0.5
    rCSI 1.3%
    PRS 35.2%
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 0.5
    rCSI 0.7%
    PRS 25.8%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.5
    rCSI 1.4%
    PRS 28.1%
  • common dendritic progenitor CL0001029
    CSI 0.5
    rCSI 0.6%
    PRS 23.5%
  • P/D1 enteroendocrine cell CL0002268
    CSI 0.5
    rCSI 2.8%
    PRS 42.4%
  • progenitor cell CL0011026
    CSI 0.5
    rCSI 1.1%
    PRS 29.2%
  • myeloid dendritic cell, human CL0001057
    CSI 0.6
    rCSI 3.2%
    PRS 53.8%
  • diffuse bipolar 3a cell CL4033029
    CSI 0.6
    rCSI 3.9%
    PRS 18.7%
  • pancreatic ductal cell CL0002079
    CSI 0.6
    rCSI 1.1%
    PRS 18.6%
  • parietal epithelial cell CL1000452
    CSI 0.6
    rCSI 1.5%
    PRS 15.1%
  • retina horizontal cell CL0000745
    CSI 0.6
    rCSI 0.9%
    PRS 16.8%
  • forebrain radial glial cell CL0013000
    CSI 0.6
    rCSI 1.9%
    PRS 26.2%
  • H1 horizontal cell CL0004217
    CSI 0.6
    rCSI 2.3%
    PRS 24.7%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 0.6
    rCSI 1.0%
    PRS 23.9%
  • pulmonary artery endothelial cell CL1001568
    CSI 0.6
    rCSI 0.8%
    PRS 27.4%
  • glycinergic amacrine cell CL4030028
    CSI 0.6
    rCSI 1.6%
    PRS 18.0%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 0.6
    rCSI 1.5%
    PRS 28.8%
  • flat midget bipolar cell CL4033033
    CSI 0.6
    rCSI 4.4%
    PRS 18.7%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 0.6
    rCSI 1.8%
    PRS 20.5%
  • mesangial cell CL0000650
    CSI 0.6
    rCSI 2.6%
    PRS 25.2%
  • transit amplifying cell of small intestine CL0009012
    CSI 0.6
    rCSI 2.8%
    PRS 33.6%
  • invaginating midget bipolar cell CL4033034
    CSI 0.6
    rCSI 3.8%
    PRS 19.1%
  • transit amplifying cell CL0009010
    CSI 0.6
    rCSI 1.0%
    PRS 29.4%
  • colon macrophage CL0009038
    CSI 0.7
    rCSI 3.0%
    PRS 37.5%
  • common lymphoid progenitor CL0000051
    CSI 0.7
    rCSI 0.9%
    PRS 34.5%
  • CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human CL0001074
    CSI 0.7
    rCSI 7.5%
    PRS 61.4%
  • type EC enteroendocrine cell CL0000577
    CSI 0.7
    rCSI 2.3%
    PRS 29.5%
  • myeloid leukocyte CL0000766
    CSI 0.7
    rCSI 0.6%
    PRS 18.8%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 0.7
    rCSI 0.4%
    PRS 22.1%
  • extravillous trophoblast CL0008036
    CSI 0.7
    rCSI 0.8%
    PRS 15.9%
  • mature alpha-beta T cell CL0000791
    CSI 0.7
    rCSI 2.4%
    PRS 31.1%
  • respiratory basal cell CL0002633
    CSI 0.7
    rCSI 0.7%
    PRS 21.4%
  • medium spiny neuron CL1001474
    CSI 0.7
    rCSI 5.9%
    PRS 8.4%
  • squamous epithelial cell CL0000076
    CSI 0.7
    rCSI 1.6%
    PRS 22.5%
  • large pre-B-II cell CL0000957
    CSI 0.7
    rCSI 2.0%
    PRS 31.0%
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 0.8
    rCSI 1.6%
    PRS 12.0%
  • duct epithelial cell CL0000068
    CSI 0.8
    rCSI 1.1%
    PRS 19.2%
  • lung secretory cell CL1000272
    CSI 0.8
    rCSI 1.9%
    PRS 16.8%
  • IgA plasma cell CL0000987
    CSI 0.8
    rCSI 0.8%
    PRS 33.5%
  • bronchial goblet cell CL1000312
    CSI 0.8
    rCSI 3.1%
    PRS 38.4%
  • IgG plasma cell CL0000985
    CSI 0.8
    rCSI 0.9%
    PRS 31.4%
  • kidney epithelial cell CL0002518
    CSI 0.8
    rCSI 1.5%
    PRS 40.2%
  • intestinal tuft cell CL0019032
    CSI 0.8
    rCSI 1.2%
    PRS 20.8%
  • Schwann cell CL0002573
    CSI 0.8
    rCSI 2.2%
    PRS 20.9%
  • erythroid lineage cell CL0000764
    CSI 0.8
    rCSI 5.0%
    PRS 40.1%
  • endothelial cell of uterus CL0009095
    CSI 0.8
    rCSI 5.7%
    PRS 47.5%
  • alveolar type 1 fibroblast cell CL4028004
    CSI 0.8
    rCSI 0.9%
    PRS 20.6%
  • intestinal epithelial cell CL0002563
    CSI 0.8
    rCSI 0.8%
    PRS 19.0%
  • diffuse bipolar 6 cell CL4033032
    CSI 0.8
    rCSI 4.2%
    PRS 21.1%
  • mature B cell CL0000785
    CSI 0.8
