Details for: HMGA1

Gene ID: 3159

Symbol: HMGA1

Ensembl ID: ENSG00000137309

Description: high mobility group AT-hook 1

Associated with

Cells (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: erythroid progenitor cell (CL0000038)
    Fold Change: 4.52
    Marker Score: 4712
  • Cell Name: cord blood hematopoietic stem cell (CL2000095)
    Fold Change: 4.14
    Marker Score: 3124
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 3.77
    Marker Score: 9199
  • Cell Name: epithelial cell of urethra (CL1000296)
    Fold Change: 3.27
    Marker Score: 2575
  • Cell Name: germinal center B cell (CL0000844)
    Fold Change: 2.89
    Marker Score: 1757.5
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 2.83
    Marker Score: 8394
  • Cell Name: CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell (CL0000915)
    Fold Change: 2.77
    Marker Score: 3922
  • Cell Name: B-1 B cell (CL0000819)
    Fold Change: 2.75
    Marker Score: 4789
  • Cell Name: neural crest cell (CL0011012)
    Fold Change: 2.63
    Marker Score: 2806
  • Cell Name: migratory enteric neural crest cell (CL0002607)
    Fold Change: 2.53
    Marker Score: 2384.5
  • Cell Name: centroblast (CL0009112)
    Fold Change: 2.52
    Marker Score: 1243
  • Cell Name: fraction A pre-pro B cell (CL0002045)
    Fold Change: 2.52
    Marker Score: 2535
  • Cell Name: mammary gland epithelial cell (CL0002327)
    Fold Change: 2.46
    Marker Score: 875.5
  • Cell Name: fibroblast of connective tissue of nonglandular part of prostate (CL1000304)
    Fold Change: 2.45
    Marker Score: 2091.5
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 2.44
    Marker Score: 5157
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 2.44
    Marker Score: 9973
  • Cell Name: neuroblast (sensu Vertebrata) (CL0000031)
    Fold Change: 2.42
    Marker Score: 1519
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 2.4
    Marker Score: 82967
  • Cell Name: oogonial cell (CL0000024)
    Fold Change: 2.38
    Marker Score: 3425.5
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: 2.38
    Marker Score: 18553
  • Cell Name: epithelial cell of esophagus (CL0002252)
    Fold Change: 2.34
    Marker Score: 20169
  • Cell Name: CD34-positive, CD38-negative hematopoietic stem cell (CL0001024)
    Fold Change: 2.34
    Marker Score: 1693
  • Cell Name: oocyte (CL0000023)
    Fold Change: 2.33
    Marker Score: 576
  • Cell Name: fibroblast of connective tissue of glandular part of prostate (CL1000305)
    Fold Change: 2.28
    Marker Score: 950
  • Cell Name: foveolar cell of stomach (CL0002179)
    Fold Change: 2.28
    Marker Score: 14548
  • Cell Name: eurydendroid cell (CL0000253)
    Fold Change: 2.28
    Marker Score: 929.5
  • Cell Name: late pro-B cell (CL0002048)
    Fold Change: 2.24
    Marker Score: 2648.5
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 2.22
    Marker Score: 8739.5
  • Cell Name: large pre-B-II cell (CL0000957)
    Fold Change: 2.18
    Marker Score: 5922
  • Cell Name: early lymphoid progenitor (CL0000936)
    Fold Change: 2.16
    Marker Score: 1060
  • Cell Name: stem cell (CL0000034)
    Fold Change: 2.15
    Marker Score: 5114
  • Cell Name: fibroblast of breast (CL4006000)
    Fold Change: 2.14
    Marker Score: 1220
  • Cell Name: stem cell of epidermis (CL1000428)
    Fold Change: 2.12
    Marker Score: 717
  • Cell Name: peripheral nervous system neuron (CL2000032)
    Fold Change: 2.09
    Marker Score: 2347
  • Cell Name: mucous neck cell (CL0000651)
    Fold Change: 2.08
    Marker Score: 4727
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: 2.08
    Marker Score: 70818.5
  • Cell Name: erythroid progenitor cell, mammalian (CL0001066)
    Fold Change: 2.07
    Marker Score: 663
  • Cell Name: prostate gland microvascular endothelial cell (CL2000059)
    Fold Change: 2.05
    Marker Score: 795
  • Cell Name: proerythroblast (CL0000547)
    Fold Change: 2.01
    Marker Score: 1366.5
  • Cell Name: centrocyte (CL0009111)
    Fold Change: 1.99
    Marker Score: 473
  • Cell Name: respiratory epithelial cell (CL0002368)
    Fold Change: 1.99
    Marker Score: 1094
  • Cell Name: malignant cell (CL0001064)
    Fold Change: 1.99
    Marker Score: 26673.5
  • Cell Name: luminal epithelial cell of mammary gland (CL0002326)
    Fold Change: 1.97
    Marker Score: 3496.5
  • Cell Name: epithelial cell of nephron (CL1000449)
    Fold Change: 1.97
    Marker Score: 4107
  • Cell Name: squamous epithelial cell (CL0000076)
    Fold Change: 1.96
    Marker Score: 1332
  • Cell Name: fibroblast of connective tissue of prostate (CL1000299)
    Fold Change: 1.95
    Marker Score: 484.5
  • Cell Name: keratinocyte (CL0000312)
    Fold Change: 1.93
    Marker Score: 1615
  • Cell Name: prostate stromal cell (CL0002622)
    Fold Change: 1.93
