Details for: H2BC15

Gene ID: 8341

Symbol: H2BC15

Ensembl ID: ENSG00000233822

Description: H2B clustered histone 15

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 49.3104
    Cell Significance Index: -7.6700
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 32.1317
    Cell Significance Index: -8.1500
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 7.4293
    Cell Significance Index: -9.1600
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 2.3593
    Cell Significance Index: -9.3100
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 1.8757
    Cell Significance Index: 121.0100
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 1.8135
    Cell Significance Index: -5.5700
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 1.4541
    Cell Significance Index: 276.7200
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 1.3663
    Cell Significance Index: 61.9300
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.9606
    Cell Significance Index: 66.4300
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.8951
    Cell Significance Index: 25.7900
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.7015
    Cell Significance Index: 633.3900
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.6599
    Cell Significance Index: 39.6200
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.6512
    Cell Significance Index: 70.8300
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.6437
    Cell Significance Index: 63.6800
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.5327
    Cell Significance Index: 86.6400
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.5313
    Cell Significance Index: 11.5100
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.4598
    Cell Significance Index: 24.1400
  • Cell Name: epithelial cell of uterus (CL0002149)
    Fold Change: 0.3798
    Cell Significance Index: 5.2700
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: 0.3784
    Cell Significance Index: 5.6700
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.3480
    Cell Significance Index: 18.0800
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 0.3139
    Cell Significance Index: 8.0200
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: 0.2680
    Cell Significance Index: 3.2000
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: 0.2349
    Cell Significance Index: 3.5400
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 0.2290
    Cell Significance Index: 6.1300
  • Cell Name: large intestine goblet cell (CL1000320)
    Fold Change: 0.2261
    Cell Significance Index: 2.4500
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.1892
    Cell Significance Index: 34.1000
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.1879
    Cell Significance Index: 37.2900
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.1697
    Cell Significance Index: 21.7600
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.1631
    Cell Significance Index: 5.7300
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.1589
    Cell Significance Index: 5.5200
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 0.1433
    Cell Significance Index: 1.3200
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 0.1403
    Cell Significance Index: 3.9200
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.1248
    Cell Significance Index: 14.7200
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.1140
    Cell Significance Index: 15.6600
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.1058
    Cell Significance Index: 1.7700
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.1044
    Cell Significance Index: 57.0400
  • Cell Name: DN3 thymocyte (CL0000807)
    Fold Change: 0.0888
    Cell Significance Index: 0.8900
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: 0.0810
    Cell Significance Index: 23.3200
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: 0.0784
    Cell Significance Index: 2.5100
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.0693
    Cell Significance Index: 8.5200
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 0.0672
    Cell Significance Index: 3.1600
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.0545
    Cell Significance Index: 24.0800
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: 0.0498
    Cell Significance Index: 3.8300
  • Cell Name: cone retinal bipolar cell (CL0000752)
    Fold Change: 0.0441
    Cell Significance Index: 0.3400
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: 0.0419
    Cell Significance Index: 0.6000
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 0.0416
    Cell Significance Index: 0.8700
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 0.0373
    Cell Significance Index: 1.7400
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.0320
    Cell Significance Index: 2.0200
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.0302
    Cell Significance Index: 10.8500
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: 0.0289
    Cell Significance Index: 0.3700
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.0276
    Cell Significance Index: 3.5700
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: 0.0204
    Cell Significance Index: 2.9700
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: 0.0194
    Cell Significance Index: 12.3200
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0055
    Cell Significance Index: 10.2700
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 0.0053
    Cell Significance Index: 0.1400
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.0045
    Cell Significance Index: 0.7800
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: 0.0033
    Cell Significance Index: 6.0900
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: 0.0026
    Cell Significance Index: 0.1200
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 0.0017
    Cell Significance Index: 0.0500
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0004
    Cell Significance Index: -0.6700
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0018
    Cell Significance Index: -0.3700
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: -0.0037
    Cell Significance Index: -0.1000
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.0047
    Cell Significance Index: -0.1000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0049
    Cell Significance Index: -3.7400
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.0053
    Cell Significance Index: -0.2000
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: -0.0053
    Cell Significance Index: -0.3800
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0054
    Cell Significance Index: -7.2900
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0092
    Cell Significance Index: -0.9400
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0095
    Cell Significance Index: -7.0500
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0113
    Cell Significance Index: -8.2600
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0134
    Cell Significance Index: -6.0900
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0135
    Cell Significance Index: -7.6000
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.0183
    Cell Significance Index: -0.9300
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.0245
    Cell Significance Index: -0.4200
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.0310
    Cell Significance Index: -1.7400
  • Cell Name: mature alpha-beta T cell (CL0000791)
    Fold Change: -0.0477
    Cell Significance Index: -0.2600
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.0484
    Cell Significance Index: -1.2100
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0495
    Cell Significance Index: -10.4200
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.0561
    Cell Significance Index: -2.3000
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0581
    Cell Significance Index: -6.6600
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.0594
    Cell Significance Index: -4.4300
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: -0.0625
    Cell Significance Index: -0.5100
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0785
    Cell Significance Index: -4.8100
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.0846
    Cell Significance Index: -8.8100
  • Cell Name: myeloid lineage restricted progenitor cell (CL0000839)
    Fold Change: -0.0919
    Cell Significance Index: -1.2900
  • Cell Name: cardiac muscle cell (CL0000746)
    Fold Change: -0.1002
    Cell Significance Index: -1.4800
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -0.1041
    Cell Significance Index: -2.9900
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.1141
    Cell Significance Index: -9.0400
  • Cell Name: radial glial cell (CL0000681)
    Fold Change: -0.1281
    Cell Significance Index: -0.7600
  • Cell Name: L5/6 near-projecting glutamatergic neuron (CL4030067)
    Fold Change: -0.1509
    Cell Significance Index: -0.7900
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: -0.1531
    Cell Significance Index: -1.5900
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.1558
    Cell Significance Index: -4.0100
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.1561
    Cell Significance Index: -4.2500
  • Cell Name: skeletal muscle fibroblast (CL0011027)
    Fold Change: -0.1623
    Cell Significance Index: -1.1000
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.1886
    Cell Significance Index: -4.1300
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: -0.1895
    Cell Significance Index: -2.0600
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: -0.1954
    Cell Significance Index: -2.2200
  • Cell Name: pulmonary interstitial fibroblast (CL0002241)
    Fold Change: -0.2053
    Cell Significance Index: -1.2700
  • Cell Name: myometrial cell (CL0002366)
    Fold Change: -0.2053
    Cell Significance Index: -2.3700
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.2078
    Cell Significance Index: -4.3100