    rCSI 0.7%
    PRS 22.7%
  • retinal ganglion cell CL0000740
    CSI 0.8
    rCSI 1.8%
    PRS 13.0%
  • enteroendocrine cell of small intestine CL0009006
    CSI 0.8
    rCSI 1.8%
    PRS 27.6%
  • small intestine goblet cell CL1000495
    CSI 0.8
    rCSI 1.8%
    PRS 24.3%
  • brush cell CL0002204
    CSI 0.8
    rCSI 1.6%
    PRS 44.4%
  • basal cell CL0000646
    CSI 0.8
    rCSI 1.1%
    PRS 19.9%
  • alveolar adventitial fibroblast CL4028006
    CSI 0.8
    rCSI 1.3%
    PRS 18.3%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 0.8
    rCSI 2.1%
    PRS 13.8%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 0.8
    rCSI 1.0%
    PRS 31.6%
  • Bergmann glial cell CL0000644
    CSI 0.8
    rCSI 1.2%
    PRS 18.1%
  • promyelocyte CL0000836
    CSI 0.9
    rCSI 1.3%
    PRS 25.5%
  • dendritic cell, human CL0001056
    CSI 0.9
    rCSI 1.3%
    PRS 21.6%
  • adventitial cell CL0002503
    CSI 0.9
    rCSI 2.1%
    PRS 27.7%
  • cerebellar neuron CL1001611
    CSI 0.9
    rCSI 7.7%
    PRS 11.6%
  • small pre-B-II cell CL0000954
    CSI 0.9
    rCSI 0.9%
    PRS 36.9%
  • tracheal goblet cell CL1000329
    CSI 0.9
    rCSI 1.9%
    PRS 35.5%
  • ventricular cardiac muscle cell CL2000046
    CSI 0.9
    rCSI 3.1%
    PRS 61.8%
  • basophil CL0000767
    CSI 0.9
    rCSI 1.9%
    PRS 36.3%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 0.9
    rCSI 1.6%
    PRS 27.7%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [ARID1A](/details-gene/8289) (AT-rich interaction domain 1A) encodes a large nuclear protein that functions as a critical subunit of the human SWI/SNF chromatin remodeling complex. This complex utilizes the energy of ATP hydrolysis to mobilize nucleosomes, thereby regulating gene expression by modulating the accessibility of DNA to transcription factors. As a key epigenetic regulator, [ARID1A](/details-gene/8289) plays a fundamental role in a wide range of cellular processes, including cell cycle control, DNA repair, and differentiation. Its expression profile indicates a particularly significant role in the central nervous system, with high specificity in various neuronal subtypes, as well as in hematopoietic progenitors and other developmentally active cell types. ## Cellular Roles and Expression Landscape The expression pattern of [ARID1A](/details-gene/8289) highlights its essential function in cells with complex transcriptional programs and developmental potential. **Overall**, the gene shows the highest significance in diverse neuronal populations, including [lamp5 GABAergic cortical interneuron](/details-cell/CL4023011) (CSI: 25.22) and multiple glutamatergic neuron subtypes, suggesting a crucial role in establishing and maintaining specific neuronal identities and functions within the cortex. Beyond the nervous system, [ARID1A](/details-gene/8289) is also a significant marker in several other lineages. Its high CSI in [Kupffer cell](/details-cell/CL0000091), [erythroblast](/details-cell/CL0000765), and [lymphoid lineage restricted progenitor cell](/details-cell/CL0000838) underscores its importance in liver-resident macrophage function and during hematopoiesis. The broad, yet specific, expression across these distinct cell types—including neurons, immune cells, and erythroid precursors—is consistent with its role as a master regulator of chromatin architecture essential for lineage-specific gene expression programs. Conversely, the relatively low significance in terminally differentiated cell types like [luminal cell of prostate epithelium](/details-cell/CL0002340) and, notably, [activated CD8-positive, alpha-beta T cell, human](/details-cell/CL0001049), suggests that its role may be more pronounced during differentiation and progenitor stages than in certain terminally activated or quiescent states. ## Pathways and Molecular Function The functional annotations for [ARID1A](/details-gene/8289) confirm its central role in epigenetic regulation. It is an integral component of the [SWI/SNF complex](/details-cell/GO:0016514) and directly participates in [Chromatin remodeling](/details-cell/GO:0006338) and the overarching process of [Chromatin organization](/details-cell/R-HSA-4839726) [Link](https://doi.org/10.1101/gad.10.17.2117). This function is mediated through its molecular activities, including [Dna binding](/details-cell/GO:0003677) and [Nucleosome binding](/details-cell/GO:0031491), which facilitate the repositioning of nucleosomes to control [Gene expression (transcription)](/details-cell/R-HSA-74160). The gene's involvement in biological processes such as [Nervous system development](/details-cell/GO:0007399) and [Positive regulation of t cell differentiation](/details-cell/GO:0045582) is consistent with its high expression in neurons and lymphoid progenitors, respectively. Furthermore, its participation in cell cycle checkpoints, including [Regulation of g1/s transition of mitotic cell cycle](/details-cell/GO:2000045), and DNA damage response pathways like [Positive regulation of double-strand break repair](/details-cell/GO:2000781), highlights its function as a guardian of genomic stability. These roles as a transcriptional coactivator and cell cycle regulator are supported by early studies characterizing it as a key subunit of SWI/SNF complexes that promote transcription [Link](https://doi.org/10.1074/jbc.m205961200). ## Research Directions [ARID1A](/details-gene/8289) is one of the most frequently mutated genes in human cancer, where it typically acts as a tumor suppressor. Its widespread importance in differentiation and cell cycle control makes it a critical area of ongoing research. Based on its expression profile and known functions, several testable hypotheses can be proposed: 1. The high and specific expression of [ARID1A](/details-gene/8289) across diverse neuronal subtypes suggests that it is required to maintain the unique transcriptional programs that define mature neuronal identities. Its loss may lead to a de-differentiation or transcriptional scrambling that contributes to neurological disorders. 2. Given its high significance in [lymphoid lineage restricted progenitor cell](/details-cell/CL0000838) but low significance in [activated CD8-positive, alpha-beta T cell, human](/details-cell/CL0001049), [ARID1A](/details-gene/8289) expression may be actively downregulated during T cell activation. This downregulation could be a necessary epigenetic event that permits the rapid transcriptional changes required for effector function, and its forced maintenance might impair immune responses. A compelling experimental approach to test the first hypothesis would involve the use of a conditional knockout mouse model (e.g., using a Camk2a-Cre driver) to specifically delete [ARID1A](/details-gene/8289) in forebrain excitatory neurons post-development. Subsequent single-nucleus RNA sequencing (snRNA-seq) and ATAC-seq of cortical tissue would allow for a high-resolution assessment of whether neuronal subtypes lose their distinct transcriptional identities and chromatin accessibility profiles, providing direct evidence for its role in maintaining the adult neuronal state. As a therapeutic target, [ARID1A](/details-gene/8289) presents a unique challenge. In cancers where it is lost, the therapeutic strategy is not inhibition but rather the exploitation of vulnerabilities created by its absence. This has led to the successful identification of synthetic lethal interactions, where inhibiting other proteins (such as EZH2 or PARP) is selectively toxic to [ARID1A](/details-gene/8289)-deficient cancer cells. Therefore, it serves as a critical biomarker for patient stratification for therapies targeting these synthetic lethal partners, rather than being a direct target for inhibition itself.

