Details for: RFC5

Gene ID: 5985

Symbol: RFC5

Ensembl ID: ENSG00000111445

Description: replication factor C subunit 5

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 35.8673
    Cell Significance Index: -9.1000
  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 31.4378
    Cell Significance Index: -4.8900
  • Cell Name: embryonic stem cell (CL0002322)
    Fold Change: 30.9991
    Cell Significance Index: -12.7700
  • Cell Name: orthochromatic erythroblast (CL0000552)
    Fold Change: 8.6053
    Cell Significance Index: -10.6100
  • Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
    Fold Change: 3.9718
    Cell Significance Index: -10.6400
  • Cell Name: stromal cell of bone marrow (CL0010001)
    Fold Change: 2.8940
    Cell Significance Index: -11.4200
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 1.3350
    Cell Significance Index: 132.0600
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.8653
    Cell Significance Index: 51.9500
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.7637
    Cell Significance Index: 83.0700
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 0.6921
    Cell Significance Index: 17.6800
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.6477
    Cell Significance Index: 105.3500
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: 0.6273
    Cell Significance Index: 21.8000
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 0.6233
    Cell Significance Index: 72.6400
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.5586
    Cell Significance Index: 504.3900
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.5401
    Cell Significance Index: 107.1900
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: 0.4535
    Cell Significance Index: 4.9300
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 0.3893
    Cell Significance Index: 45.9100
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 0.3742
    Cell Significance Index: 21.0000
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.3661
    Cell Significance Index: 73.4400
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.3403
    Cell Significance Index: 17.6800
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.2836
    Cell Significance Index: 19.6100
  • Cell Name: decidual cell (CL2000002)
    Fold Change: 0.2637
    Cell Significance Index: 4.2300
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: 0.2526
    Cell Significance Index: 8.0900
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.2472
    Cell Significance Index: 15.5800
  • Cell Name: umbrella cell of urothelium (CL4030056)
    Fold Change: 0.2346
    Cell Significance Index: 2.1600
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 0.2165
    Cell Significance Index: 6.0500
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.2071
    Cell Significance Index: 113.0800
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.1934
    Cell Significance Index: 36.8100
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.1929
    Cell Significance Index: 69.2000
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: 0.1718
    Cell Significance Index: 75.9700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: 0.1668
    Cell Significance Index: 22.9100
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: 0.1596
    Cell Significance Index: 3.3400
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 0.1518
    Cell Significance Index: 9.8000
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.1486
    Cell Significance Index: 3.2200
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: 0.1370
    Cell Significance Index: 3.6700
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1302
    Cell Significance Index: 3.7500
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: 0.1294
    Cell Significance Index: 15.9200
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: 0.1248
    Cell Significance Index: 3.5600
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.1162
    Cell Significance Index: 80.3700
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: 0.1142
    Cell Significance Index: 20.5900
  • Cell Name: glioblast (CL0000030)
    Fold Change: 0.1003
    Cell Significance Index: 0.6300
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: 0.0992
    Cell Significance Index: 2.4800
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.0922
    Cell Significance Index: 4.1800
  • Cell Name: sebum secreting cell (CL0000317)
    Fold Change: 0.0848
    Cell Significance Index: 6.0000
  • Cell Name: odontoblast (CL0000060)
    Fold Change: 0.0477
    Cell Significance Index: 6.1200
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: 0.0350
    Cell Significance Index: 0.9200
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.0282
    Cell Significance Index: 0.6000
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 0.0269
    Cell Significance Index: 0.7200
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: 0.0222
    Cell Significance Index: 0.3800
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: 0.0117
    Cell Significance Index: 0.1400
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 0.0064
    Cell Significance Index: 0.1700
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0032
    Cell Significance Index: 6.0400
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 0.0007
    Cell Significance Index: 0.0200
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.0006
    Cell Significance Index: -0.0300
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0020
    Cell Significance Index: -3.0800
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0022
    Cell Significance Index: -4.0800
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.0024
    Cell Significance Index: -0.0400
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.0029
    Cell Significance Index: -0.1800
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0046
    Cell Significance Index: -6.3100
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0068
    Cell Significance Index: -4.3100
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0094
    Cell Significance Index: -6.8900
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0094
    Cell Significance Index: -7.1000
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.0112
    Cell Significance Index: -0.7500
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.0122
    Cell Significance Index: -1.5800
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0151
    Cell Significance Index: -11.1500
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0158
    Cell Significance Index: -7.1600
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.0171
    Cell Significance Index: -0.6000
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -0.0176
    Cell Significance Index: -0.2400
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0199
    Cell Significance Index: -11.2200
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0212
    Cell Significance Index: -13.2500
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0238
    Cell Significance Index: -6.8600
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0252
    Cell Significance Index: -4.3100
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0278
    Cell Significance Index: -2.8400
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0282
    Cell Significance Index: -3.2300
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0311
    Cell Significance Index: -4.5200
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.0502
    Cell Significance Index: -3.7400
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: -0.0548
    Cell Significance Index: -0.5700
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0624
    Cell Significance Index: -13.1400
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.0640
    Cell Significance Index: -4.9100
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.0781
    Cell Significance Index: -3.6700
  • Cell Name: epithelial cell of uterus (CL0002149)
    Fold Change: -0.0786
    Cell Significance Index: -1.0900
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: -0.0792
    Cell Significance Index: -4.1600
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.0859
    Cell Significance Index: -3.8000
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0863
    Cell Significance Index: -5.2900
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.0992
    Cell Significance Index: -2.5500
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.1000
    Cell Significance Index: -10.4100
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.1048
    Cell Significance Index: -3.9700
  • Cell Name: proerythroblast (CL0000547)
    Fold Change: -0.1186
    Cell Significance Index: -1.7000
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.1201
    Cell Significance Index: -2.6300
  • Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
    Fold Change: -0.1285
    Cell Significance Index: -10.1800
  • Cell Name: radial glial cell (CL0000681)
    Fold Change: -0.1416
    Cell Significance Index: -0.8400
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: -0.1646
    Cell Significance Index: -2.4800
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -0.1679
    Cell Significance Index: -1.4100
  • Cell Name: interstitial cell of ovary (CL0002094)
    Fold Change: -0.1687
    Cell Significance Index: -2.1600
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: -0.1716
    Cell Significance Index: -5.0400
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -0.1822
    Cell Significance Index: -9.4900
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.1842
    Cell Significance Index: -6.0300
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.1912
    Cell Significance Index: -6.0900
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.1962
    Cell Significance Index: -5.7800
  • Cell Name: kidney cell (CL1000497)
    Fold Change: -0.2117
    Cell Significance Index: -1.6900

