Details for: DDX6
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 442.7651
Cell Significance Index: -68.8700 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 283.5674
Cell Significance Index: -71.9300 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 168.0813
Cell Significance Index: -79.3600 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 162.5079
Cell Significance Index: -66.0200 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 143.4431
Cell Significance Index: -73.7900 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 69.3171
Cell Significance Index: -66.1800 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 61.0646
Cell Significance Index: -75.2900 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 26.6942
Cell Significance Index: -71.5100 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 20.0124
Cell Significance Index: -78.9700 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 19.8929
Cell Significance Index: -61.1000 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 16.3073
Cell Significance Index: -35.6900 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 4.3703
Cell Significance Index: 509.3100 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 1.8272
Cell Significance Index: 117.8800 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.7879
Cell Significance Index: 358.6600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.5607
Cell Significance Index: 169.7600 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 1.4295
Cell Significance Index: 257.7000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 1.3575
Cell Significance Index: 166.9200 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 1.3095
Cell Significance Index: 469.6900 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 1.2336
Cell Significance Index: 74.0600 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 1.1858
Cell Significance Index: 162.8500 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 1.1385
Cell Significance Index: 225.9400 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 1.0666
Cell Significance Index: 65.5600 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.9914
Cell Significance Index: 55.6300 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.9861
Cell Significance Index: 435.9900 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.7986
Cell Significance Index: 436.1500 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.7909
Cell Significance Index: 19.7700 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.7801
Cell Significance Index: 59.8700 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.7573
Cell Significance Index: 89.3100 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 0.6499
Cell Significance Index: 34.1200 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.5825
Cell Significance Index: 402.8900 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.5775
Cell Significance Index: 15.4200 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.5421
Cell Significance Index: 69.5000 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.4547
Cell Significance Index: 21.2000 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.4412
Cell Significance Index: 20.0000 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.4123
Cell Significance Index: 11.8800 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.3465
Cell Significance Index: 652.3500 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.3193
Cell Significance Index: 8.6900 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.3094
Cell Significance Index: 19.5000 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.3027
Cell Significance Index: 21.4100 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.3016
Cell Significance Index: 8.4300 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 0.2415
Cell Significance Index: 11.3500 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.2093
Cell Significance Index: 15.6000 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.2092
Cell Significance Index: 35.7300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.2003
Cell Significance Index: 38.1200 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.1381
Cell Significance Index: 87.7100 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1267
Cell Significance Index: 12.5300 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.1265
Cell Significance Index: 57.4200 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.1142
Cell Significance Index: 210.5400 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: 0.1091
Cell Significance Index: 1.8700 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.0971
Cell Significance Index: 149.4500 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.0646
Cell Significance Index: 8.3500 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0455
Cell Significance Index: 61.8300 - Cell Name: cortical interneuron (CL0008031)
Fold Change: 0.0342
Cell Significance Index: 0.8200 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0204
Cell Significance Index: -14.9600 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0411
Cell Significance Index: -30.4400 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.0483
Cell Significance Index: -2.5100 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0681
Cell Significance Index: -51.5100 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0745
Cell Significance Index: -46.5000 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0957
Cell Significance Index: -53.9700 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.1165
Cell Significance Index: -3.3400 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.1697
Cell Significance Index: -11.4100 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1816
Cell Significance Index: -18.5600 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.2069
