Details for: GRIA1
Gene ID: 2890
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: GRIA1
Ensembl ID: ENSG00000155511
Description: glutamate ionotropic receptor AMPA type subunit 1
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 75.59rCSI 100%PRS 94.99
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CSI 70.87rCSI 84.66%PRS 94.26
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CSI 66.63rCSI 85.89%PRS 94.79
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CSI 64.89rCSI 80.73%PRS 93.29
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CSI 50.88rCSI 81.84%PRS 94.29
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CSI 49.33rCSI 82.8%PRS 94.45
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CSI 48.08rCSI 84.91%PRS 94.2
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CSI 41.71rCSI 96.28%PRS 94.64
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CSI 33.08rCSI 36.23%PRS 98.8
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CSI 32.85rCSI 71.26%PRS 92.16
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CSI 32.69rCSI 37.75%PRS 95.28
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CSI 31.66rCSI 64.24%PRS 90.63
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CSI 30.75rCSI 81.89%PRS 91.53
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CSI 30.57rCSI 73.11%PRS 93.25
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CSI 29.91rCSI 72.68%PRS 92.87
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CSI 28.83rCSI 36.99%PRS 97.06
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CSI 28.28rCSI 52.96%PRS 94.94
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CSI 28.02rCSI 87.65%PRS 94.99
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CSI 26.1rCSI 41.63%PRS 95.26
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CSI 25.69rCSI 51.59%PRS 96.33
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CSI 25.22rCSI 95.17%PRS 91.66
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CSI 24.61rCSI 76.91%PRS 94.52
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CSI 24.53rCSI 44.08%PRS 95.94
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CSI 24.5rCSI 80.51%PRS 92.48
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CSI 22.63rCSI 51.64%PRS 95.71
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CSI 21.19rCSI 43.54%PRS 91.89
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CSI 21.17rCSI 76.19%PRS 93.19
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CSI 20.79rCSI 19.35%PRS 98.93
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CSI 20.62rCSI 84.02%PRS 94.13
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CSI 20.4rCSI 68.36%PRS 91.6
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CSI 19.98rCSI 58.98%PRS 97.95
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CSI 19.05rCSI 55.2%PRS 94.67
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CSI 18.99rCSI 71.76%PRS 93.75
-
CSI 17.24rCSI 44.31%PRS 96.11
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CSI 16.44rCSI 24.43%PRS 97.17
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CSI 15.04rCSI 51.5%PRS 91.93
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CSI 13.69rCSI 52.12%PRS 95.24
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CSI 13.32rCSI 62.66%PRS 92.03
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CSI 13.21rCSI 37.55%PRS 96.54
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CSI 12.86rCSI 75.7%PRS 94.03
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CSI 12.69rCSI 22.49%PRS 81.48
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CSI 12.47rCSI 82.75%PRS 94.02
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CSI 12.43rCSI 55.54%PRS 90.13
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CSI 12.34rCSI 27.66%PRS 94.27
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CSI 12.06rCSI 38.6%PRS 97.66
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CSI 11.47rCSI 64.8%PRS 93.12
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CSI 11.27rCSI 19.49%PRS 96.41
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CSI 11.06rCSI 28.82%PRS 94.53
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CSI 10.42rCSI 74.47%PRS 92.76
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CSI 10.02rCSI 73.62%PRS 94.97
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CSI 9.9rCSI 43.57%PRS 92.51
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CSI 9.8rCSI 13.4%PRS 96.93
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CSI 9.74rCSI 66.27%PRS 93.46
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CSI 9.48rCSI 73.46%PRS 93.5
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CSI 9.19rCSI 79.15%PRS 94.6
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CSI 7.59rCSI 44.82%PRS 93.18
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CSI 7.27rCSI 12.75%PRS 96.66
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CSI 7.16rCSI 28%PRS 92.27
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CSI 6.11rCSI 11.11%PRS 95.31
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CSI 6.11rCSI 37.64%PRS 97.53
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CSI 5.76rCSI 6.98%PRS 86.58
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CSI 4.59rCSI 24.12%PRS 97.64
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CSI 4.07rCSI 30.59%PRS 91.93
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CSI 3.95rCSI 45.26%PRS 89.76
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CSI 3.92rCSI 34.54%PRS 91.47
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CSI 3.38rCSI 21.64%PRS 94.68
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CSI 3.1rCSI 74.2%PRS 92.21
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CSI 3.06rCSI 73.95%PRS 91.83
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CSI 2.52rCSI 21.2%PRS 90.29
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CSI 1.27rCSI 2.8%PRS 94.12
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 3604620142
Symbol: GRIA1_HUMAN
Name: AMPA-selective glutamate receptor 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 1652753
Title: Molecular cloning and chromosomal localization of one of the human glutamate receptor genes.
PubMed ID: 1652753
PubMed ID: 1320959
Title: The human glutamate receptor cDNA GluR1: cloning, sequencing, expression and localization to chromosome 5.
PubMed ID: 1320959
PubMed ID: 1311100
Title: Molecular cloning, chromosomal mapping, and functional expression of human brain glutamate receptors.
PubMed ID: 1311100
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15372022
Title: The DNA sequence and comparative analysis of human chromosome 5.
PubMed ID: 15372022
DOI: 10.1038/nature02919
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 21172611
Title: Hippocampal AMPA receptor gating controlled by both TARP and cornichon proteins.