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** 1. **Subunit of the RFC complex**: RFC5 is a subunit of the Replication Factor C (RFC) complex, which is responsible for loading DNA polymerase alpha onto the replication fork. 2. **DNA replication**: RFC5 is involved in the process of DNA replication, specifically in the loading of DNA polymerase alpha onto the replication fork. 3. **DNA repair**: RFC5 is also involved in DNA repair, particularly in the process of homologous recombination repair and base excision repair. 4. **Cell cycle regulation**: RFC5 plays a role in regulating the cell cycle, particularly in the G2/M checkpoint. 5. **DNA damage response**: RFC5 is involved in the response to DNA damage, particularly in the recognition of DNA damage by the PCNA-containing replication complex. **Pathways and Functions:** 1. **Activation of ATR in response to replication stress**: RFC5 is involved in the activation of the ATR kinase in response to replication stress. 2. **ATP binding and hydrolysis activity**: RFC5 has ATP binding and hydrolysis activity, which is essential for its function in DNA replication and repair. 3. **Base excision repair**: RFC5 is involved in the base excision repair pathway, which repairs damaged DNA bases. 4. **Cell cycle checkpoints**: RFC5 plays a role in regulating the cell cycle checkpoints, particularly in the G2/M checkpoint. 5. **Chromosome maintenance**: RFC5 is involved in maintaining chromosome stability, particularly in the process of chromosome condensation. **Clinical Significance:** 1. **Defective homologous recombination repair**: Dysregulation of RFC5 has been linked to defective homologous recombination repair, which increases the risk of genetic mutations and cancer. 2. **DNA double-strand break repair**: RFC5 is also involved in DNA double-strand break repair, which is essential for maintaining genome stability. 3. **Cancer**: Dysregulation of RFC5 has been implicated in various types of cancer, including breast cancer and colon cancer. 4. **Genetic disorders**: RFC5 has been implicated in genetic disorders such as Fanconi anemia, which is characterized by defective DNA repair and increased risk of cancer. In conclusion, RFC5 is a crucial protein that plays a vital role in DNA replication and repair. Its dysregulation has been linked to various diseases, including cancer and genetic disorders. Further research is needed to fully understand the mechanisms of RFC5 and its role in maintaining genome stability.

