Details for: LPP

Gene ID: 4026

Symbol: LPP

Ensembl ID: ENSG00000145012

Description: LIM domain containing preferred translocation partner in lipoma

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 789.0310
    Cell Significance Index: -122.7300
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 477.4420
    Cell Significance Index: -121.1000
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 256.9459
    Cell Significance Index: -121.3100
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 252.4017
    Cell Significance Index: -102.5400
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 228.2336
    Cell Significance Index: -117.4000
  • Cell Name: ileal goblet cell (CL1000326)
    Fold Change: 183.2428
    Cell Significance Index: -122.9600
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 99.6548
    Cell Significance Index: -122.8700
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 43.5148
    Cell Significance Index: -116.5700
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 39.3679
    Cell Significance Index: -86.1600
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 34.4202
    Cell Significance Index: -105.7200
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 31.1451
    Cell Significance Index: -122.9000
  • Cell Name: skeletal muscle fibroblast (CL0011027)
    Fold Change: 13.9679
    Cell Significance Index: 94.6400
  • Cell Name: basal epithelial cell of prostatic duct (CL0002236)
    Fold Change: 8.4806
    Cell Significance Index: 75.2800
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: 8.3603
    Cell Significance Index: 163.1700
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: 6.8861
    Cell Significance Index: 528.4300
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: 6.4097
    Cell Significance Index: 164.7600
  • Cell Name: type I muscle cell (CL0002211)
    Fold Change: 5.5284
    Cell Significance Index: 134.8900
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 5.3513
    Cell Significance Index: 149.5500
  • Cell Name: epithelial cell of prostate (CL0002231)
    Fold Change: 5.0311
    Cell Significance Index: 31.0400
  • Cell Name: centrilobular region hepatocyte (CL0019029)
    Fold Change: 4.9849
    Cell Significance Index: 83.9700
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 4.2871
    Cell Significance Index: 850.7900
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 3.7382
    Cell Significance Index: 607.9800
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: 3.5231
    Cell Significance Index: 1599.0100
  • Cell Name: leptomeningeal cell (CL0000708)
    Fold Change: 2.8117
    Cell Significance Index: 60.1000
  • Cell Name: cardiac endothelial cell (CL0010008)
    Fold Change: 2.4975
    Cell Significance Index: 35.9200
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: 2.4928
    Cell Significance Index: 259.5600
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 2.2384
    Cell Significance Index: 243.4700
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 2.1324
    Cell Significance Index: 262.2000
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 2.0015
    Cell Significance Index: 112.3200
  • Cell Name: cardiac muscle cell (CL0000746)
    Fold Change: 1.9995
    Cell Significance Index: 29.5200
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 1.9766
    Cell Significance Index: 356.3200
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 1.8699
    Cell Significance Index: 220.5200
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 1.7581
    Cell Significance Index: 352.6700
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 1.7557
    Cell Significance Index: 629.7600
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 1.2918
    Cell Significance Index: 177.4000
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 1.2359
    Cell Significance Index: 2326.9900
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 1.1676
    Cell Significance Index: 54.8800
  • Cell Name: type II muscle cell (CL0002212)
    Fold Change: 1.1174
    Cell Significance Index: 18.0300
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 1.1111
    Cell Significance Index: 768.4800
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: 1.0552
    Cell Significance Index: 670.1900
  • Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
    Fold Change: 1.0399
    Cell Significance Index: 6.4000
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.9873
    Cell Significance Index: 21.3900
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.8975
    Cell Significance Index: 490.1600
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.8745
    Cell Significance Index: 39.6400
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.8585
    Cell Significance Index: 775.2000
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.8366
    Cell Significance Index: 24.1100
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.7383
    Cell Significance Index: 326.4100
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.7095
    Cell Significance Index: 1092.2900
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: 0.5594
    Cell Significance Index: 760.6900
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: 0.4786
    Cell Significance Index: 882.6600
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: 0.4091
    Cell Significance Index: 7.0100
  • Cell Name: fibroblast of cardiac tissue (CL0002548)
    Fold Change: 0.3851
    Cell Significance Index: 5.5300
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.3296
    Cell Significance Index: 42.2500
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: 0.1933
    Cell Significance Index: 11.8800
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.0552
    Cell Significance Index: 1.9400
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.0017
    Cell Significance Index: 0.2900
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0442
    Cell Significance Index: -32.7400
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.0560
    Cell Significance Index: -4.1700
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0738
    Cell Significance Index: -54.0800
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: -0.0816
    Cell Significance Index: -15.5400
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0948
    Cell Significance Index: -59.2200
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.1169
    Cell Significance Index: -88.5200
  • Cell Name: hippocampal astrocyte (CL0002604)
    Fold Change: -0.1323
    Cell Significance Index: -1.8500
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: -0.1353
    Cell Significance Index: -7.0300
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: -0.1660
    Cell Significance Index: -11.7400
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: -0.1773
    Cell Significance Index: -17.5400
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.1795
    Cell Significance Index: -101.2100
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.2301
    Cell Significance Index: -10.7300
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.2651
    Cell Significance Index: -34.2600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.2717
    Cell Significance Index: -27.7600
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: -0.3127
    Cell Significance Index: -8.3500
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.3145
    Cell Significance Index: -45.7100
  • Cell Name: periportal region hepatocyte (CL0019026)
    Fold Change: -0.3354
    Cell Significance Index: -4.9500
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.3657
    Cell Significance Index: -77.0200
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: -0.3692
    Cell Significance Index: -3.4000
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.3751
    Cell Significance Index: -107.9200
  • Cell Name: adipocyte of breast (CL0002617)
    Fold Change: -0.5162
    Cell Significance Index: -6.5000
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.5601
    Cell Significance Index: -65.2700
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.6260
    Cell Significance Index: -17.0400
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: -0.6450
    Cell Significance Index: -5.2600
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.6745
    Cell Significance Index: -77.2800
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: -0.6916
    Cell Significance Index: -44.6200
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.7249
    Cell Significance Index: -82.7500
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -0.7655
    Cell Significance Index: -6.4300
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: -0.7893
    Cell Significance Index: -21.1500
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -1.0133
    Cell Significance Index: -21.5800
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -1.0280
    Cell Significance Index: -69.1200
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -1.3139
    Cell Significance Index: -21.9900
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -1.3273
    Cell Significance Index: -105.1200
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -1.4818
    Cell Significance Index: -37.0400
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -1.5075
    Cell Significance Index: -39.6400
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -1.6009
    Cell Significance Index: -45.8900
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -1.6026
    Cell Significance Index: -51.3300
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -1.6802
    Cell Significance Index: -103.0100
  • Cell Name: OFF midget ganglion cell (CL4033047)
    Fold Change: -1.7194
    Cell Significance Index: -21.4400
  • Cell Name: perivascular cell (CL4033054)
    Fold Change: -1.7348
    Cell Significance Index: -8.0100
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -1.7365
    Cell Significance Index: -90.4500
  • Cell Name: regular ventricular cardiac myocyte (CL0002131)
    Fold Change: -1.7941
    Cell Significance Index: -23.0100
  • Cell Name: corneal endothelial cell (CL0000132)
    Fold Change: -1.8010
    Cell Significance Index: -27.4000
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -1.8380
    Cell Significance Index: -81.3000