Cell Significance Index: -43.5700 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.2425
Cell Significance Index: -12.6300 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.2534
Cell Significance Index: -36.8400 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.2694
Cell Significance Index: -77.5200 - Cell Name: peg cell (CL4033014)
Fold Change: -0.3800
Cell Significance Index: -8.7800 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.3862
Cell Significance Index: -13.5700 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.4154
Cell Significance Index: -47.5900 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.4555
Cell Significance Index: -20.1500 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.5250
Cell Significance Index: -13.8100 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.5430
Cell Significance Index: -18.8700 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.5540
Cell Significance Index: -14.2400 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.5625
Cell Significance Index: -11.9800 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.5672
Cell Significance Index: -59.0600 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.5911
Cell Significance Index: -67.4700 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.6238
Cell Significance Index: -23.6200 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.6534
Cell Significance Index: -14.1500 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.6545
Cell Significance Index: -8.9300 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.6871
Cell Significance Index: -11.5000 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.7349
Cell Significance Index: -58.2100 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.8372
Cell Significance Index: -16.3400 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.9111
Cell Significance Index: -19.0700 - Cell Name: cone retinal bipolar cell (CL0000752)
Fold Change: -1.0171
Cell Significance Index: -7.8400 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -1.0812
Cell Significance Index: -23.1100 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: -1.1703
Cell Significance Index: -21.6300 - Cell Name: cardiac muscle cell (CL0000746)
Fold Change: -1.2328
Cell Significance Index: -18.2000 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -1.2441
Cell Significance Index: -33.3400 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -1.2616
Cell Significance Index: -77.3500 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -1.2680
Cell Significance Index: -37.2400 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: -1.3775
Cell Significance Index: -17.0900 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -1.4118
Cell Significance Index: -16.8300 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -1.4169
Cell Significance Index: -40.4400 - Cell Name: pro-T cell (CL0000827)
Fold Change: -1.4307
Cell Significance Index: -36.5500 - Cell Name: endothelial cell of placenta (CL0009092)
Fold Change: -1.5012
Cell Significance Index: -9.0700 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -1.5629
Cell Significance Index: -51.1700 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -1.5698
Cell Significance Index: -41.9900 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -1.5730
Cell Significance Index: -14.4900 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -1.5828
Cell Significance Index: -50.4100 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -1.7137
Cell Significance Index: -86.6000
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 2198663365
Symbol: DDX6_HUMAN
Name: ATP-dependent RNA helicase p54
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 1579499
Title: Cloning, expression and localization of an RNA helicase gene from a human lymphoid cell line with chromosomal breakpoint 11q23.3.
PubMed ID: 1579499
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 1394235
Title: The RCK gene associated with t(11;14) translocation is distinct from the MLL/ALL-1 gene with t(4;11) and t(11;19) translocations.
PubMed ID: 1394235
PubMed ID: 16364915
Title: Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping.
PubMed ID: 16364915
PubMed ID: 16699599
Title: Human retroviral host restriction factors APOBEC3G and APOBEC3F localize to mRNA processing bodies.
PubMed ID: 16699599
PubMed ID: 17525332
Title: ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
PubMed ID: 17525332
PubMed ID: 20616046
Title: LIM-domain proteins, LIMD1, Ajuba, and WTIP are required for microRNA-mediated gene silencing.
PubMed ID: 20616046
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 22915799
Title: HIV-1 replication and APOBEC3 antiviral activity are not regulated by P bodies.
PubMed ID: 22915799
DOI: 10.1128/jvi.00595-12
PubMed ID: 23209657
Title: Ataxin-2-like is a regulator of stress granules and processing bodies.
PubMed ID: 23209657
PubMed ID: 23125361
Title: The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function.
PubMed ID: 23125361
DOI: 10.1093/nar/gks1032
PubMed ID: 26184334
Title: Comprehensive protein interactome analysis of a key RNA helicase: detection of novel stress granule proteins.
PubMed ID: 26184334
DOI: 10.3390/biom5031441
PubMed ID: 26027925
Title: The eIF4E-Binding protein 4E-T is a component of the mRNA decay machinery that bridges the 5' and 3' termini of target mRNAs.
PubMed ID: 26027925
PubMed ID: 25995375
Title: P-body assembly requires DDX6 repression complexes rather than decay or Ataxin2/2L complexes.
PubMed ID: 25995375
PubMed ID: 26098573
Title: A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy.
PubMed ID: 26098573
DOI: 10.1038/ncb3189
PubMed ID: 25944712
Title: N-terminome analysis of the human mitochondrial proteome.
PubMed ID: 25944712
PubMed ID: 27342281
Title: The DDX6-4E-T interaction mediates translational repression and P-body assembly.
