Details for: VPS4A
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 178.4690
Cell Significance Index: -27.7600 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 118.6114
Cell Significance Index: -30.0900 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 69.7488
Cell Significance Index: -32.9300 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 62.2102
Cell Significance Index: -32.0000 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 49.0893
Cell Significance Index: -32.9400 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 26.4081
Cell Significance Index: -32.5600 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 9.4966
Cell Significance Index: -25.4400 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 8.4870
Cell Significance Index: -33.4900 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 7.7676
Cell Significance Index: -17.0000 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 2.2708
Cell Significance Index: 157.0400 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 1.8457
Cell Significance Index: 300.1900 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 1.6107
Cell Significance Index: 84.5700 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.1423
Cell Significance Index: 124.2500 - Cell Name: microcirculation associated smooth muscle cell (CL0008035)
Fold Change: 0.9738
Cell Significance Index: 8.1800 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.8821
Cell Significance Index: 24.0100 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 0.8573
Cell Significance Index: 246.6600 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.7374
Cell Significance Index: 34.3800 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.7039
Cell Significance Index: 45.4200 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.6965
Cell Significance Index: 139.7200 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.5769
Cell Significance Index: 79.2300 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.5608
Cell Significance Index: 101.1000 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: 0.5428
Cell Significance Index: 15.9400 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.5263
Cell Significance Index: 15.1700 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.5041
Cell Significance Index: 22.8500 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.4987
Cell Significance Index: 61.3200 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.4604
Cell Significance Index: 78.6200 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.4431
Cell Significance Index: 195.9000 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.4392
Cell Significance Index: 27.6800 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 0.4381
Cell Significance Index: 20.5900 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.4236
Cell Significance Index: 84.0700 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.4163
Cell Significance Index: 375.8500 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.3999
Cell Significance Index: 28.2800 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.3597
Cell Significance Index: 7.5300 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.3384
Cell Significance Index: 39.9100 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.3374
Cell Significance Index: 43.5900 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.3333
Cell Significance Index: 182.0300 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.3025
Cell Significance Index: 108.5100 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.2820
Cell Significance Index: 21.0200 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.2643
Cell Significance Index: 33.8900 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: 0.2463
Cell Significance Index: 8.5600 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 0.2380
Cell Significance Index: 14.6300 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.2369
Cell Significance Index: 12.3100 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: 0.2327
Cell Significance Index: 3.9000 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: 0.1389
Cell Significance Index: 1.5100 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1305
Cell Significance Index: 12.9100 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.1246
Cell Significance Index: 3.3400 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.1097
Cell Significance Index: 2.9300 - Cell Name: cone retinal bipolar cell (CL0000752)
Fold Change: 0.0960
Cell Significance Index: 0.7400 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.0616
Cell Significance Index: 11.7300 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0322
Cell Significance Index: 1.1300 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 0.0144
Cell Significance Index: 0.4600 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0107
Cell Significance Index: 20.0600 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 0.0045
Cell Significance Index: 0.1300 - Cell Name: granulosa cell (CL0000501)
Fold Change: 0.0004
Cell Significance Index: 0.0100 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0003
Cell Significance Index: -0.4100 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0021
Cell Significance Index: -3.8700 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0068
Cell Significance Index: -9.1900 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.0082
Cell Significance Index: -0.1400 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0116
Cell Significance Index: -7.2500 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0120
Cell Significance Index: -9.0900 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0145
Cell Significance Index: -10.7100 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0159
Cell Significance Index: -11.6800 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0231
Cell Significance Index: -14.6400 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.0247
Cell Significance Index: -0.6900 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0288
Cell Significance Index: -16.2600 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0338
Cell Significance Index: -2.5900 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0446
Cell Significance Index: -4.5600 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0464
Cell Significance Index: -21.0500 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0794
Cell Significance Index: -16.7300 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0828
Cell Significance Index: -12.0400 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.1217
Cell Significance Index: -8.1800 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.1382
Cell Significance Index: -3.5300 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1403
Cell Significance Index: -16.0700 - Cell Name: vascular lymphangioblast (CL0005022)
Fold Change: -0.1449
Cell Significance Index: -2.5600 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.1485
Cell Significance Index: -3.0800 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.1597
Cell Significance Index: -18.6100 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.1973
Cell Significance Index: -11.0700 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.2146
Cell Significance Index: -4.6500 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.2298
Cell Significance Index: -26.2300 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.2340
Cell Significance Index: -5.8500 - Cell Name: endothelial cell of placenta (CL0009092)
Fold Change: -0.2632
Cell Significance Index: -1.5900 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3031
Cell Significance Index: -31.5700 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.3111
Cell Significance Index: -2.8700 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.3179
Cell Significance Index: -14.0600 - Cell Name: paneth cell of colon (CL0009009)
Fold Change: -0.3190
Cell Significance Index: -4.7800 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.3201
Cell Significance Index: -25.3500 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.3276
Cell Significance Index: -4.4700 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -0.3461
Cell Significance Index: -8.3000 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.4059
Cell Significance Index: -15.3700 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.4506
Cell Significance Index: -4.6700 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.4552
Cell Significance Index: -12.1800 - Cell Name: peg cell (CL4033014)
Fold Change: -0.4867
Cell Significance Index: -11.2500 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.5089
Cell Significance Index: -31.2000 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: -0.5162
Cell Significance Index: -9.5400 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.5281
Cell Significance Index: -15.0700 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: -0.5333
Cell Significance Index: -6.6200 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.5583
Cell Significance Index: -11.8900 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.5973
Cell Significance Index: -7.1200 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.6466
Cell Significance Index: -22.6500 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.6659
Cell Significance Index: -14.5800
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3848136103
Symbol: VPS4A_HUMAN
Name: Protein SKD2
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11563910
Title: Mammalian cells express two VPS4 proteins both of which are involved in intracellular protein trafficking.