    Marker Score: 484.5
  • Cell Name: enterocyte (CL0000584)
    Fold Change: 1.93
    Marker Score: 9247
  • Cell Name: basal cell of epithelium of trachea (CL1000348)
    Fold Change: 1.92
    Marker Score: 14307
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 1.9
    Marker Score: 1270
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 1.9
    Marker Score: 7332.5
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 1.9
    Marker Score: 2801
  • Cell Name: primary sensory neuron (sensu Teleostei) (CL0000531)
    Fold Change: 1.87
    Marker Score: 628
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 1.85
    Marker Score: 18746
  • Cell Name: intestinal crypt stem cell (CL0002250)
    Fold Change: 1.84
    Marker Score: 691
  • Cell Name: promyelocyte (CL0000836)
    Fold Change: 1.84
    Marker Score: 908
  • Cell Name: hematopoietic precursor cell (CL0008001)
    Fold Change: 1.81
    Marker Score: 635
  • Cell Name: fetal cardiomyocyte (CL0002495)
    Fold Change: 1.81
    Marker Score: 595
  • Cell Name: inhibitory motor neuron (CL0008015)
    Fold Change: 1.79
    Marker Score: 845
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 1.78
    Marker Score: 1870
  • Cell Name: motor neuron (CL0000100)
    Fold Change: 1.75
    Marker Score: 1041
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: 1.72
    Marker Score: 947
  • Cell Name: secretory cell (CL0000151)
    Fold Change: 1.7
    Marker Score: 3110
  • Cell Name: male germ cell (CL0000015)
    Fold Change: 1.7
    Marker Score: 489
  • Cell Name: nephron tubule epithelial cell (CL1000494)
    Fold Change: 1.68
    Marker Score: 395
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 1.67
    Marker Score: 10669
  • Cell Name: primitive red blood cell (CL0002355)
    Fold Change: 1.64
    Marker Score: 1231.5
  • Cell Name: Unknown (CL0000548)
    Fold Change: 1.63
    Marker Score: 1188
  • Cell Name: luminal cell of prostate epithelium (CL0002340)
    Fold Change: 1.63
    Marker Score: 947
  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 1.6
    Marker Score: 512
  • Cell Name: primordial germ cell (CL0000670)
    Fold Change: 1.59
    Marker Score: 1998
  • Cell Name: mesodermal cell (CL0000222)
    Fold Change: 1.59
    Marker Score: 20914.5
  • Cell Name: GABAergic amacrine cell (CL4030027)
    Fold Change: 1.58
    Marker Score: 3206
  • Cell Name: intestine goblet cell (CL0019031)
    Fold Change: 1.57
    Marker Score: 1501
  • Cell Name: enteric smooth muscle cell (CL0002504)
    Fold Change: 1.55
    Marker Score: 3659
  • Cell Name: mature T cell (CL0002419)
    Fold Change: 1.54
    Marker Score: 15300.5
  • Cell Name: B-1b B cell (CL0000821)
    Fold Change: 1.54
    Marker Score: 354
  • Cell Name: enteric neuron (CL0007011)
    Fold Change: 1.52
    Marker Score: 806.5
  • Cell Name: hematopoietic cell (CL0000988)
    Fold Change: 1.51
    Marker Score: 1005
  • Cell Name: osteoclast (CL0000092)
    Fold Change: 1.51
    Marker Score: 751
  • Cell Name: myoepithelial cell of mammary gland (CL0002324)
    Fold Change: 1.51
    Marker Score: 7400.5
  • Cell Name: memory B cell (CL0000787)
    Fold Change: 1.5
    Marker Score: 1132
  • Cell Name: epithelial cell of stratum germinativum of esophagus (CL1000447)
    Fold Change: 1.48
    Marker Score: 358
  • Cell Name: kidney collecting duct cell (CL1001225)
    Fold Change: 1.45
    Marker Score: 285
  • Cell Name: plasmablast (CL0000980)
    Fold Change: 1.45
    Marker Score: 1931
  • Cell Name: type EC enteroendocrine cell (CL0000577)
    Fold Change: 1.45
    Marker Score: 1365
  • Cell Name: erythroblast (CL0000765)
    Fold Change: 1.44
    Marker Score: 901.5
  • Cell Name: colon epithelial cell (CL0011108)
    Fold Change: 1.44
    Marker Score: 4519
  • Cell Name: type G enteroendocrine cell (CL0000508)
    Fold Change: 1.43
    Marker Score: 493
  • Cell Name: myeloid leukocyte (CL0000766)
    Fold Change: 1.42
    Marker Score: 1718
  • Cell Name: pro-B cell (CL0000826)
    Fold Change: 1.42
    Marker Score: 1372
  • Cell Name: respiratory goblet cell (CL0002370)
    Fold Change: 1.42
    Marker Score: 409
  • Cell Name: naive B cell (CL0000788)
    Fold Change: 1.41
    Marker Score: 1262
  • Cell Name: conventional dendritic cell (CL0000990)
    Fold Change: 1.41
    Marker Score: 972
  • Cell Name: CD1c-positive myeloid dendritic cell (CL0002399)
    Fold Change: 1.4
    Marker Score: 3630
  • Cell Name: taste receptor cell (CL0000209)
    Fold Change: 1.39
    Marker Score: 1203
  • Cell Name: DN3 thymocyte (CL0000807)
    Fold Change: 1.38
    Marker Score: 691.5
  • Cell Name: medullary thymic epithelial cell (CL0002365)
    Fold Change: 1.37
    Marker Score: 2250
  • Cell Name: dendritic cell, human (CL0001056)
    Fold Change: 1.37
    Marker Score: 1396