Genular Protein ID: 1505880103

Symbol: ARI1A_HUMAN

Name: AT-rich interactive domain-containing protein 1A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11073988

Title: A specificity and targeting subunit of a human SWI/SNF family-related chromatin-remodeling complex.

PubMed ID: 11073988

DOI: 10.1128/mcb.20.23.8879-8888.2000

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

PubMed ID: 12200431

Title: Largest subunits of the human SWI/SNF chromatin-remodeling complex promote transcriptional activation by steroid hormone receptors.

PubMed ID: 12200431

DOI: 10.1074/jbc.m205961200

PubMed ID: 11734557

Title: SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.

PubMed ID: 11734557

DOI: 10.1074/jbc.m108702200

PubMed ID: 10757798

Title: The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity.

PubMed ID: 10757798

DOI: 10.1128/mcb.20.9.3137-3146.2000

PubMed ID: 9434167

Title: Molecular cloning and expression of a novel human cDNA containing CAG repeats.

PubMed ID: 9434167

DOI: 10.1016/s0378-1119(97)00525-8

PubMed ID: 11318604

Title: Characterization of mammalian orthologues of the Drosophila osa gene: cDNA cloning, expression, chromosomal localization, and direct physical interaction with Brahma chromatin-remodeling complex.

PubMed ID: 11318604

DOI: 10.1006/geno.2001.6477

PubMed ID: 8804307

Title: Diversity and specialization of mammalian SWI/SNF complexes.

PubMed ID: 8804307

DOI: 10.1101/gad.10.17.2117

PubMed ID: 11780067

Title: Selectivity of chromatin-remodelling cofactors for ligand-activated transcription.

PubMed ID: 11780067

DOI: 10.1038/414924a

PubMed ID: 11988099

Title: Cloning and characterization of hELD/OSA1, a novel BRG1 interacting protein.

PubMed ID: 11988099

DOI: 10.1042/bj3640255

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 16964243

Title: A probability-based approach for high-throughput protein phosphorylation analysis and site localization.

PubMed ID: 16964243

DOI: 10.1038/nbt1240

PubMed ID: 17525332

Title: ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.

PubMed ID: 17525332

DOI: 10.1126/science.1140321

PubMed ID: 18220336

Title: Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.

PubMed ID: 18220336

DOI: 10.1021/pr0705441

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 22426308

Title: Mutations affecting components of the SWI/SNF complex cause Coffin-Siris syndrome.

PubMed ID: 22426308

DOI: 10.1038/ng.2219

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 24129315

Title: Immunoaffinity enrichment and mass spectrometry analysis of protein methylation.

PubMed ID: 24129315

DOI: 10.1074/mcp.o113.027870

PubMed ID: 12672490

Title: Recent advances in understanding chromatin remodeling by SWI/SNF complexes.