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** The LPP gene is characterized by its unique LIM domain, which is a conserved structural motif involved in protein-protein interactions. This domain is essential for the gene's function, as it enables the protein to interact with other molecules and regulate cellular processes. The LPP gene is specifically expressed in various cell types, including contractile cells, skeletal muscle fibroblasts, and immune cells such as microglial cells and astrocytes. Its expression is also observed in tissues like the liver, heart, and prostate. **Pathways and Functions:** The LPP gene is involved in various cellular pathways, including cell-cell adhesion, cytoskeleton organization, and stress fiber formation. These pathways are crucial for maintaining cellular integrity and function, particularly in muscle cells and immune cells. The LPP protein interacts with other molecules to regulate these processes, including the cytoskeleton, focal adhesion, and metal ion binding. Its involvement in these pathways suggests that LPP plays a critical role in maintaining cellular homeostasis. **Clinical Significance:** The LPP gene's association with lipoma has significant clinical implications. Lipomas are benign tumors that can occur in various tissues, including muscle, fat, and connective tissue. While they are generally not cancerous, their presence can be a concern, particularly if they are large or recurring. The LPP gene's involvement in lipoma formation suggests that it may be a key player in the development of these tumors. Further research is needed to understand the mechanisms underlying LPP's role in lipoma formation and to explore potential therapeutic strategies for treating this condition. In addition to its association with lipoma, the LPP gene's expression in various cell types and tissues suggests that it may play a broader role in human biology. Its involvement in cellular pathways such as cell-cell adhesion and cytoskeleton organization implies that LPP may be involved in the regulation of cellular behavior, including migration, proliferation, and differentiation. Further research is needed to elucidate the full range of LPP's functions and its implications for human health. **Conclusion:** The LPP gene is a fascinating example of the complex interplay between gene expression, cellular biology, and disease. Its unique LIM domain and association with lipoma have significant clinical implications, highlighting the need for further research into the mechanisms underlying LPP's role in lipoma formation. As an immunologist, it is essential to continue exploring the functions and implications of the LPP gene to gain a deeper understanding of human biology and to develop new therapeutic strategies for treating diseases such as lipoma.

