Details for: RFC2

Gene ID: 5982

Symbol: RFC2

Ensembl ID: ENSG00000049541

Description: replication factor C subunit 2

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 94.3777
    Cell Significance Index: -14.6800
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 61.6220
    Cell Significance Index: -15.6300
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 46.7251
    Cell Significance Index: -22.0600
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 43.1992
    Cell Significance Index: -17.5500
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 39.8923
    Cell Significance Index: -20.5200
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 18.4448
    Cell Significance Index: -17.6100
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 15.6453
    Cell Significance Index: -19.2900
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 5.1776
    Cell Significance Index: -13.8700
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 5.1013
    Cell Significance Index: -20.1300
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 2.0958
    Cell Significance Index: 207.3200
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 1.3448
    Cell Significance Index: 14.6200
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 1.2108
    Cell Significance Index: 72.6900
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 1.0564
    Cell Significance Index: 114.9100
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.8907
    Cell Significance Index: 30.9500
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.8769
    Cell Significance Index: 103.4100
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.8480
    Cell Significance Index: 137.9300
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.7498
    Cell Significance Index: 676.9800
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 0.6463
    Cell Significance Index: 75.3200
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.6447
    Cell Significance Index: 41.5900
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 0.5203
    Cell Significance Index: 10.8900
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 0.4574
    Cell Significance Index: 6.2400
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.3632
    Cell Significance Index: 72.0800
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.3611
    Cell Significance Index: 24.9700
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.3405
    Cell Significance Index: 150.5500
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.3163
    Cell Significance Index: 172.7300
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: 0.2932
    Cell Significance Index: 9.3900
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.2900
    Cell Significance Index: 39.8200
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 0.2655
    Cell Significance Index: 7.4200
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.2495
    Cell Significance Index: 6.7900
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.2431
    Cell Significance Index: 15.3200
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.2397
    Cell Significance Index: 16.9500
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 0.2248
    Cell Significance Index: 5.9100
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.2207
    Cell Significance Index: 27.1400
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 0.2202
    Cell Significance Index: 5.8900
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.1790
    Cell Significance Index: 35.9000
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.1676
    Cell Significance Index: 30.2100
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.1513
    Cell Significance Index: 7.8600
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 0.1428
    Cell Significance Index: 6.6600
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.1422
    Cell Significance Index: 98.3600
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1407
    Cell Significance Index: 4.0600
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.1265
    Cell Significance Index: 2.7400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 0.1251
    Cell Significance Index: 7.0200
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.1151
    Cell Significance Index: 6.0500
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 0.1020
    Cell Significance Index: 7.6000
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.0817
    Cell Significance Index: 15.5400
  • Cell Name: lactocyte (CL0002325)
    Fold Change: 0.0777
    Cell Significance Index: 10.0400
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.0739
    Cell Significance Index: 26.5100
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.0736
    Cell Significance Index: 9.4300
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: 0.0506
    Cell Significance Index: 2.3800
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.0384
    Cell Significance Index: 6.5700
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.0210
    Cell Significance Index: 0.5600
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: 0.0169
    Cell Significance Index: 0.1800
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: 0.0090
    Cell Significance Index: 0.1500
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.0061
    Cell Significance Index: 0.1300
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.0031
    Cell Significance Index: 0.1100
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0011
    Cell Significance Index: 2.1500
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0040
    Cell Significance Index: -2.4700
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0040
    Cell Significance Index: -6.1300
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0052
    Cell Significance Index: -9.5100
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0055
    Cell Significance Index: -4.0700
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0101
    Cell Significance Index: -13.6800
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.0108
    Cell Significance Index: -0.2700
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0110
    Cell Significance Index: -8.3200
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0142
    Cell Significance Index: -1.4500
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0148
    Cell Significance Index: -9.4000
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0175
    Cell Significance Index: -9.8500
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.0180
    Cell Significance Index: -0.4600
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0182
    Cell Significance Index: -13.3200
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0336
    Cell Significance Index: -3.8500
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0344
    Cell Significance Index: -15.6200
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: -0.0382
    Cell Significance Index: -1.7300
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0503
    Cell Significance Index: -10.5900
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0686
    Cell Significance Index: -9.9700
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: -0.0705
    Cell Significance Index: -2.0700
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0720
    Cell Significance Index: -20.7300
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.0842
    Cell Significance Index: -5.1800
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.1150
    Cell Significance Index: -13.1300
  • Cell Name: glioblast (CL0000030)
    Fold Change: -0.1178
    Cell Significance Index: -0.7400
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: -0.1312
    Cell Significance Index: -1.0700
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.1396
    Cell Significance Index: -8.5600
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.1641
    Cell Significance Index: -12.5900
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.1884
    Cell Significance Index: -19.6200
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.2280
    Cell Significance Index: -18.0600
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: -0.2336
    Cell Significance Index: -3.5200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.2479
    Cell Significance Index: -16.6700
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -0.2772
    Cell Significance Index: -14.4400
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -0.2990
    Cell Significance Index: -8.5700
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: -0.3147
    Cell Significance Index: -4.0300
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.3222
    Cell Significance Index: -9.4900
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.3523
    Cell Significance Index: -15.5900
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.3595
    Cell Significance Index: -6.1600
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.3694
    Cell Significance Index: -9.5000
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.4224
    Cell Significance Index: -9.2500
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.4275
    Cell Significance Index: -16.1900
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -0.4595
    Cell Significance Index: -3.8600
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.4723
    Cell Significance Index: -5.6300
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -0.4813
    Cell Significance Index: -17.6700
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.4864
    Cell Significance Index: -17.0400
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.4966
    Cell Significance Index: -16.2600
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.4978
    Cell Significance Index: -9.2000