PubMed ID: 12672490

DOI: 10.1016/s0959-437x(03)00022-4

PubMed ID: 12665591

Title: Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner.

PubMed ID: 12665591

DOI: 10.1128/mcb.23.8.2942-2952.2003

PubMed ID: 15170388

Title: Two related ARID family proteins are alternative subunits of human SWI/SNF complexes.

PubMed ID: 15170388

DOI: 10.1042/bj20040524

PubMed ID: 18765789

Title: Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex.

PubMed ID: 18765789

DOI: 10.1101/gad.471408

PubMed ID: 22952240

Title: SWI/SNF chromatin-remodeling factors: multiscale analyses and diverse functions.

PubMed ID: 22952240

DOI: 10.1074/jbc.r111.309302

PubMed ID: 26601204

Title: Mammalian SWI/SNF chromatin remodeling complexes and cancer: Mechanistic insights gained from human genomics.

PubMed ID: 26601204

DOI: 10.1126/sciadv.1500447

PubMed ID: 26614907

Title: Identification and functional characterization of a novel bipartite nuclear localization sequence in ARID1A.

PubMed ID: 26614907

DOI: 10.1016/j.bbrc.2015.11.080

PubMed ID: 14722072

Title: Structure and DNA-binding sites of the SWI1 AT-rich interaction domain (ARID) suggest determinants for sequence-specific DNA recognition.

PubMed ID: 14722072

DOI: 10.1074/jbc.m312115200

PubMed ID: 21248752

Title: Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.

PubMed ID: 21248752

DOI: 10.1038/nature09639

PubMed ID: 22009941

Title: Somatic mutations in the chromatin remodeling gene ARID1A occur in several tumor types.

PubMed ID: 22009941

DOI: 10.1002/humu.21633

PubMed ID: 23906836

Title: A comprehensive molecular study on Coffin-Siris and Nicolaides-Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling.

PubMed ID: 23906836

DOI: 10.1093/hmg/ddt366

Sequence Information:

  • Length: 2285
  • Mass: 242045
  • Checksum: 85BC5B6061625D8E
  • Sequence:
  • MAAQVAPAAA SSLGNPPPPP PSELKKAEQQ QREEAGGEAA AAAAAERGEM KAAAGQESEG 
    PAVGPPQPLG KELQDGAESN GGGGGGGAGS GGGPGAEPDL KNSNGNAGPR PALNNNLTEP 
    PGGGGGGSSD GVGAPPHSAA AALPPPAYGF GQPYGRSPSA VAAAAAAVFH QQHGGQQSPG 
    LAALQSGGGG GLEPYAGPQQ NSHDHGFPNH QYNSYYPNRS AYPPPAPAYA LSSPRGGTPG 
    SGAAAAAGSK PPPSSSASAS SSSSSFAQQR FGAMGGGGPS AAGGGTPQPT ATPTLNQLLT 
    SPSSARGYQG YPGGDYSGGP QDGGAGKGPA DMASQCWGAA AAAAAAAAAS GGAQQRSHHA 
    PMSPGSSGGG GQPLARTPQP SSPMDQMGKM RPQPYGGTNP YSQQQGPPSG PQQGHGYPGQ 
    PYGSQTPQRY PMTMQGRAQS AMGGLSYTQQ IPPYGQQGPS GYGQQGQTPY YNQQSPHPQQ 
    QQPPYSQQPP SQTPHAQPSY QQQPQSQPPQ LQSSQPPYSQ QPSQPPHQQS PAPYPSQQST 
    TQQHPQSQPP YSQPQAQSPY QQQQPQQPAP STLSQQAAYP QPQSQQSQQT AYSQQRFPPP 
    QELSQDSFGS QASSAPSMTS SKGGQEDMNL SLQSRPSSLP DLSGSIDDLP MGTEGALSPG 
    VSTSGISSSQ GEQSNPAQSP FSPHTSPHLP GIRGPSPSPV GSPASVAQSR SGPLSPAAVP 
    GNQMPPRPPS GQSDSIMHPS MNQSSIAQDR GYMQRNPQMP QYSSPQPGSA LSPRQPSGGQ 
    IHTGMGSYQQ NSMGSYGPQG GQYGPQGGYP RQPNYNALPN ANYPSAGMAG GINPMGAGGQ 
    MHGQPGIPPY GTLPPGRMSH ASMGNRPYGP NMANMPPQVG SGMCPPPGGM NRKTQETAVA 
    MHVAANSIQN RPPGYPNMNQ GGMMGTGPPY GQGINSMAGM INPQGPPYSM GGTMANNSAG 
    MAASPEMMGL GDVKLTPATK MNNKADGTPK TESKSKKSSS STTTNEKITK LYELGGEPER 
    KMWVDRYLAF TEEKAMGMTN LPAVGRKPLD LYRLYVSVKE IGGLTQVNKN KKWRELATNL 
    NVGTSSSAAS SLKKQYIQCL YAFECKIERG EDPPPDIFAA ADSKKSQPKI QPPSPAGSGS 
    MQGPQTPQST SSSMAEGGDL KPPTPASTPH SQIPPLPGMS RSNSVGIQDA FNDGSDSTFQ 
    KRNSMTPNPG YQPSMNTSDM MGRMSYEPNK DPYGSMRKAP GSDPFMSSGQ GPNGGMGDPY 
    SRAAGPGLGN VAMGPRQHYP YGGPYDRVRT EPGIGPEGNM STGAPQPNLM PSNPDSGMYS 
    PSRYPPQQQQ QQQQRHDSYG NQFSTQGTPS GSPFPSQQTT MYQQQQQNYK RPMDGTYGPP 
    AKRHEGEMYS VPYSTGQGQP QQQQLPPAQP QPASQQQAAQ PSPQQDVYNQ YGNAYPATAT 
    AATERRPAGG PQNQFPFQFG RDRVSAPPGT NAQQNMPPQM MGGPIQASAE VAQQGTMWQG 
    RNDMTYNYAN RQSTGSAPQG PAYHGVNRTD EMLHTDQRAN HEGSWPSHGT RQPPYGPSAP 
    VPPMTRPPPS NYQPPPSMQN HIPQVSSPAP LPRPMENRTS PSKSPFLHSG MKMQKAGPPV 
    PASHIAPAPV QPPMIRRDIT FPPGSVEATQ PVLKQRRRLT MKDIGTPEAW RVMMSLKSGL 
    LAESTWALDT INILLYDDNS IMTFNLSQLP GLLELLVEYF RRCLIEIFGI LKEYEVGDPG 
    QRTLLDPGRF SKVSSPAPME GGEEEEELLG PKLEEEEEEE VVENDEEIAF SGKDKPASEN 
    SEEKLISKFD KLPVKIVQKN DPFVVDCSDK LGRVQEFDSG LLHWRIGGGD TTEHIQTHFE 
    SKTELLPSRP HAPCPPAPRK HVTTAEGTPG TTDQEGPPPD GPPEKRITAT MDDMLSTRSS 
    TLTEDGAKSS EAIKESSKFP FGISPAQSHR NIKILEDEPH SKDETPLCTL LDWQDSLAKR 
    CVCVSNTIRS LSFVPGNDFE MSKHPGLLLI LGKLILLHHK HPERKQAPLT YEKEEEQDQG 
    VSCNKVEWWW DCLEMLRENT LVTLANISGQ LDLSPYPESI CLPVLDGLLH WAVCPSAEAQ 
    DPFSTLGPNA VLSPQRLVLE TLSKLSIQDN NVDLILATPP FSRLEKLYST MVRFLSDRKN 
    PVCREMAVVL LANLAQGDSL AARAIAVQKG SIGNLLGFLE DSLAATQFQQ SQASLLHMQN 
    PPFEPTSVDM MRRAARALLA LAKVDENHSE FTLYESRLLD ISVSPLMNSL VSQVICDVLF 
    LIGQS