Genular Protein ID: 3033330641

Symbol: LPP_HUMAN

Name: Lipoma-preferred partner

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8812423

Title: LPP, the preferred fusion partner gene of HMGIC in lipomas, is a novel member of the LIM protein gene family.

PubMed ID: 8812423

DOI: 10.1006/geno.1996.0432

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 12063392

Title: A novel LPP fusion gene indicates the crucial role of truncated LPP proteins in lipomas and pulmonary chondroid hamartomas.

PubMed ID: 12063392

DOI: 10.1159/000059338

PubMed ID: 9772904

Title: Expression of reciprocal fusion transcripts of the HMGIC and LPP genes in parosteal lipoma.

PubMed ID: 9772904

DOI: 10.1016/s0165-4608(98)00038-7

PubMed ID: 11066083

Title: An identical HMGIC-LPP fusion transcript is consistently expressed in pulmonary chondroid hamartomas with t(3;12)(q27-28;q14-15).

PubMed ID: 11066083

DOI: 10.1002/1098-2264(2000)9999:9999<1::aid-gcc1043>3.3.co;2-e

PubMed ID: 10637295

Title: LPP, an actin cytoskeleton protein related to zyxin, harbors a nuclear export signal and transcriptional activation capacity.

PubMed ID: 10637295

DOI: 10.1091/mbc.11.1.117

PubMed ID: 11433529

Title: Human LPP gene is fused to MLL in a secondary acute leukemia with a t(3;11) (q28;q23).

PubMed ID: 11433529

DOI: 10.1002/gcc.1157

PubMed ID: 12441356

Title: The focal adhesion and nuclear targeting capacity of the LIM-containing lipoma-preferred partner (LPP) protein.

PubMed ID: 12441356

DOI: 10.1074/jbc.m206106200

PubMed ID: 12615977

Title: The lipoma preferred partner LPP interacts with alpha-actinin.

PubMed ID: 12615977

DOI: 10.1242/jcs.00309

PubMed ID: 12522270

Title: Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry.

PubMed ID: 12522270

DOI: 10.1073/pnas.2436191100

PubMed ID: 15144186

Title: Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry.

PubMed ID: 15144186

DOI: 10.1021/ac035352d

PubMed ID: 15649318

Title: The tumor suppressor Scrib interacts with the zyxin-related protein LPP, which shuttles between cell adhesion sites and the nucleus.

PubMed ID: 15649318

DOI: 10.1186/1471-2121-6-1

PubMed ID: 15592455

Title: Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.

PubMed ID: 15592455

DOI: 10.1038/nbt1046

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25114211

Title: Mapping of SUMO sites and analysis of SUMOylation changes induced by external stimuli.

PubMed ID: 25114211

DOI: 10.1073/pnas.1413825111

Sequence Information:

  • Length: 612
  • Mass: 65746
  • Checksum: 439CE0101FDE4DDD
  • Sequence:
  • MSHPSWLPPK STGEPLGHVP ARMETTHSFG NPSISVSTQQ PPKKFAPVVA PKPKYNPYKQ 
    PGGEGDFLPP PPPPLDDSSA LPSISGNFPP PPPLDEEAFK VQGNPGGKTL EERRSSLDAE 
    IDSLTSILAD LECSSPYKPR PPQSSTGSTA SPPVSTPVTG HKRMVIPNQP PLTATKKSTL 
    KPQPAPQAGP IPVAPIGTLK PQPQPVPASY TTASTSSRPT FNVQVKSAQP SPHYMAAPSS 
    GQIYGSGPQG YNTQPVPVSG QCPPPSTRGG MDYAYIPPPG LQPEPGYGYA PNQGRYYEGY 
    YAAGPGYGGR NDSDPTYGQQ GHPNTWKREP GYTPPGAGNQ NPPGMYPVTG PKKTYITDPV 
    SAPCAPPLQP KGGHSGQLGP SSVAPSFRPE DELEHLTKKM LYDMENPPAD EYFGRCARCG 
    ENVVGEGTGC TAMDQVFHVD CFTCIICNNK LRGQPFYAVE KKAYCEPCYI NTLEQCNVCS 
    KPIMERILRA TGKAYHPHCF TCVMCHRSLD GIPFTVDAGG LIHCIEDFHK KFAPRCSVCK 
    EPIMPAPGQE ETVRIVALDR DFHVHCYRCE DCGGLLSEGD NQGCYPLDGH ILCKTCNSAR 
    IRVLTAKAST DL

Genular Protein ID: 2672100334

Symbol: B7Z8W0_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 465
  • Mass: 50277
  • Checksum: 4384BE516BBFC6C3
  • Sequence:
  • MSHPSWLPPK STGEPLGHVP ARMETTHSFG NPSISVSTQQ PPKKFAPVVA PKPKYNPYKQ 
    PGGEGDFLPP PPPPLDDSSA LPSISGNFPP PPPLDEEAFK VQGNPGGKTL EERRSSLDAE 
    IDSLTSILAD LECSSPYKPR PPQSSTGSTA SPPVSTPVTG HKRMVIPNQP PLTATKKSTL 
    KPQPAPQAGP IPVAPIGTLK PQPQPVPASY TTASTSSRPT FNVQGGHSGQ LGPSSVAPSF 
    RPEDELEHLT KKMLYDMENP PADEYFGRCA RCGENVVGEG TGCTAMDQVF HVDCFTCIIC 
    NNKLRGQPFY AVEKKAYCEP CYINTLEQCN VCSKPIMERI LRATGKAYHP HCFTCVMCHR 
    SLDGIPFTVD AGGLIHCIED FHKKFAPRCS VCKEPIMPAP GQEETVRIVA LDRDFHVHCY 
    RCEDCGGLLS EGDNQGCYPL DGHILCKTCN SARIRVLTAK ASTDL

Genular Protein ID: 1049572698

Symbol: B7ZLW0_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

  • Length: 612
  • Mass: 65774
  • Checksum: 439CE51A96CE4DDD
  • Sequence:
  • MSHPSWLPPK STGEPLGHVP ARMETTHSFG NPSISVSTQQ PPKKFAPVVA PKPKYNPYKQ 
    PGGEGDFLPP PPPPLDDSSA LPSISGNFPP PPPLDEEVFK VQGNPGGKTL EERRSSLDAE 
    IDSLTSILAD LECSSPYKPR PPQSSTGSTA SPPVSTPVTG HKRMVIPNQP PLTATKKSTL 
    KPQPAPQAGP IPVAPIGTLK PQPQPVPASY TTASTSSRPT FNVQVKSAQP SPHYMAAPSS 
    GQIYGSGPQG YNTQPVPVSG QCPPPSTRGG MDYAYIPPPG LQPEPGYGYA PNQGRYYEGY 
    YAAGPGYGGR NDSDPTYGQQ GHPNTWKREP GYTPPGAGNQ NPPGMYPVTG PKKTYITDPV 
    SAPCAPPLQP KGGHSGQLGP SSVAPSFRPE DELEHLTKKM LYDMENPPAD EYFGRCARCG 
    ENVVGEGTGC TAMDQVFHVD CFTCIICNNK LRGQPFYAVE KKAYCEPCYI NTLEQCNVCS 
    KPIMERILRA TGKAYHPHCF TCVMCHRSLD GIPFTVDAGG LIHCIEDFHK KFAPRCSVCK 
    EPIMPAPGQE ETVRIVALDR DFHVHCYRCE DCGGLLSEGD NQGCYPLDGH ILCKTCNSAR 
    IRVLTAKAST DL

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.