PubMed ID: 11563910
PubMed ID: 12594041
Title: Comparative sequence and expression analyses of four mammalian VPS4 genes.
PubMed ID: 12594041
PubMed ID: 10931946
Title: Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning.
PubMed ID: 10931946
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 10637304
Title: ATPase-defective mammalian VPS4 localizes to aberrant endosomes and impairs cholesterol trafficking.
PubMed ID: 10637304
DOI: 10.1091/mbc.11.1.227
PubMed ID: 11595185
Title: Tsg101 and the vacuolar protein sorting pathway are essential for HIV-1 budding.
PubMed ID: 11595185
PubMed ID: 11559748
Title: CHMP1 functions as a member of a newly defined family of vesicle trafficking proteins.
PubMed ID: 11559748
PubMed ID: 14505570
PubMed ID: 14519844
Title: Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins.
PubMed ID: 14519844
PubMed ID: 15075231
Title: ATPase-deficient hVPS4 impairs formation of internal endosomal vesicles and stabilizes bilayered clathrin coats on endosomal vacuoles.
PubMed ID: 15075231
DOI: 10.1242/jcs.00998
PubMed ID: 16193069
Title: Structural and mechanistic studies of VPS4 proteins.
PubMed ID: 16193069
PubMed ID: 17853893
Title: Human ESCRT and ALIX proteins interact with proteins of the midbody and function in cytokinesis.
PubMed ID: 17853893
PubMed ID: 18997780
Title: Structural basis for midbody targeting of spastin by the ESCRT-III protein CHMP1B.
PubMed ID: 18997780
DOI: 10.1038/nsmb.1512
PubMed ID: 19129480
PubMed ID: 19129479
Title: Biochemical analyses of human IST1 and its function in cytokinesis.
PubMed ID: 19129479
PubMed ID: 19608861
Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.
PubMed ID: 19608861
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 21543490
Title: Mechanism of inhibition of retrovirus release from cells by interferon-induced gene ISG15.
PubMed ID: 21543490
DOI: 10.1128/jvi.02610-10
PubMed ID: 22660413
Title: Syndecan-syntenin-ALIX regulates the biogenesis of exosomes.
PubMed ID: 22660413
DOI: 10.1038/ncb2502
PubMed ID: 24814515
Title: ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4.
PubMed ID: 24814515
DOI: 10.1038/ncb2959
PubMed ID: 16174732
Title: Structure and ESCRT-III protein interactions of the MIT domain of human VPS4A.
PubMed ID: 16174732
PubMed ID: 17928862
PubMed ID: 18606141
Title: Two distinct modes of ESCRT-III recognition are required for VPS4 functions in lysosomal protein targeting and HIV-1 budding.
PubMed ID: 18606141
PubMed ID: 25356899
Title: De novo mutations in moderate or severe intellectual disability.
PubMed ID: 25356899
PubMed ID: 33186545
Title: De Novo VPS4A mutations cause multisystem disease with abnormal neurodevelopment.
PubMed ID: 33186545
PubMed ID: 33186543
Title: VPS4A mutations in humans cause syndromic congenital dyserythropoietic anemia due to cytokinesis and trafficking defects.
PubMed ID: 33186543
PubMed ID: 33460484
Title: VPS4A mutation in syndromic congenital hemolytic anemia without obvious signs of dyserythropoiesis.
PubMed ID: 33460484
DOI: 10.1002/ajh.26099
Sequence Information:
- Length: 437
- Mass: 48898
- Checksum: C3CC556FB84F105C
- Sequence:
MTTSTLQKAI DLVTKATEED KAKNYEEALR LYQHAVEYFL HAIKYEAHSD KAKESIRAKC VQYLDRAEKL KDYLRSKEKH GKKPVKENQS EGKGSDSDSE GDNPEKKKLQ EQLMGAVVME KPNIRWNDVA GLEGAKEALK EAVILPIKFP HLFTGKRTPW RGILLFGPPG TGKSYLAKAV ATEANNSTFF SVSSSDLMSK WLGESEKLVK NLFELARQHK PSIIFIDEVD SLCGSRNENE SEAARRIKTE FLVQMQGVGN NNDGTLVLGA TNIPWVLDSA IRRRFEKRIY IPLPEEAARA QMFRLHLGST PHNLTDANIH ELARKTEGYS GADISIIVRD SLMQPVRKVQ SATHFKKVCG PSRTNPSMMI DDLLTPCSPG DPGAMEMTWM DVPGDKLLEP VVCMSDMLRS LATTRPTVNA DDLLKVKKFS EDFGQES
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.