PubMed ID: 27342281
DOI: 10.1093/nar/gkw565
PubMed ID: 28216671
Title: Dual mechanisms regulate the nucleocytoplasmic localization of human DDX6.
PubMed ID: 28216671
DOI: 10.1038/srep42853
PubMed ID: 30258011
Title: Rotavirus Induces Formation of Remodeled Stress Granules and P Bodies and Their Sequestration in Viroplasms To Promote Progeny Virus Production.
PubMed ID: 30258011
DOI: 10.1128/jvi.01363-18
PubMed ID: 31422817
Title: Rare de novo missense variants in RNA helicase DDX6 cause intellectual disability and dysmorphic features and lead to P-body defects and RNA dysregulation.
PubMed ID: 31422817
PubMed ID: 31439631
Title: Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
PubMed ID: 31439631
PubMed ID: 32354837
Title: 4E-T-bound mRNAs are stored in a silenced and deadenylated form.
PubMed ID: 32354837
PubMed ID: 14684915
Title: Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54.
PubMed ID: 14684915
PubMed ID: 19285948
Title: Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B.
PubMed ID: 19285948
PubMed ID: 26489469
Title: Structure of a human 4E-T/DDX6/CNOT1 complex reveals the different interplay of DDX6-binding proteins with the CCR4-NOT complex.
PubMed ID: 26489469
PubMed ID: 29510985
Title: Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes.
PubMed ID: 29510985
Sequence Information:
- Length: 483
- Mass: 54417
- Checksum: F802C642861793FB
- Sequence:
MSTARTENPV IMGLSSQNGQ LRGPVKPTGG PGGGGTQTQQ QMNQLKNTNT INNGTQQQAQ SMTTTIKPGD DWKKTLKLPP KDLRIKTSDV TSTKGNEFED YCLKRELLMG IFEMGWEKPS PIQEESIPIA LSGRDILARA KNGTGKSGAY LIPLLERLDL KKDNIQAMVI VPTRELALQV SQICIQVSKH MGGAKVMATT GGTNLRDDIM RLDDTVHVVI ATPGRILDLI KKGVAKVDHV QMIVLDEADK LLSQDFVQIM EDIILTLPKN RQILLYSATF PLSVQKFMNS HLQKPYEINL MEELTLKGVT QYYAYVTERQ KVHCLNTLFS RLQINQSIIF CNSSQRVELL AKKISQLGYS CFYIHAKMRQ EHRNRVFHDF RNGLCRNLVC TDLFTRGIDI QAVNVVINFD FPKLAETYLH RIGRSGRFGH LGLAINLITY DDRFNLKSIE EQLGTEIKPI PSNIDKSLYV AEYHSEPVED EKP
Genular Protein ID: 2970205627
Symbol: B2R858_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Sequence Information:
- Length: 472
- Mass: 53216
- Checksum: 83AC5228E102ED04
- Sequence:
MGLSSQNGQL RGPVKPTGGP GGGGTQTQQQ MNQLKNTNTI NNGTQQQAQS MTTTIKPGDD WKKTLKLPPK DLRIKTSDVT STKGNEFEDY CLKRELLMGI FEMGWEKPSP IQEESIPIAL SGRDILARAK NGTGKSGAYL IPLLERLDLK KDNIQAMVIV PTRELALQVS QICIQVSKHM GGAKVMATTG GTNLRDDIMR LDDTVHVVIA TPGRILDLIK KGVAKVDHVQ MIVLDEADKL LSQDFVQIME DIILTLPKNR QILLYSATFP LSVQKFMNSH LQKPYEINLM EELTLKGVTQ YYAYVTERQK VHCLNTLFSR LQINQSIIFC NSSQRVELLA KKISQLGYSC FYIHAKMRQE HRNRVFHDFR NGLCRNLVCT DLFTRGIDIQ AVNVVINFDF PKLAETYLHR IGRSGRFGHL GLAINLITYD DRFNLKSIEE QLGTEIKPIP SNIDKSLYVA EYHSEPVEDE KP
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.