Details for: TBL1X

Gene ID: 6907

Symbol: TBL1X

Ensembl ID: ENSG00000101849

Description: transducin beta like 1 X-linked

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 259.2172
    Cell Significance Index: -40.3200
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 158.8451
    Cell Significance Index: -40.2900
  • Cell Name: smooth muscle fiber of ileum (CL1000278)
    Fold Change: 84.9356
    Cell Significance Index: -40.1000
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 79.1125
    Cell Significance Index: -32.1400
  • Cell Name: peripheral blood mononuclear cell (CL2000001)
    Fold Change: 71.5806
    Cell Significance Index: -36.8200
  • Cell Name: ciliated cell of the bronchus (CL0002332)
    Fold Change: 33.7473
    Cell Significance Index: -32.2200
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 32.8641
    Cell Significance Index: -40.5200
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 13.9182
    Cell Significance Index: -37.2900
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 11.4503
    Cell Significance Index: -25.0600
  • Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
    Fold Change: 10.7376
    Cell Significance Index: -32.9800
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 10.3243
    Cell Significance Index: -40.7400
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 9.2924
    Cell Significance Index: 248.1200
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 2.9079
    Cell Significance Index: 577.0800
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 2.4796
    Cell Significance Index: 139.1400
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 1.9980
    Cell Significance Index: 27.2600
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: 1.7761
    Cell Significance Index: 78.5600
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 1.6979
    Cell Significance Index: 47.4500
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: 1.6160
    Cell Significance Index: 61.2000
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: 1.5943
    Cell Significance Index: 40.9800
  • Cell Name: centrilobular region hepatocyte (CL0019029)
    Fold Change: 1.5705
    Cell Significance Index: 26.4600
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 1.2470
    Cell Significance Index: 145.3200
  • Cell Name: hippocampal astrocyte (CL0002604)
    Fold Change: 1.1664
    Cell Significance Index: 16.3100
  • Cell Name: GABAergic amacrine cell (CL4030027)
    Fold Change: 1.1382
    Cell Significance Index: 14.1200
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: 1.1017
    Cell Significance Index: 27.5400
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.9555
    Cell Significance Index: 1799.0200
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: 0.9547
    Cell Significance Index: 433.2900
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: 0.7945
    Cell Significance Index: 60.9700
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.7333
    Cell Significance Index: 662.0900
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: 0.7047
    Cell Significance Index: 15.4300
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.6109
    Cell Significance Index: 31.7400
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: 0.6071
    Cell Significance Index: 63.2100
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: 0.5690
    Cell Significance Index: 361.3500
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: 0.5625
    Cell Significance Index: 764.7900
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.5257
    Cell Significance Index: 94.7700
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.5231
    Cell Significance Index: 64.3300
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.4930
    Cell Significance Index: 80.1900
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.4623
    Cell Significance Index: 9.8500
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: 0.4600
    Cell Significance Index: 848.3900
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.4544
    Cell Significance Index: 699.5500
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.4444
    Cell Significance Index: 48.3400
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.4341
    Cell Significance Index: 87.0700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.3867
    Cell Significance Index: 53.1000
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: 0.3366
    Cell Significance Index: 6.5700
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.2836
    Cell Significance Index: 196.1700
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: 0.2639
    Cell Significance Index: 7.0700
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.2562
    Cell Significance Index: 139.9400
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.2519
    Cell Significance Index: 47.9300
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.2297
    Cell Significance Index: 14.4800
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: 0.2231
    Cell Significance Index: 2.6600
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.1270
    Cell Significance Index: 8.7900
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.1259
    Cell Significance Index: 12.4500
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: 0.1258
    Cell Significance Index: 8.4600
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.1229
    Cell Significance Index: 15.7600
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: 0.1004
    Cell Significance Index: 6.1700
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.0883
    Cell Significance Index: 31.6600
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.0692
    Cell Significance Index: 1.5000
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.0549
    Cell Significance Index: 24.2800
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: 0.0328
    Cell Significance Index: 5.6000
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: 0.0146
    Cell Significance Index: 10.7200
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: 0.0016
    Cell Significance Index: 0.2300
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: -0.0080
    Cell Significance Index: -0.2300
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0082
    Cell Significance Index: -5.1400
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0092
    Cell Significance Index: -6.7900
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.0181
    Cell Significance Index: -0.3100
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0293
    Cell Significance Index: -16.5000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0456
    Cell Significance Index: -34.5500
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.0785
    Cell Significance Index: -3.6900
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: -0.0806
    Cell Significance Index: -3.6600
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0870
    Cell Significance Index: -18.3200
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: -0.0878
    Cell Significance Index: -10.3600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.1094
    Cell Significance Index: -11.1800
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.1138
    Cell Significance Index: -32.7500
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: -0.1151
    Cell Significance Index: -1.0600
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.1235
    Cell Significance Index: -5.7600
  • Cell Name: cardiac endothelial cell (CL0010008)
    Fold Change: -0.1432
    Cell Significance Index: -2.0600
  • Cell Name: basal epithelial cell of prostatic duct (CL0002236)
    Fold Change: -0.1724
    Cell Significance Index: -1.5300
  • Cell Name: periportal region hepatocyte (CL0019026)
    Fold Change: -0.1816
    Cell Significance Index: -2.6800
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.1958
    Cell Significance Index: -25.3000
  • Cell Name: OFF midget ganglion cell (CL4033047)
    Fold Change: -0.2005
    Cell Significance Index: -2.5000
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.2122
    Cell Significance Index: -24.3100
  • Cell Name: pancreatic endocrine cell (CL0008024)
    Fold Change: -0.2195
    Cell Significance Index: -25.0600
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.3172
    Cell Significance Index: -23.6400
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.3298
    Cell Significance Index: -26.1200
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.3558
    Cell Significance Index: -7.3800
  • Cell Name: astrocyte of the cerebral cortex (CL0002605)
    Fold Change: -0.3684
    Cell Significance Index: -6.3700
  • Cell Name: ON midget ganglion cell (CL4033046)
    Fold Change: -0.3906
    Cell Significance Index: -4.9300
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.4068
    Cell Significance Index: -13.0300
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.4097
    Cell Significance Index: -20.7000
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: -0.4301
    Cell Significance Index: -30.4200
  • Cell Name: type I muscle cell (CL0002211)
    Fold Change: -0.4611
    Cell Significance Index: -11.2500
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.4853
    Cell Significance Index: -13.2100
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.4978
    Cell Significance Index: -30.5200
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: -0.4993
    Cell Significance Index: -32.2100
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: -0.5657
    Cell Significance Index: -29.7000
  • Cell Name: corneal endothelial cell (CL0000132)
    Fold Change: -0.5659
    Cell Significance Index: -8.6100
  • Cell Name: cortical interneuron (CL0008031)
    Fold Change: -0.5781
    Cell Significance Index: -13.8700
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -0.5829
    Cell Significance Index: -30.3600
  • Cell Name: fibroblast of cardiac tissue (CL0002548)
    Fold Change: -0.5836
    Cell Significance Index: -8.3800
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: -0.6011
    Cell Significance Index: -11.1100
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: -0.6046
    Cell Significance Index: -4.9300

