Details for: SCN1B
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 122.2474
Cell Significance Index: -19.0200 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 73.7847
Cell Significance Index: -18.7200 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 36.3563
Cell Significance Index: -14.7700 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 35.1293
Cell Significance Index: -18.0700 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 15.5644
Cell Significance Index: -14.8600 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 15.4223
Cell Significance Index: -19.0200 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 4.8225
Cell Significance Index: -19.0300 - Cell Name: type II muscle cell (CL0002212)
Fold Change: 3.0313
Cell Significance Index: 48.9100 - Cell Name: type I muscle cell (CL0002211)
Fold Change: 2.7132
Cell Significance Index: 66.2000 - Cell Name: cone retinal bipolar cell (CL0000752)
Fold Change: 2.3846
Cell Significance Index: 18.3800 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 1.9690
Cell Significance Index: 103.3800 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: 1.6254
Cell Significance Index: 99.6500 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 1.3087
Cell Significance Index: 68.1700 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: 0.6781
Cell Significance Index: 14.5000 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.6118
Cell Significance Index: 122.7300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.5911
Cell Significance Index: 112.4800 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 0.5517
Cell Significance Index: 17.6700 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: 0.3303
Cell Significance Index: 22.2100 - Cell Name: L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (CL4023050)
Fold Change: 0.3268
Cell Significance Index: 4.3600 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: 0.2922
Cell Significance Index: 3.3200 - Cell Name: Hofbauer cell (CL3000001)
Fold Change: 0.2318
Cell Significance Index: 1.8900 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.2091
Cell Significance Index: 188.7800 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: 0.2060
Cell Significance Index: 3.5300 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.1850
Cell Significance Index: 66.3500 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: 0.1663
Cell Significance Index: 3.5300 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1616
Cell Significance Index: 15.9900 - Cell Name: OFF midget ganglion cell (CL4033047)
Fold Change: 0.1251
Cell Significance Index: 1.5600 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.1124
Cell Significance Index: 6.7500 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.1106
Cell Significance Index: 12.0300 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.1011
Cell Significance Index: 16.4500 - Cell Name: fallopian tube secretory epithelial cell (CL4030006)
Fold Change: 0.0743
Cell Significance Index: 1.1500 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.0531
Cell Significance Index: 3.4300 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.0366
Cell Significance Index: 25.3500 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 0.0238
Cell Significance Index: 2.7700 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.0169
Cell Significance Index: 1.1700 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0012
Cell Significance Index: -2.2000 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0052
Cell Significance Index: -3.8800 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: -0.0056
Cell Significance Index: -0.1600 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0061
Cell Significance Index: -3.8200 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0066
Cell Significance Index: -3.7400 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.0105
Cell Significance Index: -0.3700 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0111
Cell Significance Index: -20.4800 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0116
Cell Significance Index: -15.8400 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0117
Cell Significance Index: -18.0000 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0149
Cell Significance Index: -10.9000 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0182
Cell Significance Index: -8.2700 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.0220
Cell Significance Index: -0.5500 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0231
Cell Significance Index: -17.5100 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0243
Cell Significance Index: -15.4100 - Cell Name: cell in vitro (CL0001034)
Fold Change: -0.0261
Cell Significance Index: -14.2300 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: -0.0285
Cell Significance Index: -12.5900 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0301
Cell Significance Index: -6.3400 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0332
Cell Significance Index: -1.5500 - Cell Name: neoplastic cell (CL0001063)
Fold Change: -0.0340
Cell Significance Index: -6.7500 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0340
Cell Significance Index: -5.8000 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: -0.0446
Cell Significance Index: -2.0200 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0463
Cell Significance Index: -4.7300 - Cell Name: ON midget ganglion cell (CL4033046)
Fold Change: -0.0491
