Details for: MTHFD1
Gene ID: 4522
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: MTHFD1
Ensembl ID: ENSG00000100714
Description: methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 9.18rCSI 23.94%PRS 87.37
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CSI 7.1rCSI 12.45%PRS 88.07
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CSI 7.08rCSI 5.73%PRS 92.31
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CSI 5.85rCSI 10.47%PRS 89.92
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CSI 5.21rCSI 11.91%PRS 92.26
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CSI 4.97rCSI 11.15%PRS 79.63
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CSI 4.41rCSI 16.51%PRS 87.31
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CSI 3.8rCSI 8.92%PRS 89
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CSI 3.13rCSI 2.47%PRS 84.88
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CSI 3.06rCSI 4.42%PRS 93.13
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CSI 3.03rCSI 2.24%PRS 88.03
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CSI 3rCSI 2.43%PRS 90.67
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CSI 2.97rCSI 3.26%PRS 92.8
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CSI 2.87rCSI 4.71%PRS 84.91
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CSI 2.81rCSI 3.98%PRS 89.31
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CSI 2.8rCSI 1.86%PRS 92.67
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CSI 2.67rCSI 2.32%PRS 93.26
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CSI 2.54rCSI 2.45%PRS 87.49
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CSI 2.48rCSI 2.59%PRS 89.16
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CSI 2.47rCSI 1.94%PRS 93.33
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CSI 2.45rCSI 2.21%PRS 90.09
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CSI 2.35rCSI 3.02%PRS 83.83
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CSI 2.31rCSI 2.76%PRS 79.27
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CSI 2.27rCSI 3.51%PRS 89.53
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CSI 2.26rCSI 2.08%PRS 92.31
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CSI 2.25rCSI 8.77%PRS 88.24
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CSI 2.2rCSI 5.03%PRS 85.33
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CSI 2.19rCSI 3.36%PRS 80
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CSI 2.1rCSI 2.7%PRS 80.35
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CSI 2.01rCSI 3.77%PRS 83.56
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CSI 1.97rCSI 2.32%PRS 91.23
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CSI 1.95rCSI 2.71%PRS 89.8
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CSI 1.88rCSI 11.76%PRS 85.54
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CSI 1.87rCSI 2.32%PRS 77.05
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CSI 1.82rCSI 2.34%PRS 87.78
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CSI 1.81rCSI 43.22%PRS 77.01
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CSI 1.77rCSI 42.67%PRS 77.15
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CSI 1.76rCSI 2.03%PRS 84.27
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CSI 1.67rCSI 2.96%PRS 78.66
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CSI 1.46rCSI 2.35%PRS 80.14
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CSI 1.44rCSI 2.3%PRS 84.27
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CSI 1.38rCSI 2.32%PRS 79.24
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CSI 1.33rCSI 5.83%PRS 94.23
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CSI 1.31rCSI 1.92%PRS 87.27
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CSI 1.29rCSI 7.42%PRS 93.08
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CSI 1.19rCSI 1.71%PRS 83.91
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CSI 1.16rCSI 3.12%PRS 93.15
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CSI 1.11rCSI 3.16%PRS 91.25
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CSI 1.04rCSI 6.66%PRS 93.54
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CSI 0.9rCSI 2.39%PRS 92.03
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CSI 0.82rCSI 2%PRS 77.08
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CSI 0.82rCSI 1.8%PRS 81.58
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CSI 0.79rCSI 4.25%PRS 92.61
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CSI 0.77rCSI 2.93%PRS 79.43
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CSI 0.71rCSI 2.56%PRS 77.28
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CSI 0.63rCSI 3.25%PRS 97.47
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CSI 0.63rCSI 1.96%PRS 80.54
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CSI 0.62rCSI 1.94%PRS 82.17
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CSI 0.4rCSI 2.33%PRS 79.67
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CSI 0.38rCSI 3.13%PRS 89
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CSI 0.3rCSI 2.21%PRS 83.71
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 3552543250
Symbol: C1TC_HUMAN
Name: C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 3053686
Title: Primary structure of a human trifunctional enzyme. Isolation of a cDNA encoding methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase.
PubMed ID: 3053686
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 12508121
Title: The DNA sequence and analysis of human chromosome 14.
PubMed ID: 12508121
DOI: 10.1038/nature01348
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 12665801
Title: Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
PubMed ID: 12665801
DOI: 10.1038/nbt810
PubMed ID: 1881876
Title: Expression of active domains of a human folate-dependent trifunctional enzyme in Escherichia coli.
PubMed ID: 1881876
PubMed ID: 14654843
Title: Proteomic characterization of the human centrosome by protein correlation profiling.
PubMed ID: 14654843
DOI: 10.1038/nature02166
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 22223895
Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.
PubMed ID: 22223895
PubMed ID: 22814378
Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
PubMed ID: 22814378
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 25944712
Title: N-terminome analysis of the human mitochondrial proteome.
