Details for: RAG1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 25.5231
Cell Significance Index: -3.9700 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 15.5336
Cell Significance Index: -3.9400 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 3.2442
Cell Significance Index: -4.0000 - Cell Name: professional antigen presenting cell (CL0000145)
Fold Change: 2.5414
Cell Significance Index: 22.9800 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 1.4334
Cell Significance Index: -3.8400 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.8440
Cell Significance Index: 160.6300 - Cell Name: pre-B-I cell (CL0000956)
Fold Change: 0.5599
Cell Significance Index: 2.6300 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.3627
Cell Significance Index: 35.8800 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.3293
Cell Significance Index: 297.3400 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.2317
Cell Significance Index: 25.2100 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.2295
Cell Significance Index: 6.1500 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.2185
Cell Significance Index: 13.1200 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.2061
Cell Significance Index: 33.5200 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.1747
Cell Significance Index: 11.2700 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.1611
Cell Significance Index: 3.4900 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.1333
Cell Significance Index: 6.0400 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.1295
Cell Significance Index: 3.7300 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.1267
Cell Significance Index: 8.7700 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 0.1019
Cell Significance Index: 29.3300 - Cell Name: helper T cell (CL0000912)
Fold Change: 0.0971
Cell Significance Index: 1.3800 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: 0.0926
Cell Significance Index: 1.9200 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0796
Cell Significance Index: 5.0200 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.0782
Cell Significance Index: 15.6800 - Cell Name: epithelial cell of thymus (CL0002293)
Fold Change: 0.0741
Cell Significance Index: 0.5700 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: 0.0604
Cell Significance Index: 0.6300 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.0551
Cell Significance Index: 19.7600 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.0549
Cell Significance Index: 1.1700 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 0.0507
Cell Significance Index: 1.3800 - Cell Name: abnormal cell (CL0001061)
Fold Change: 0.0304
Cell Significance Index: 3.1100 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 0.0281
Cell Significance Index: 0.9000 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: 0.0241
Cell Significance Index: 3.5100 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.0180
Cell Significance Index: 0.4500 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.0152
Cell Significance Index: 0.7900 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.0120
Cell Significance Index: 0.9200 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.0081
Cell Significance Index: 0.1100 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 0.0078
Cell Significance Index: 0.9100 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0063
Cell Significance Index: 0.2200 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.0053
Cell Significance Index: 0.9600 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.0037
Cell Significance Index: 1.6400 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: 0.0021
Cell Significance Index: 0.1300 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.0008
Cell Significance Index: 1.4600 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0003
Cell Significance Index: 0.5700 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.0002
Cell Significance Index: 0.0100 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0009
Cell Significance Index: -1.3400 - Cell Name: neoplastic cell (CL0001063)
Fold Change: -0.0014
Cell Significance Index: -0.2900 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0023
Cell Significance Index: -3.1400 - Cell Name: cell in vitro (CL0001034)
Fold Change: -0.0028
Cell Significance Index: -1.5200 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0032
Cell Significance Index: -2.0300 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0035
Cell Significance Index: -2.5800 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0050
Cell Significance Index: -3.8000 - Cell Name: odontoblast (CL0000060)
Fold Change: -0.0051
Cell Significance Index: -0.6600 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0055
Cell Significance Index: -3.1000 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0058
Cell Significance Index: -4.2700 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0071
Cell Significance Index: -3.2300 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: -0.0093
Cell Significance Index: -1.1400 - Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
Fold Change: -0.0119
Cell Significance Index: -0.1700 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0142
Cell Significance Index: -2.4300 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.0146
Cell Significance Index: -1.8800 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.0147
Cell Significance Index: -0.4100 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0182