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** TBL1X is a F-box-like/WD repeat-containing protein, which suggests its involvement in protein-protein interactions and transcriptional regulation. The gene is highly conserved across species, indicating its essential role in cellular functions. TBL1X is a ubiquitin ligase, which means it plays a key role in protein degradation and turnover. The gene is also involved in the regulation of circadian gene expression, suggesting its potential role in rhythmical processes. Furthermore, TBL1X has been implicated in the regulation of cholesterol biosynthesis and lipid metabolism, highlighting its importance in metabolic processes. **Pathways and Functions** TBL1X is involved in several signaling pathways, including: 1. **Circadian clock regulation**: TBL1X interacts with clock genes, such as Bmal1 and npas2, to regulate circadian gene expression. 2. **Notch signaling**: TBL1X is a component of the Notch signaling pathway, which plays a crucial role in cell fate decisions and development. 3. **Cholesterol biosynthesis**: TBL1X regulates cholesterol biosynthesis by interacting with SREBP (sterol regulatory element-binding protein) and PPARα (peroxisome proliferator-activated receptor alpha). 4. **Lipid metabolism**: TBL1X is involved in the regulation of lipid metabolism by interacting with PPARα and NR1H3. 5. **Transcriptional regulation**: TBL1X regulates transcription by interacting with RNA polymerase II and other transcription factors. **Clinical Significance** TBL1X has been implicated in several diseases, including: 1. **Pervasive developmental disorders**: TBL1X mutations have been associated with pervasive developmental disorders, such as autism spectrum disorder. 2. **Disorders of nervous system development**: TBL1X is involved in the development of the nervous system, and mutations in the gene have been associated with disorders of nervous system development. 3. **Disorders of signal transduction**: TBL1X is involved in the regulation of signal transduction pathways, and mutations in the gene have been associated with disorders of signal transduction by growth factor receptors and second messengers. 4. **Cholesterol-related disorders**: TBL1X regulates cholesterol biosynthesis, and mutations in the gene have been associated with cholesterol-related disorders. In conclusion, TBL1X is a multifunctional gene that plays a crucial role in various cellular processes, including transcriptional regulation, circadian rhythm control, and immune response. Its involvement in several diseases highlights its importance in human health and disease. Further research is needed to fully understand the functions of TBL1X and its role in human disease.