PubMed ID: 25944712
PubMed ID: 9519408
Title: The 3-D structure of a folate-dependent dehydrogenase/cyclohydrolase bifunctional enzyme at 1.5-A resolution.
PubMed ID: 9519408
PubMed ID: 10828945
Title: Structures of three inhibitor complexes provide insight into the reaction mechanism of the human methylenetetrahydrofolate dehydrogenase/cyclohydrolase.
PubMed ID: 10828945
DOI: 10.1021/bi992734y
PubMed ID: 9611072
Title: Molecular genetic analysis of the gene encoding the trifunctional enzyme MTHFD (methylenetetrahydrofolate-dehydrogenase, methenyltetrahydrofolate-cyclohydrolase, formyltetrahydrofolate synthetase) in patients with neural tube defects.
PubMed ID: 9611072
PubMed ID: 12384833
Title: A polymorphism, R653Q, in the trifunctional enzyme methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase/formyltetrahydrofolate synthetase is a maternal genetic risk factor for neural tube defects: report of the Birth Defects Research Group.
PubMed ID: 12384833
DOI: 10.1086/344213
PubMed ID: 16552426
Title: Confirmation of the R653Q polymorphism of the trifunctional C1-synthase enzyme as a maternal risk for neural tube defects in the Irish population.
PubMed ID: 16552426
PubMed ID: 17000706
Title: Search for low penetrance alleles for colorectal cancer through a scan of 1467 non-synonymous SNPs in 2575 cases and 2707 controls with validation by kin-cohort analysis of 14 704 first-degree relatives.
PubMed ID: 17000706
DOI: 10.1093/hmg/ddl401
PubMed ID: 18767138
Title: The MTHFD1 p.Arg653Gln variant alters enzyme function and increases risk for congenital heart defects.
PubMed ID: 18767138
DOI: 10.1002/humu.20830
PubMed ID: 21813566
Title: Novel inborn error of folate metabolism: identification by exome capture and sequencing of mutations in the MTHFD1 gene in a single proband.
PubMed ID: 21813566
PubMed ID: 25633902
Title: Characterization and review of MTHFD1 deficiency: four new patients, cellular delineation and response to folic and folinic acid treatment.
PubMed ID: 25633902
PubMed ID: 27707659
Title: Precision molecular diagnosis defines specific therapy in Combined Immunodeficiency with Megaloblastic Anemia Secondary to MTHFD1 deficiency.
PubMed ID: 27707659
Sequence Information:
- Length: 935
- Mass: 101531
- Checksum: B834DB504BC1869A
- Sequence:
MAPAEILNGK EISAQIRARL KNQVTQLKEQ VPGFTPRLAI LQVGNRDDSN LYINVKLKAA EEIGIKATHI KLPRTTTESE VMKYITSLNE DSTVHGFLVQ LPLDSENSIN TEEVINAIAP EKDVDGLTSI NAGKLARGDL NDCFIPCTPK GCLELIKETG VPIAGRHAVV VGRSKIVGAP MHDLLLWNNA TVTTCHSKTA HLDEEVNKGD ILVVATGQPE MVKGEWIKPG AIVIDCGINY VPDDKKPNGR KVVGDVAYDE AKERASFITP VPGGVGPMTV AMLMQSTVES AKRFLEKFKP GKWMIQYNNL NLKTPVPSDI DISRSCKPKP IGKLAREIGL LSEEVELYGE TKAKVLLSAL ERLKHRPDGK YVVVTGITPT PLGEGKSTTT IGLVQALGAH LYQNVFACVR QPSQGPTFGI KGGAAGGGYS QVIPMEEFNL HLTGDIHAIT AANNLVAAAI DARIFHELTQ TDKALFNRLV PSVNGVRRFS DIQIRRLKRL GIEKTDPTTL TDEEINRFAR LDIDPETITW QRVLDTNDRF LRKITIGQAP TEKGHTRTAQ FDISVASEIM AVLALTTSLE DMRERLGKMV VASSKKGEPV SAEDLGVSGA LTVLMKDAIK PNLMQTLEGT PVFVHAGPFA NIAHGNSSII ADRIALKLVG PEGFVVTEAG FGADIGMEKF FNIKCRYSGL CPHVVVLVAT VRALKMHGGG PTVTAGLPLP KAYIQENLEL VEKGFSNLKK QIENARMFGI PVVVAVNAFK TDTESELDLI SRLSREHGAF DAVKCTHWAE GGKGALALAQ AVQRAAQAPS SFQLLYDLKL PVEDKIRIIA QKIYGADDIE LLPEAQHKAE VYTKQGFGNL PICMAKTHLS LSHNPEQKGV PTGFILPIRD IRASVGAGFL YPLVGTMSTM PGLPTRPCFY DIDLDPETEQ VNGLF