Genular Protein ID: 3426554675

Symbol: RFC5_HUMAN

Name: Replication factor C subunit 5

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8441605

Title: Homology in accessory proteins of replicative polymerases -- E. coli to humans.

PubMed ID: 8441605

DOI: 10.1093/nar/21.1.1

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16541075

Title: The finished DNA sequence of human chromosome 12.

PubMed ID: 16541075

DOI: 10.1038/nature04569

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8999859

Title: Replication factor C interacts with the C-terminal side of proliferating cell nuclear antigen.

PubMed ID: 8999859

DOI: 10.1074/jbc.272.3.1769

PubMed ID: 11572977

Title: Purification and characterization of human DNA damage checkpoint Rad complexes.

PubMed ID: 11572977

DOI: 10.1073/pnas.201373498

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

Sequence Information:

  • Length: 340
  • Mass: 38497
  • Checksum: E31E7B8C79933BCE
  • Sequence:
  • METSALKQQE QPAATKIRNL PWVEKYRPQT LNDLISHQDI LSTIQKFINE DRLPHLLLYG 
    PPGTGKTSTI LACAKQLYKD KEFGSMVLEL NASDDRGIDI IRGPILSFAS TRTIFKKGFK 
    LVILDEADAM TQDAQNALRR VIEKFTENTR FCLICNYLSK IIPALQSRCT RFRFGPLTPE 
    LMVPRLEHVV EEEKVDISED GMKALVTLSS GDMRRALNIL QSTNMAFGKV TEETVYTCTG 
    HPLKSDIANI LDWMLNQDFT TAYRNITELK TLKGLALHDI LTEIHLFVHR VDFPSSVRIH 
    LLTKMADIEY RLSVGTNEKI QLSSLIAAFQ VTRDLIVAEA

Genular Protein ID: 388101198

Symbol: Q59GW7_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 351
  • Mass: 39643
  • Checksum: CBE765C9176EE693
  • Sequence:
  • RDDLSGSGHL RLPAMETSAL KQQEQPAATK IRNLPWVEKY RPQTLNDLIS HQDILSTIQK 
    FINEDRLPHL LLYGPPGTGK TSTILACAKQ LYKDKEFGSM VLELNASDDR GIDIIRGPIL 
    SFASTRTIFK KGFKLVILDE ADAMTQDAQN ALRRVIEKFT ENTRFCLICN YLSKIIPALQ 
    SRCTRFRFGP LTPELMVPRL EHVVEEEKVD ISEDGMKALV TLSSGDMRRA LNILQSTNMA 
    FGKVTEETVY TCTGHPLKSD IANILDWMLN QDFTTAYRKL KTLKGLALHD ILTEIHLFVH 
    RVDFPSSVRI HLLTKMADIE YRLSVGTNEK IQLSSLIAAF QVTRDLIVAE A

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.