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** RFC2 is a subunit of the RFC complex, which is composed of four subunits (α, β, γ, and δ). The RFC complex is responsible for loading single-stranded DNA (ssDNA) onto the DNA polymerase ε complex, allowing for the efficient synthesis of leading-strand DNA during DNA replication. RFC2 is also involved in the repair of DNA double-strand breaks through homologous recombination (HR) and non-homologous end joining (NHEJ). Additionally, RFC2 plays a role in the maintenance of telomeres by facilitating the synthesis of telomere c-strand (lagging strand) DNA. **Pathways and Functions** RFC2 is involved in various cellular pathways, including: 1. **DNA Replication**: RFC2 is essential for the efficient progression of DNA replication through the cell cycle. 2. **Base Excision Repair (BER)**: RFC2 is involved in the repair of DNA damage through the BER pathway. 3. **Homologous Recombination Repair (HRR)**: RFC2 plays a role in the repair of DNA double-strand breaks through HRR. 4. **Telomere Maintenance**: RFC2 facilitates the synthesis of telomere c-strand (lagging strand) DNA. 5. **Cell Cycle Checkpoints**: RFC2 is involved in the regulation of cell cycle checkpoints, including the G2/M checkpoint. 6. **DNA Damage Response**: RFC2 is activated in response to DNA damage, allowing for the efficient repair of DNA lesions. **Clinical Significance** Dysregulation of RFC2 has been implicated in various diseases, including: 1. **Cancer**: RFC2 mutations have been identified in certain types of cancer, including breast and ovarian cancer. 2. **Genetic Disorders**: RFC2 mutations have been associated with genetic disorders, including BRCA2-related disorders. 3. **Telomere Disorders**: RFC2 dysfunction has been implicated in telomere disorders, including telomere shortening and telomere-related diseases. 4. **DNA Repair Defects**: RFC2 mutations have been identified in individuals with DNA repair defects, including those with BRCA2 mutations. In conclusion, RFC2 is a crucial gene involved in DNA replication, repair, and maintenance. Its dysregulation has been implicated in various diseases, highlighting the importance of RFC2 in maintaining genomic stability. Further research is needed to fully understand the role of RFC2 in human disease and to develop therapeutic strategies to target RFC2 in cancer and other diseases.

Genular Protein ID: 2073504482

Symbol: RFC2_HUMAN

Name: Replication factor C subunit 2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 1313560

Title: Sequence and expression in Escherichia coli of the 40-kDa subunit of activator 1 (replication factor C) of HeLa cells.

PubMed ID: 1313560

DOI: 10.1073/pnas.89.7.2516

PubMed ID: 11003705

Title: Comparative genomic sequence analysis of the Williams syndrome region (LIMK1-RFC2) of human chromosome 7q11.23.