Cell Significance Index: -2.0800 - Cell Name: myometrial cell (CL0002366)
Fold Change: -0.0217
Cell Significance Index: -0.2500 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0219
Cell Significance Index: -4.6200 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.0226
Cell Significance Index: -1.5200 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: -0.0237
Cell Significance Index: -3.2600 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.0242
Cell Significance Index: -0.5300 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -0.0269
Cell Significance Index: -1.3600 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.0314
Cell Significance Index: -0.8400 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.0371
Cell Significance Index: -3.8600 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0416
Cell Significance Index: -4.9100 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.0448
Cell Significance Index: -3.5500 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.0449
Cell Significance Index: -2.7600 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.0464
Cell Significance Index: -3.4600 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0555
Cell Significance Index: -2.6100 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.0556
Cell Significance Index: -2.2800 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.0571
Cell Significance Index: -2.4800 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.0607
Cell Significance Index: -1.5600 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.0615
Cell Significance Index: -1.2000 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.0622
Cell Significance Index: -1.5900 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.0634
Cell Significance Index: -3.5600 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.0671
Cell Significance Index: -2.3500 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.0678
Cell Significance Index: -3.0000 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.0688
Cell Significance Index: -1.4600 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.0709
Cell Significance Index: -3.7200 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.0771
Cell Significance Index: -2.4600 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.0790
Cell Significance Index: -2.9900 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.0791
Cell Significance Index: -2.5900 - Cell Name: decidual cell (CL2000002)
Fold Change: -0.0804
Cell Significance Index: -1.2900 - Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
Fold Change: -0.0818
Cell Significance Index: -2.0400 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.0862
Cell Significance Index: -1.8100 - Cell Name: keratocyte (CL0002363)
Fold Change: -0.0882
Cell Significance Index: -1.4000 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.0883
Cell Significance Index: -3.0700 - Cell Name: hepatoblast (CL0005026)
Fold Change: -0.0892
Cell Significance Index: -1.5000 - Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
Fold Change: -0.0908
Cell Significance Index: -2.2700 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.0929
Cell Significance Index: -1.4000 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.0953
Cell Significance Index: -2.7200 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: -0.0991
Cell Significance Index: -1.4300 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: -0.1074
Cell Significance Index: -1.2200 - Cell Name: cardiac muscle cell (CL0000746)
Fold Change: -0.1077
Cell Significance Index: -1.5900 - Cell Name: neural progenitor cell (CL0011020)
Fold Change: -0.1092
Cell Significance Index: -1.0800 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.1095
Cell Significance Index: -3.1400
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 2151630097
Symbol: RAG1_HUMAN
Name: V(D)J recombination-activating protein 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 2598259
Title: The V(D)J recombination activating gene, RAG-1.
PubMed ID: 2598259
PubMed ID: 16554811
Title: Human chromosome 11 DNA sequence and analysis including novel gene identification.
PubMed ID: 16554811
DOI: 10.1038/nature04632
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 8052633
Title: RAG-1 interacts with the repeated amino acid motif of the human homologue of the yeast protein SRP1.
PubMed ID: 8052633
PubMed ID: 8844221
Title: Two new variants of RAG-1 protein predicted by SSCP.
PubMed ID: 8844221
DOI: 10.1002/(sici)1098-1004(1996)8:2<191::aid-humu15>3.0.co;2-y
PubMed ID: 8810255
Title: RAG mutations in human B cell-negative SCID.
PubMed ID: 8810255
PubMed ID: 9630231
Title: Partial V(D)J recombination activity leads to Omenn syndrome.
PubMed ID: 9630231
PubMed ID: 10606976
Title: Characterization of immune function and analysis of RAG gene mutations in Omenn syndrome and related disorders.
PubMed ID: 10606976
PubMed ID: 11133745
Title: V(D)J recombination defects in lymphocytes due to RAG mutations: severe immunodeficiency with a spectrum of clinical presentations.
PubMed ID: 11133745
PubMed ID: 11520796
Title: Identification of anti-herpes simplex virus antibody-producing B cells in a patient with an atypical RAG1 immunodeficiency.
PubMed ID: 11520796
PubMed ID: 16276422
Title: A novel immunodeficiency associated with hypomorphic RAG1 mutations and CMV infection.
PubMed ID: 16276422
DOI: 10.1172/jci25178
PubMed ID: 18463379
Title: An immunodeficiency disease with RAG mutations and granulomas.