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** H2BC15 is a histone protein that is post-translationally modified at lysine 15 (H2B1N) and is enriched in chromatin modifications. It is a component of the nucleosome core and plays a central role in chromatin organization and gene regulation. H2BC15 is also involved in various cellular processes, including cell cycle regulation, DNA repair, and epigenetic regulation of gene expression. **Pathways and Functions:** H2BC15 is involved in several key pathways, including: 1. **Activation of anterior hox genes in hindbrain development during early embryogenesis**: H2BC15 is required for the proper expression of anterior hox genes, which are essential for hindbrain development. 2. **Assembly of the orc complex at the origin of replication**: H2BC15 is involved in the assembly of the orc complex, which is required for DNA replication and repair. 3. **Base-excision repair**: H2BC15 plays a role in base-excision repair, a mechanism for repairing damaged DNA. 4. **Cell cycle regulation**: H2BC15 is involved in the regulation of the cell cycle, including the G2/M checkpoint. 5. **Epigenetic regulation of gene expression**: H2BC15 is involved in the regulation of gene expression through chromatin modifications and histone acetylation. **Clinical Significance:** Dysregulation of H2BC15 has been implicated in various diseases, including: 1. **Cancer**: Altered expression of H2BC15 has been observed in several types of cancer, including breast, lung, and colon cancer. 2. **Neurological disorders**: H2BC15 has been implicated in neurological disorders, including Alzheimer's disease and schizophrenia. 3. **Immune system disorders**: H2BC15 is involved in the regulation of the immune system and has been implicated in autoimmune disorders, such as rheumatoid arthritis. In conclusion, H2BC15 is a histone protein that plays a crucial role in chromatin organization and gene regulation. Its dysregulation has been implicated in various diseases, highlighting the importance of further research into the mechanisms of H2BC15 and its role in human disease. **Future Directions:** Further research is needed to fully understand the mechanisms of H2BC15 and its role in human disease. Potential areas of investigation include: 1. **Mechanistic studies**: Investigating the mechanisms by which H2BC15 regulates chromatin and gene expression. 2. **Clinical studies**: Investigating the clinical significance of H2BC15 in various diseases. 3. **Therapeutic targeting**: Developing therapies that target H2BC15 or its regulatory pathways. By understanding the role of H2BC15 in chromatin organization and gene regulation, we can gain insights into the mechanisms of various diseases and develop novel therapeutic strategies.