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Other Information

**Key characteristics:** * HMGA1 is a member of the high mobility group of transcription factors. * It is a nuclear protein that is found in both mammals and plants. * It is known to be involved in a variety of cellular processes, including cell cycle regulation, differentiation, and apoptosis. **Pathways and functions:** * HMGA1 is involved in the regulation of the early phase of the HIV life cycle. * It is expressed in high levels in cells that are early in the HIV infection process, and it is required for the formation of new viral particles. * HMGA1 is also involved in the formation of senescence-associated heterochromatin foci (sahf), which are small, condensed regions of DNA that are found in cells that are in a state of cellular senescence. * These foci are thought to play a role in maintaining cellular identity and preventing cancer. **Clinical significance:** * Mutations in HMGA1 have been linked to the development of several human cancers, including leukemia and prostate cancer. * Targeting HMGA1 has been explored as a therapeutic strategy for these cancers. **Additional information:** * HMGA1 is a highly conserved protein that is found in organisms from yeast to humans. * It is a ubiquitin-dependent protein that is degraded by the proteasome. * It is a member of the HMGA family of transcription factors, which are characterized by their ability to bind to DNA and regulate gene expression.

Genular Protein ID: 385002873

Symbol: HMGA1_HUMAN

Name: High mobility group protein HMG-I/HMG-Y

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 2505228

Title: Cloning of cDNAs coding for human HMG I and HMG Y proteins: both are capable of binding to the octamer sequence motif.

PubMed ID: 2505228

DOI: 10.1093/nar/17.15.5947

PubMed ID: 2701943

Title: Alternative processing of mRNAs encoding mammalian chromosomal high-mobility-group proteins HMG-I and HMG-Y.

PubMed ID: 2701943

DOI: 10.1128/mcb.9.5.2114-2123.1989

PubMed ID: 8414980

Title: Organization, inducible-expression and chromosome localization of the human HMG-I(Y) nonhistone protein gene.

PubMed ID: 8414980

DOI: 10.1093/nar/21.18.4259

PubMed ID: 10428834

Title: Retinoid-dependent recruitment of a histone H1 displacement activity by retinoic acid receptor.

PubMed ID: 10428834

DOI: 10.1074/jbc.274.32.22563

PubMed ID: 14574404

Title: The DNA sequence and analysis of human chromosome 6.