PubMed ID: 18463379
DOI: 10.1056/nejmoa073966
PubMed ID: 19912631
Title: Molecular analysis of T-B-NK+ severe combined immunodeficiency and Omenn syndrome cases in Saudi Arabia.
PubMed ID: 19912631
PubMed ID: 20956421
Title: Highly variable clinical phenotypes of hypomorphic RAG1 mutations.
PubMed ID: 20956421
PubMed ID: 21624848
Title: Novel mutations in RAG1/2 and ADA genes in Israeli patients presenting with T-B-SCID or Omenn syndrome.
PubMed ID: 21624848
PubMed ID: 21771083
Title: Clinical characteristics and molecular analysis of three Chinese children with Omenn syndrome.
PubMed ID: 21771083
PubMed ID: 24996264
Title: A hypomorphic recombination-activating gene 1 (RAG1) mutation resulting in a phenotype resembling common variable immunodeficiency.
PubMed ID: 24996264
PubMed ID: 25516070
Title: Identification of patients with RAG mutations previously diagnosed with common variable immunodeficiency disorders.
PubMed ID: 25516070
PubMed ID: 28216420
Title: Evaluation of RAG1 mutations in an adult with combined immunodeficiency and progressive multifocal leukoencephalopathy.
PubMed ID: 28216420
Sequence Information:
- Length: 1043
- Mass: 119097
- Checksum: 5417A7413DA8CB65
- Sequence:
MAASFPPTLG LSSAPDEIQH PHIKFSEWKF KLFRVRSFEK TPEEAQKEKK DSFEGKPSLE QSPAVLDKAD GQKPVPTQPL LKAHPKFSKK FHDNEKARGK AIHQANLRHL CRICGNSFRA DEHNRRYPVH GPVDGKTLGL LRKKEKRATS WPDLIAKVFR IDVKADVDSI HPTEFCHNCW SIMHRKFSSA PCEVYFPRNV TMEWHPHTPS CDICNTARRG LKRKSLQPNL QLSKKLKTVL DQARQARQHK RRAQARISSK DVMKKIANCS KIHLSTKLLA VDFPEHFVKS ISCQICEHIL ADPVETNCKH VFCRVCILRC LKVMGSYCPS CRYPCFPTDL ESPVKSFLSV LNSLMVKCPA KECNEEVSLE KYNHHISSHK ESKEIFVHIN KGGRPRQHLL SLTRRAQKHR LRELKLQVKA FADKEEGGDV KSVCMTLFLL ALRARNEHRQ ADELEAIMQG KGSGLQPAVC LAIRVNTFLS CSQYHKMYRT VKAITGRQIF QPLHALRNAE KVLLPGYHHF EWQPPLKNVS SSTDVGIIDG LSGLSSSVDD YPVDTIAKRF RYDSALVSAL MDMEEDILEG MRSQDLDDYL NGPFTVVVKE SCDGMGDVSE KHGSGPVVPE KAVRFSFTIM KITIAHSSQN VKVFEEAKPN SELCCKPLCL MLADESDHET LTAILSPLIA EREAMKSSEL MLELGGILRT FKFIFRGTGY DEKLVREVEG LEASGSVYIC TLCDATRLEA SQNLVFHSIT RSHAENLERY EVWRSNPYHE SVEELRDRVK GVSAKPFIET VPSIDALHCD IGNAAEFYKI FQLEIGEVYK NPNASKEERK RWQATLDKHL RKKMNLKPIM RMNGNFARKL MTKETVDAVC ELIPSEERHE ALRELMDLYL KMKPVWRSSC PAKECPESLC QYSFNSQRFA ELLSTKFKYR YEGKITNYFH KTLAHVPEII ERDGSIGAWA SEGNESGNKL FRRFRKMNAR QSKCYEMEDV LKHHWLYTSK YLQKFMNAHN ALKTSGFTMN PQASLGDPLG IEDSLESQDS MEF
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.