Cell Significance Index: -0.6200 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0529
Cell Significance Index: -15.2200 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.0568
Cell Significance Index: -1.2300 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: -0.0610
Cell Significance Index: -11.0000 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: -0.0757
Cell Significance Index: -10.4000 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.0767
Cell Significance Index: -2.2000 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0915
Cell Significance Index: -13.3100 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0919
Cell Significance Index: -7.0600 - Cell Name: VIP GABAergic cortical interneuron (CL4023016)
Fold Change: -0.1081
Cell Significance Index: -2.1700 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: -0.1103
Cell Significance Index: -13.5600 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.1112
Cell Significance Index: -4.9200 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.1167
Cell Significance Index: -4.4200 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.1224
Cell Significance Index: -14.4300 - Cell Name: odontoblast (CL0000060)
Fold Change: -0.1261
Cell Significance Index: -16.1700 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.1280
Cell Significance Index: -3.2900 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.1311
Cell Significance Index: -2.7200 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.1368
Cell Significance Index: -3.9100 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.1373
Cell Significance Index: -15.6700 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.1376
Cell Significance Index: -17.7800 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.1721
Cell Significance Index: -3.6700 - Cell Name: retinal bipolar neuron (CL0000748)
Fold Change: -0.1741
Cell Significance Index: -2.1100 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1745
Cell Significance Index: -19.9900 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.1794
Cell Significance Index: -18.6800 - Cell Name: retinal ganglion cell (CL0000740)
Fold Change: -0.1835
Cell Significance Index: -1.5200 - Cell Name: vascular lymphangioblast (CL0005022)
Fold Change: -0.1839
Cell Significance Index: -3.2500 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.1879
Cell Significance Index: -8.1700 - Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
Fold Change: -0.1935
Cell Significance Index: -4.1800 - Cell Name: sst GABAergic cortical interneuron (CL4023017)
Fold Change: -0.1942
Cell Significance Index: -3.8400 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.1977
Cell Significance Index: -15.6600 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.2307
Cell Significance Index: -14.5400 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.2382
Cell Significance Index: -17.7500 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.2458
Cell Significance Index: -7.8300 - Cell Name: photoreceptor cell (CL0000210)
Fold Change: -0.2460
Cell Significance Index: -3.4600 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -0.2509
Cell Significance Index: -12.6800 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.2516
Cell Significance Index: -7.0300 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.2520
Cell Significance Index: -15.4900 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.2547
Cell Significance Index: -11.9700 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.2669
Cell Significance Index: -9.3500 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.3105
Cell Significance Index: -16.1300 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.3213
Cell Significance Index: -18.0300 - Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
Fold Change: -0.3217
Cell Significance Index: -6.7200 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.3337
Cell Significance Index: -13.6700 - Cell Name: keratocyte (CL0002363)
Fold Change: -0.3925
Cell Significance Index: -6.2300
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 1634978912
Symbol: SCN1B_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8394762
Title: The cloning and expression of a sodium channel beta 1-subunit cDNA from human brain.
PubMed ID: 8394762
DOI: 10.1093/hmg/2.6.745
PubMed ID: 8125980
Title: Voltage-gated Na+ channel beta 1 subunit mRNA expressed in adult human skeletal muscle, heart, and brain is encoded by a single gene.
PubMed ID: 8125980
PubMed ID: 7851891
Title: Genomic organization and chromosomal assignment of the human voltage-gated Na+ channel beta 1 subunit gene (SCN1B).
PubMed ID: 7851891
PubMed ID: 14622265
Title: Molecular cloning and functional expression of the human sodium channel beta1B subunit, a novel splicing variant of the beta1 subunit.
PubMed ID: 14622265
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15057824
Title: The DNA sequence and biology of human chromosome 19.
PubMed ID: 15057824
DOI: 10.1038/nature02399
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 15525788
Title: A novel epilepsy mutation in the sodium channel SCN1A identifies a cytoplasmic domain for beta subunit interaction.
PubMed ID: 15525788
PubMed ID: 18464934
Title: Sodium channel beta1 subunit mutations associated with Brugada syndrome and cardiac conduction disease in humans.
PubMed ID: 18464934
DOI: 10.1172/jci33891
PubMed ID: 19710327
Title: A functional null mutation of SCN1B in a patient with Dravet syndrome.