PubMed ID: 21172611
PubMed ID: 20805473
Title: Functional comparison of the effects of TARPs and cornichons on AMPA receptor trafficking and gating.
PubMed ID: 20805473
PubMed ID: 23739980
Title: A eukaryotic specific transmembrane segment is required for tetramerization in AMPA receptors.
PubMed ID: 23739980
PubMed ID: 30135643
Title: Mechanisms of CPT1C-Dependent AMPAR Trafficking Enhancement.
PubMed ID: 30135643
PubMed ID: 23033978
Title: Diagnostic exome sequencing in persons with severe intellectual disability.
PubMed ID: 23033978
PubMed ID: 28628100
Title: Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.
PubMed ID: 28628100
DOI: 10.1038/nn.4589
PubMed ID: 35675825
Title: Identification and functional evaluation of GRIA1 missense and truncation variants in individuals with ID: An emerging neurodevelopmental syndrome.
PubMed ID: 35675825
Sequence Information:
- Length: 906
- Mass: 101506
- Checksum: 03EA1E026D0A9A2F
- Sequence:
MQHIFAFFCT GFLGAVVGAN FPNNIQIGGL FPNQQSQEHA AFRFALSQLT EPPKLLPQID IVNISDSFEM TYRFCSQFSK GVYAIFGFYE RRTVNMLTSF CGALHVCFIT PSFPVDTSNQ FVLQLRPELQ DALISIIDHY KWQKFVYIYD ADRGLSVLQK VLDTAAEKNW QVTAVNILTT TEEGYRMLFQ DLEKKKERLV VVDCESERLN AILGQIIKLE KNGIGYHYIL ANLGFMDIDL NKFKESGANV TGFQLVNYTD TIPAKIMQQW KNSDARDHTR VDWKRPKYTS ALTYDGVKVM AEAFQSLRRQ RIDISRRGNA GDCLANPAVP WGQGIDIQRA LQQVRFEGLT GNVQFNEKGR RTNYTLHVIE MKHDGIRKIG YWNEDDKFVP AATDAQAGGD NSSVQNRTYI VTTILEDPYV MLKKNANQFE GNDRYEGYCV ELAAEIAKHV GYSYRLEIVS DGKYGARDPD TKAWNGMVGE LVYGRADVAV APLTITLVRE EVIDFSKPFM SLGISIMIKK PQKSKPGVFS FLDPLAYEIW MCIVFAYIGV SVVLFLVSRF SPYEWHSEEF EEGRDQTTSD QSNEFGIFNS LWFSLGAFMQ QGCDISPRSL SGRIVGGVWW FFTLIIISSY TANLAAFLTV ERMVSPIESA EDLAKQTEIA YGTLEAGSTK EFFRRSKIAV FEKMWTYMKS AEPSVFVRTT EEGMIRVRKS KGKYAYLLES TMNEYIEQRK PCDTMKVGGN LDSKGYGIAT PKGSALRNPV NLAVLKLNEQ GLLDKLKNKW WYDKGECGSG GGDSKDKTSA LSLSNVAGVF YILIGGLGLA MLVALIEFCY KSRSESKRMK GFCLIPQQSI NEAIRTSTLP RNSGAGASSG GSGENGRVVS HDFPKSMQSI PCMSHSSGMP LGATGL
Genular Protein ID: 938772174
Symbol: Q59GL5_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Sequence Information:
- Length: 833
- Mass: 93291
- Checksum: BDBA6AF7FEC49566
- Sequence:
ICSQFSKGVY AIFGFYERRT VNMLTSFCGA LHVCFITPSF PVDTSNQFVL QLRPELQDAL ISIIDHYKWQ KFVYIYDADR GLSVLQKVLD TAAEKNWQVT AVNILTTTEE GYRMLFQDLE KKKERLVVVD CESERLNAIL GQIIKLEKNG IGYHYILANL GFMDIDLNKF KESGANVTGF QLVNYTDTIP AKIMQQWKNS DARDHTRVDW KRPKYTSALT YDGVKVMAEA FQSLRRQRID ISRRGNAGDC LANPAVPWGQ GIDIQRALQQ VRFEGLTGNV QFNEKGRRTN YTLHVIEMKH DGIRKIGYWN EDDKFVPAAT DAQAGGDNSS VQNRTYIVTT ILEDPYVMLK KNANQFEGND RYEGYCVELA AEIAKHVGYS YRLEIVSDGK YGARDPDTKA WNGMVGELVY GRADVAVAPL TITLVREEVI DFSKPFMSLG ISIMIKKPQK SKPGVFSFLD PLAYEIWMCI VFAYIGVSVV LFLVSRFSPY EWHSEEFEEG RDQTTSDQSN EFGIFNSLWF SLGAFMQQGC DISPRSLSGR IVGGVWWFFT LIIISSYTAN LAAFLTVERM VSPIESAEDL AKQTEIAYGT LEAGSTKEFF RRSKIAVFEK MWTYMKSAEP SVFVRTTEEG MIRVRKSKGK YAYLLESTMN EYIEQRKPCD TMKVGGNLDS KGYGIATPKG SALRGPVNLA VLKLSEQGVL DKLKSKWWYD KGECGSKDSG SKDKTSALSL SNVAGVFYIL IGGLGLAMLV ALIEFCYKSR SESKRMKGFC LIPQQSINEA IRTSTLPRNS GAGASSGGSG ENGRVVSHDF PKSMQSIPCM SHSSGMPLGA TGL