Details for: PSPN

Gene ID: 5623

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: PSPN

Ensembl ID: ENSG00000125650

Description: persephin

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • CD8-positive, alpha-beta memory T cell, CD45RO-positive CL0001203
    CSI 6.07
    rCSI 7.35%
    PRS 71.74
  • melanocyte of skin CL1000458
    CSI 2.25
    rCSI 3.07%
    PRS 61.61
  • basal cell of epidermis CL0002187
    CSI 0.96
    rCSI 1.7%
    PRS 62.05

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [PSPN](/details-gene/5623) (persephin) is a protein-coding gene located on chromosome 19p13.3. It encodes a secreted neurotrophic factor belonging to the glial cell line-derived neurotrophic factor (GDNF) family of ligands [Link](https://pubmed.ncbi.nlm.nih.gov/9491986/). Functionally, [PSPN](/details-gene/5623) is known for its role as a growth factor involved in nervous system development, particularly through binding the GFRα4 receptor and activating RET proto-oncogene signaling [Link](https://pubmed.ncbi.nlm.nih.gov/11116144/). While established in neuronal contexts, expression data suggests a surprisingly significant role in non-neuronal cell types. **Overall**, it shows its highest significance in [CD8-positive, alpha-beta memory T cell, CD45RO-positive](/details-cell/CL0001203), with notable expression also observed in [melanocyte of skin](/details-cell/CL1000458) and [basal cell of epidermis](/details-cell/CL0002187), indicating potential functions in immune memory and skin homeostasis. A potential link to disease is suggested by its OMIM association ([602921](https://omim.org/entry/602921)). ## Cellular Roles and Expression Landscape The expression profile of [PSPN](/details-gene/5623) suggests a more diverse functional landscape than its canonical role as a neurotrophic factor would imply. In the **Overall** context, the gene's most significant expression is in a subset of the adaptive immune system, specifically [CD8-positive, alpha-beta memory T cell, CD45RO-positive](/details-cell/CL0001203) (CSI: 6.07). This high significance in a long-lived lymphocyte population suggests a potential role in T-cell survival, maintenance, or function, extending its "survival factor" identity beyond the nervous system. Furthermore, [PSPN](/details-gene/5623) demonstrates significant expression within the skin, particularly in [melanocyte of skin](/details-cell/CL1000458) (CSI: 2.25) and [basal cell of epidermis](/details-cell/CL0002187) (CSI: 0.96). Its presence in these two distinct but interacting cell layers of the epidermis is consistent with a role in tissue homeostasis, potentially mediating paracrine signaling related to pigmentation, epidermal regeneration, or protection against cellular stress. This aligns with its known function as a secreted growth factor. ## Pathways and Molecular Function The molecular functions of [PSPN](/details-gene/5623) are centered on its activity as a ligand that initiates intracellular signaling cascades. As annotated, it participates in [Growth factor activity](/details-gene/GO:0008083) and binds to both [Glial cell-derived neurotrophic factor receptor binding](/details-gene/GO:0030116) and [Receptor tyrosine kinase binding](/details-gene/GO:0030971). This binding initiates the [Ret signaling](/details-gene/R-HSA-8853659) pathway, a critical process in [Nervous system development](/details-gene/R-HSA-9675108) and [Axon guidance](/details-gene/R-HSA-422475). The downstream consequences of [PSPN](/details-gene/5623)-induced signaling include the activation of the [Raf/map kinase cascade](/details-gene/R-HSA-5673001) and broader [Mapk family signaling cascades](/details-gene/R-HSA-5683057). These pathways are fundamental to cell survival, proliferation, and differentiation. While these functions are well-established in the context of [Central nervous system development](/details-gene/GO:0007417), its high expression in memory T cells and skin cells suggests these same signaling axes may be co-opted to support long-term cell survival and tissue maintenance in non-neuronal environments. The protein is primarily localized to the [Extracellular space](/details-gene/GO:0005615), consistent with its role as a secreted signaling molecule. ## Research Directions The observed expression pattern of [PSPN](/details-gene/5623) in immune and epidermal cells, which are not its classical sites of action, opens up new avenues for investigation. The data prompts a re-evaluation of its function beyond a pure neurotrophic factor. Based on the available data, several testable hypotheses can be proposed: 1. [PSPN](/details-gene/5623) functions as a paracrine or autocrine survival factor for [CD8-positive, alpha-beta memory T cell, CD45RO-positive](/details-cell/CL0001203), contributing to the maintenance of the long-term memory T-cell pool following an immune response. 2. In the skin, [PSPN](/details-gene/5623) mediates signaling between [basal cell of epidermis](/details-cell/CL0002187) and [melanocyte of skin](/details-cell/CL1000458) to regulate skin pigmentation, proliferation, or the response to UV-induced stress. 3. Dysregulation of [PSPN](/details-gene/5623) signaling contributes to the pathogenesis of certain skin cancers (e.g., melanoma, given its expression in melanocytes) or autoimmune skin disorders by modulating cell survival and immune cell function. To test the first hypothesis regarding its role in T-cell biology, a key experiment would be to culture primary human CD8+ memory T cells in the presence or absence of recombinant [PSPN](/details-gene/5623) protein under survival-stress conditions (e.g., cytokine withdrawal). The impact on cell viability could be measured over time using flow cytometry (e.g., Annexin V/PI staining), and downstream activation of the RET-MAPK signaling axis could be confirmed via phosphoproteomics or Western blotting for phosphorylated ERK and AKT. Given its nature as a secreted growth factor, [PSPN](/details-gene/5623) holds therapeutic potential. Recombinant [PSPN](/details-gene/5623) could be explored as a therapeutic agent to promote the survival and persistence of adoptively transferred T-cells in cancer immunotherapy. Conversely, considering its pro-survival function and expression in malignant thyroid medullary cells [Link](https://pubmed.ncbi.nlm.nih.gov/11116144/), inhibiting the [PSPN](/details-gene/5623)-GFRα4-RET signaling axis with targeted antibodies or small molecule inhibitors may represent a viable strategy for cancers dependent on this pathway.

Genular Protein ID: 2133308806

Symbol: PSPN_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 9491986

Title: Persephin, a novel neurotrophic factor related to GDNF and neurturin.

PubMed ID: 9491986

DOI: 10.1016/s0896-6273(00)80453-5

PubMed ID: 11116144

Title: Human glial cell line-derived neurotrophic factor receptor alpha4 is the receptor for persephin and is predominantly expressed in normal and malignant thyroid medullary cells.

PubMed ID: 11116144

DOI: 10.1074/jbc.m008279200

Sequence Information:

  • Length: 156
  • Mass: 16600
  • Checksum: 6547751653A7044A
  • Sequence:
  • MAVGKFLLGS LLLLSLQLGQ GWGPDARGVP VADGEFSSEQ VAKAGGTWLG THRPLARLRR 
    ALSGPCQLWS LTLSVAELGL GYASEEKVIF RYCAGSCPRG ARTQHGLALA RLQGQGRAHG 
    GPCCRPTRYT DVAFLDDRHR WQRLPQLSAA ACGCGG