Genular Protein ID: 3613600013

Symbol: H2B1N_HUMAN

Name: Histone H2B type 1-N

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 9439656

Title: The human histone gene cluster at the D6S105 locus.

PubMed ID: 9439656

DOI: 10.1007/s004390050630

PubMed ID: 12408966

Title: The human and mouse replication-dependent histone genes.

PubMed ID: 12408966

DOI: 10.1016/s0888-7543(02)96850-3

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 14574404

Title: The DNA sequence and analysis of human chromosome 6.

PubMed ID: 14574404

DOI: 10.1038/nature02055

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 16627869

Title: Quantitative proteomic analysis of post-translational modifications of human histones.

PubMed ID: 16627869

DOI: 10.1074/mcp.m600007-mcp200

PubMed ID: 12757711

Title: Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase.

PubMed ID: 12757711

DOI: 10.1016/s0092-8674(03)00355-6

PubMed ID: 16307923

Title: Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.

PubMed ID: 16307923

DOI: 10.1016/j.molcel.2005.09.025

PubMed ID: 16283522

Title: Inhibition of core histones acetylation by carcinogenic nickel(II).

PubMed ID: 16283522

DOI: 10.1007/s11010-005-8285-1

PubMed ID: 16713563

Title: Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

PubMed ID: 16713563

DOI: 10.1016/j.cell.2006.04.029

PubMed ID: 16319397

Title: Characterization of histones H2A and H2B variants and their post-translational modifications by mass spectrometry.

PubMed ID: 16319397

DOI: 10.1074/mcp.m500288-mcp200

PubMed ID: 21925322

Title: Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

PubMed ID: 21925322

DOI: 10.1016/j.cell.2011.08.008

PubMed ID: 21726816

Title: The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation.

PubMed ID: 21726816

DOI: 10.1016/j.molcel.2011.05.015

PubMed ID: 22389435

Title: Lysine succinylation and lysine malonylation in histones.

PubMed ID: 22389435

DOI: 10.1074/mcp.m111.015875

PubMed ID: 23824326

Title: USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing.

PubMed ID: 23824326

DOI: 10.1101/gad.211037.112

PubMed ID: 24681537

Title: Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark.

PubMed ID: 24681537

DOI: 10.1038/nchembio.1497

PubMed ID: 27105113

Title: Dynamic competing histone H4 K5K8 acetylation and butyrylation are hallmarks of highly active gene promoters.

PubMed ID: 27105113

DOI: 10.1016/j.molcel.2016.03.014

PubMed ID: 27105115

Title: Metabolic regulation of gene expression by histone lysine beta-hydroxybutyrylation.

PubMed ID: 27105115

DOI: 10.1016/j.molcel.2016.03.036

PubMed ID: 27530147

Title: PARP3 is a sensor of nicked nucleosomes and monoribosylates histone H2B(Glu2).

PubMed ID: 27530147

DOI: 10.1038/ncomms12404

PubMed ID: 31542297

Title: Glutarylation of histone H4 lysine 91 regulates chromatin dynamics.

PubMed ID: 31542297

DOI: 10.1016/j.molcel.2019.08.018

PubMed ID: 31645732

Title: Metabolic regulation of gene expression by histone lactylation.

PubMed ID: 31645732

DOI: 10.1038/s41586-019-1678-1

PubMed ID: 34874266

Title: Serine ADP-ribosylation marks nucleosomes for ALC1-dependent chromatin remodeling.

PubMed ID: 34874266

DOI: 10.7554/elife.71502

Sequence Information:

  • Length: 126
  • Mass: 13922
  • Checksum: FAEB278D44BE702F
  • Sequence:
  • MPEPSKSAPA PKKGSKKAVT KAQKKDGKKR KRSRKESYSV YVYKVLKQVH PDTGISSKAM 
    GIMNSFVNDI FERIAGEASR LAHYNKRSTI TSREIQTAVR LLLPGELAKH AVSEGTKAVT 
    KYTSSK

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.