PubMed ID: 14574404

DOI: 10.1038/nature02055

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 3619901

Title: The human chromosomal protein HMG I contains two identical palindrome amino acid sequences.

PubMed ID: 3619901

DOI: 10.1016/0006-291x(87)90589-4

PubMed ID: 2920035

Title: The amino acid sequence of the chromosomal protein HMG-Y, its relation to HMG-I and possible domains for the preferential binding of the proteins to stretches of A-T base pairs.

PubMed ID: 2920035

DOI: 10.1016/0006-291x(89)92770-8

PubMed ID: 1692833

Title: The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure.

PubMed ID: 1692833

DOI: 10.1016/s0021-9258(19)38926-4

PubMed ID: 11978964

Title: Intragenic breakpoint within RAD51L1 in a t(6;14)(p21.3;q24) of a pulmonary chondroid hamartoma.

PubMed ID: 11978964

DOI: 10.1159/000057011

PubMed ID: 12653562

Title: During apoptosis of tumor cells HMGA1a protein undergoes methylation: identification of the modification site by mass spectrometry.

PubMed ID: 12653562

DOI: 10.1021/bi027338l

PubMed ID: 16157300

Title: Protein arginine methyltransferase 6 specifically methylates the nonhistone chromatin protein HMGA1a.

PubMed ID: 16157300

DOI: 10.1016/j.bbrc.2005.08.179

PubMed ID: 15835918

Title: Tandem mass spectrometry for the examination of the posttranslational modifications of high-mobility group A1 proteins: symmetric and asymmetric dimethylation of Arg25 in HMGA1a protein.

PubMed ID: 15835918

DOI: 10.1021/bi0475525

PubMed ID: 16159886

Title: Dynamics of human protein arginine methyltransferase 1(PRMT1) in vivo.

PubMed ID: 16159886

DOI: 10.1074/jbc.m502458200

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 17924679

Title: Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.

PubMed ID: 17924679

DOI: 10.1021/pr070152u

PubMed ID: 17960875

Title: Homeodomain-interacting protein kinase-2 (HIPK2) phosphorylates HMGA1a at Ser-35, Thr-52, and Thr-77 and modulates its DNA binding affinity.

PubMed ID: 17960875

DOI: 10.1021/pr700571d

PubMed ID: 17525332

Title: ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.

PubMed ID: 17525332

DOI: 10.1126/science.1140321

PubMed ID: 19367720

Title: Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment.

PubMed ID: 19367720

DOI: 10.1021/pr800500r

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 18318008

Title: Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography.

PubMed ID: 18318008

DOI: 10.1002/pmic.200700884

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 28190768

Title: Serine ADP-ribosylation depends on HPF1.

PubMed ID: 28190768

DOI: 10.1016/j.molcel.2017.01.003

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

DOI: 10.1038/nsmb.3366

PubMed ID: 9253416

Title: The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif.

PubMed ID: 9253416

DOI: 10.1038/nsb0897-657

Sequence Information:

  • Length: 107
  • Mass: 11676
  • Checksum: E9C4E3F2200914B8
  • Sequence:
  • MSESSSKSSQ PLASKQEKDG TEKRGRGRPR KQPPVSPGTA LVGSQKEPSE VPTPKRPRGR 
    PKGSKNKGAA KTRKTTTTPG RKPRGRPKKL EKEEEEGISQ ESSEEEQ

Genular Protein ID: 194026575

Symbol: A0A994J434_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 14574404

Title: The DNA sequence and analysis of human chromosome 6.

PubMed ID: 14574404

DOI: 10.1038/nature02055

Sequence Information:

  • Length: 106
  • Mass: 11548
  • Checksum: E750213969E9B65F
  • Sequence:
  • MSESSSKSSQ PLASKQEKDG TEKRGRGRPR KQPPVSPGTA LVGSQEPSEV PTPKRPRGRP 
    KGSKNKGAAK TRKTTTTPGR KPRGRPKKLE KEEEEGISQE SSEEEQ

Genular Protein ID: 1389318697

Symbol: Q5T6U8_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

  • Length: 96
  • Mass: 10679
  • Checksum: B82DCAA29E6D18FD
  • Sequence:
  • MSESSSKSSQ PLASKQEKDG TEKRGRGRPR KQPPKEPSEV PTPKRPRGRP KGSKNKGAAK 
    TRKTTTTPGR KPRGRPKKLE KEEEEGISQE SSEEEQ

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. For the full schema, download it here.