PubMed ID: 19710327
PubMed ID: 21994374
Title: Voltage-gated Na+ channel beta1B: a secreted cell adhesion molecule involved in human epilepsy.
PubMed ID: 21994374
PubMed ID: 26900580
Title: Pathogenic mechanism of recurrent mutations of SCN8A in epileptic encephalopathy.
PubMed ID: 26900580
DOI: 10.1002/acn3.276
PubMed ID: 29992740
Title: A mutation of SCN1B associated with GEFS+ causes functional and maturation defects of the voltage-dependent sodium channel.
PubMed ID: 29992740
DOI: 10.1002/humu.23589
PubMed ID: 30190309
Title: Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1.
PubMed ID: 30190309
PubMed ID: 30765606
Title: Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins.
PubMed ID: 30765606
PubMed ID: 35277491
Title: Structural basis for modulation of human NaV1.3 by clinical drug and selective antagonist.
PubMed ID: 35277491
PubMed ID: 36823201
Title: Structure of human NaV1.6 channel reveals Na+ selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
PubMed ID: 36823201
PubMed ID: 36696443
Title: Cryo-EM structure of human voltage-gated sodium channel Nav1.6.
PubMed ID: 36696443
PubMed ID: 9697698
Title: Febrile seizures and generalized epilepsy associated with a mutation in the Na(+)-channel beta-1 subunit gene SCN1B.
PubMed ID: 9697698
DOI: 10.1038/1252
PubMed ID: 17928445
Title: Modulatory proteins can rescue a trafficking defective epileptogenic Nav1.1 Na+ channel mutant.
PubMed ID: 17928445
PubMed ID: 19808477
Title: Mutations in sodium channel beta1- and beta2-subunits associated with atrial fibrillation.
PubMed ID: 19808477
PubMed ID: 19522081
Title: Mutational analysis of the SCN1A, SCN1B and GABRG2 genes in 150 Italian patients with idiopathic childhood epilepsies.
PubMed ID: 19522081
PubMed ID: 21040232
Title: New mutation c.374C>T and a putative disease-associated haplotype within SCN1B gene in Tunisian families with febrile seizures.
PubMed ID: 21040232
PubMed ID: 23148524
Title: A homozygous mutation of voltage-gated sodium channel beta(I) gene SCN1B in a patient with Dravet syndrome.
PubMed ID: 23148524
DOI: 10.1111/epi.12040
Sequence Information:
- Length: 218
- Mass: 24707
- Checksum: 09B812FA3F9E9018
- Sequence:
MGRLLALVVG AALVSSACGG CVEVDSETEA VYGMTFKILC ISCKRRSETN AETFTEWTFR QKGTEEFVKI LRYENEVLQL EEDERFEGRV VWNGSRGTKD LQDLSIFITN VTYNHSGDYE CHVYRLLFFE NYEHNTSVVK KIHIEVVDKA NRDMASIVSE IMMYVLIVVL TIWLVAEMIY CYKKIAAATE TAAQENASEY LAITSESKEN CTGVQVAE
Genular Protein ID: 1575660461
Symbol: A0A1W2PR05_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11237011
Title: Initial sequencing and analysis of the human genome.
PubMed ID: 11237011
DOI: 10.1038/35057062
PubMed ID: 15057824
Title: The DNA sequence and biology of human chromosome 19.
PubMed ID: 15057824
DOI: 10.1038/nature02399
PubMed ID: 15496913
Title: Finishing the euchromatic sequence of the human genome.
PubMed ID: 15496913
DOI: 10.1038/nature03001
Sequence Information:
- Length: 185
- Mass: 21497
- Checksum: CFE5B8510DC59800
- Sequence:
MTFKILCISC KRRSETNAET FTEWTFRQKG TEEFVKILRY ENEVLQLEED ERFEGRVVWN GSRGTKDLQD LSIFITNVTY NHSGDYECHV YRLLFFENYE HNTSVVKKIH IEVVDKANRD MASIVSEIMM YVLIVVLTIW LVAEMIYCYK KIAAATETAA QENASEYLAI TSESKENCTG VQVAE
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.