PubMed ID: 11003705

DOI: 10.1007/s003350010166

PubMed ID: 19054851

Title: Human protein factory for converting the transcriptome into an in vitro-expressed proteome.

PubMed ID: 19054851

DOI: 10.1038/nmeth.1273

PubMed ID: 12853948

Title: The DNA sequence of human chromosome 7.

PubMed ID: 12853948

DOI: 10.1038/nature01782

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 15655353

Title: The second subunit of the replication factor C complex (RFC40) and the regulatory subunit (RIalpha) of protein kinase A form a protein complex promoting cell survival.

PubMed ID: 15655353

PubMed ID: 18499658

Title: Studies with the human cohesin establishment factor, ChlR1. Association of ChlR1 with Ctf18-RFC and Fen1.

PubMed ID: 18499658

DOI: 10.1074/jbc.m802696200

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22223895

Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.

PubMed ID: 22223895

DOI: 10.1074/mcp.m111.015131

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

Sequence Information:

  • Length: 354
  • Mass: 39157
  • Checksum: B50AC8EEF89F64A9
  • Sequence:
  • MEVEAVCGGA GEVEAQDSDP APAFSKAPGS AGHYELPWVE KYRPVKLNEI VGNEDTVSRL 
    EVFAREGNVP NIIIAGPPGT GKTTSILCLA RALLGPALKD AMLELNASND RGIDVVRNKI 
    KMFAQQKVTL PKGRHKIIIL DEADSMTDGA QQALRRTMEI YSKTTRFALA CNASDKIIEP 
    IQSRCAVLRY TKLTDAQILT RLMNVIEKER VPYTDDGLEA IIFTAQGDMR QALNNLQSTF 
    SGFGFINSEN VFKVCDEPHP LLVKEMIQHC VNANIDEAYK ILAHLWHLGY SPEDIIGNIF 
    RVCKTFQMAE YLKLEFIKEI GYTHMKIAEG VNSLLQMAGL LARLCQKTMA PVAS

Genular Protein ID: 1208500598

Symbol: A0A087WVY3_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 12853948

Title: The DNA sequence of human chromosome 7.

PubMed ID: 12853948

DOI: 10.1038/nature01782

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 19608861

Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.

PubMed ID: 19608861

DOI: 10.1126/science.1175371

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

Sequence Information:

  • Length: 251
  • Mass: 28377
  • Checksum: D094805B36DECB6D
  • Sequence:
  • MCPTSSLRGI DVVRNKIKMF AQQKVTLPKG RHKIIILDEA DSMTDGAQQA LRRTMEIYSK 
    TTRFALACNA SDKIIEPIQS RCAVLRYTKL TDAQILTRLM NVIEKERVPY TDDGLEAIIF 
    TAQGDMRQAL NNLQSTFSGF GFINSENVFK VCDEPHPLLV KEMIQHCVNA NIDEAYKILA 
    HLWHLGYSPE DIIGNIFRVC KTFQMAEYLK LEFIKEIGYT HMKIAEGVNS LLQMAGLLAR 
    LCQKTMAPVA S

Genular Protein ID: 2331664810

Symbol: Q75MT5_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11181995

Title: The sequence of the human genome.

PubMed ID: 11181995

DOI: 10.1126/science.1058040

PubMed ID: 12853948

Title: The DNA sequence of human chromosome 7.

PubMed ID: 12853948

DOI: 10.1038/nature01782

Sequence Information:

  • Length: 320
  • Mass: 35244
  • Checksum: D6E72DD28EA014E8
  • Sequence:
  • MEVEAVCGGA GEVEAQDSDP APAFSKAPGS AGHYELPWVE KYRPVKLNEI VGNEDTVSRL 
    EVFAREGNVP NIIIAGPPGT GKTTSILCLA RALLGPALKD AMLELNASND SMTDGAQQAL 
    RRTMEIYSKT TRFALACNAS DKIIEPIQSR CAVLRYTKLT DAQILTRLMN VIEKERVPYT 
    DDGLEAIIFT AQGDMRQALN NLQSTFSGFG FINSENVFKV CDEPHPLLVK EMIQHCVNAN 
    IDEAYKILAH LWHLGYSPED IIGNIFRVCK TFQMAEYLKL EFIKEIGYTH MKIAEGVNSL 
    LQMAGLLARL CQKTMAPVAS

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.