Genular Protein ID: 1174192327

Symbol: TBL1X_HUMAN

Name: F-box-like/WD repeat-containing protein TBL1X

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 10330347

Title: X-linked late-onset sensorineural deafness caused by a deletion involving OA1 and a novel gene containing WD-40 repeats.

PubMed ID: 10330347

DOI: 10.1086/302408

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15772651

Title: The DNA sequence of the human X chromosome.

PubMed ID: 15772651

DOI: 10.1038/nature03440

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 10809664

Title: A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness.

PubMed ID: 10809664

PubMed ID: 10944117

Title: Both corepressor proteins SMRT and N-CoR exist in large protein complexes containing HDAC3.

PubMed ID: 10944117

DOI: 10.1093/emboj/19.16.4342

PubMed ID: 11389839

Title: Siah-1, SIP, and Ebi collaborate in a novel pathway for beta-catenin degradation linked to p53 responses.

PubMed ID: 11389839

DOI: 10.1016/s1097-2765(01)00242-8

PubMed ID: 11931768

Title: The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2.

PubMed ID: 11931768

DOI: 10.1016/s1097-2765(02)00468-9

PubMed ID: 12628926

Title: Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1.

PubMed ID: 12628926

DOI: 10.1093/emboj/cdg120

PubMed ID: 14980219

Title: A corepressor/coactivator exchange complex required for transcriptional activation by nuclear receptors and other regulated transcription factors.

PubMed ID: 14980219

DOI: 10.1016/s0092-8674(04)00133-3

PubMed ID: 24943844

Title: SUMOylation of GPS2 protein regulates its transcription-suppressing function.

PubMed ID: 24943844

DOI: 10.1091/mbc.e13-12-0733

PubMed ID: 27603907

Title: Mutations in TBL1X are associated with central hypothyroidism.

PubMed ID: 27603907

DOI: 10.1210/jc.2016-2531

PubMed ID: 27880911

Title: USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B.

PubMed ID: 27880911

DOI: 10.1016/j.celrep.2016.10.076

PubMed ID: 30591955

Title: Central hypothyroidism and novel clinical phenotypes in hemizygous truncation of TBL1X.

PubMed ID: 30591955

DOI: 10.1210/js.2018-00144

PubMed ID: 21240272

Title: Structural basis for the assembly of the SMRT/NCoR core transcriptional repression machinery.

PubMed ID: 21240272

DOI: 10.1038/nsmb.1983

Sequence Information:

  • Length: 577
  • Mass: 62496
  • Checksum: D830A37781E2A15C
  • Sequence:
  • MTELAGASSS CCHRPAGRGA MQSVLHHFQR LRGREGGSHF INTSSPRGEA KMSITSDEVN 
    FLVYRYLQES GFSHSAFTFG IESHISQSNI NGTLVPPAAL ISILQKGLQY VEAEISINED 
    GTVFDGRPIE SLSLIDAVMP DVVQTRQQAF REKLAQQQAS AAAAAAAATA AATAATTTSA 
    GVSHQNPSKN REATVNGEEN RAHSVNNHAK PMEIDGEVEI PSSKATVLRG HESEVFICAW 
    NPVSDLLASG SGDSTARIWN LNENSNGGST QLVLRHCIRE GGHDVPSNKD VTSLDWNTNG 
    TLLATGSYDG FARIWTEDGN LASTLGQHKG PIFALKWNRK GNYILSAGVD KTTIIWDAHT 
    GEAKQQFPFH SAPALDVDWQ NNTTFASCST DMCIHVCRLG CDRPVKTFQG HTNEVNAIKW 
    DPSGMLLASC SDDMTLKIWS MKQEVCIHDL QAHNKEIYTI KWSPTGPATS NPNSNIMLAS 
    ASFDSTVRLW DIERGVCTHT LTKHQEPVYS VAFSPDGKYL ASGSFDKCVH IWNTQSGNLV 
    HSYRGTGGIF EVCWNARGDK VGASASDGSV CVLDLRK

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.