Details for: GCNT2
Gene ID: 2651
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: GCNT2
Ensembl ID: ENSG00000111846
Description: glucosaminyl (N-acetyl) transferase 2 (I blood group)
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 21.11rCSI 30.29%PRS 59.56
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CSI 18.65rCSI 30.54%PRS 59.09
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CSI 13.23rCSI 34.19%PRS 64.93
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CSI 11.76rCSI 19.73%PRS 51.29
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CSI 10.75rCSI 7.96%PRS 62.85
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CSI 9.39rCSI 15.1%PRS 53.18
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CSI 9.3rCSI 8.95%PRS 69.8
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CSI 7.33rCSI 16.15%PRS 74.19
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CSI 6.65rCSI 5.85%PRS 58.02
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CSI 6.55rCSI 25.61%PRS 47.3
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CSI 6.44rCSI 7.78%PRS 79.05
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CSI 5.96rCSI 9.82%PRS 75.38
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CSI 5.46rCSI 3.63%PRS 72.91
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CSI 5.42rCSI 8.18%PRS 75.19
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CSI 5.32rCSI 6.45%PRS 53.83
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CSI 5.05rCSI 20.37%PRS 69.45
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CSI 5rCSI 7.73%PRS 68.88
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CSI 4.92rCSI 5.09%PRS 75.63
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CSI 4.53rCSI 11.07%PRS 63.13
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CSI 4.41rCSI 12.79%PRS 59.32
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CSI 4.14rCSI 9.56%PRS 58.24
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CSI 4rCSI 4.98%PRS 71.85
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CSI 3.94rCSI 9.25%PRS 72.65
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CSI 3.84rCSI 7.93%PRS 69.61
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CSI 3.77rCSI 3.12%PRS 69.99
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CSI 3.76rCSI 21.54%PRS 77.34
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CSI 3.73rCSI 10.06%PRS 76.36
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CSI 3.69rCSI 14.36%PRS 72.47
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CSI 3.63rCSI 4.52%PRS 80.6
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CSI 3.53rCSI 3.7%PRS 66.98
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CSI 3.25rCSI 3.48%PRS 70.43
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CSI 3.24rCSI 5.8%PRS 69.47
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CSI 3.05rCSI 6.13%PRS 59.3
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CSI 2.99rCSI 2.32%PRS 73.24
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CSI 2.94rCSI 5.29%PRS 63.19
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CSI 2.92rCSI 4.27%PRS 74.9
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CSI 2.82rCSI 8.36%PRS 79.74
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CSI 2.7rCSI 6.17%PRS 70.7
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CSI 2.69rCSI 4.89%PRS 83.44
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CSI 2.67rCSI 6.96%PRS 70.43
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CSI 2.66rCSI 6.59%PRS 68.82
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CSI 2.66rCSI 3.77%PRS 66.24
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CSI 2.61rCSI 4%PRS 62.58
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CSI 2.6rCSI 5.4%PRS 67.12
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CSI 2.6rCSI 4.61%PRS 41.66
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CSI 2.46rCSI 4.31%PRS 62.52
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CSI 2.31rCSI 5.56%PRS 85.93
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CSI 2.23rCSI 3.05%PRS 38.79
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CSI 2.22rCSI 3.26%PRS 63.18
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CSI 2.18rCSI 6.01%PRS 65.04
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CSI 2.15rCSI 3.08%PRS 72.35
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CSI 2.15rCSI 3.43%PRS 74.27
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CSI 2.1rCSI 10.07%PRS 67.99
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CSI 2.09rCSI 5.6%PRS 61.03
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CSI 2rCSI 3.05%PRS 70.73
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CSI 2rCSI 1.54%PRS 71.76
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CSI 1.99rCSI 3.22%PRS 65.72
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CSI 1.96rCSI 1.96%PRS 63.52
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CSI 1.96rCSI 2.34%PRS 51.09
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CSI 1.95rCSI 1.8%PRS 71.73
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CSI 1.95rCSI 13.92%PRS 69.29
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CSI 1.92rCSI 3.32%PRS 60.49
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CSI 1.77rCSI 11.3%PRS 78.6
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CSI 1.7rCSI 3.88%PRS 65.29
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CSI 1.69rCSI 3.36%PRS 66.66
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CSI 1.68rCSI 2.3%PRS 71.08
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CSI 1.65rCSI 3.94%PRS 70.45
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CSI 1.6rCSI 1.86%PRS 61
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CSI 1.48rCSI 3.26%PRS 80.96
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CSI 1.47rCSI 2.28%PRS 76.48
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CSI 1.46rCSI 2.22%PRS 74.46
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CSI 1.43rCSI 7.67%PRS 79.87
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CSI 1.4rCSI 14.87%PRS 67.38
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CSI 1.36rCSI 3.44%PRS 59.66
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CSI 1.32rCSI 2.5%PRS 80.09
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CSI 1.26rCSI 1.14%PRS 67.34
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CSI 1.25rCSI 3.3%PRS 85.34
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CSI 1.23rCSI 4.74%PRS 82.05
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CSI 1.21rCSI 6.71%PRS 83.07
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CSI 1.16rCSI 3.25%PRS 79.62
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CSI 1.16rCSI 3.87%PRS 54.59
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CSI 1.03rCSI 1.08%PRS 67.77
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CSI 1.03rCSI 1.82%PRS 50.38
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CSI 0.95rCSI 7.72%PRS 63.59
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CSI 0.95rCSI 3.61%PRS 60.57
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CSI 0.94rCSI 1.33%PRS 72.7
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CSI 0.94rCSI 5.85%PRS 61.42
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CSI 0.83rCSI 4.51%PRS 81.87
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CSI 0.72rCSI 4.18%PRS 67.79
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CSI 0.71rCSI 3.74%PRS 77.79
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CSI 0.66rCSI 5.7%PRS 65.94
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CSI 0.61rCSI 2.17%PRS 76.74
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CSI 0.33rCSI 5.17%PRS 82.86
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CSI 0.31rCSI 3.33%PRS 82.12
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 3534698835
Symbol: GNT2A_HUMAN
Name: I-branching enzyme
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8449405
Title: Expression of the developmental I antigen by a cloned human cDNA encoding a member of a beta-1,6-N-acetylglucosaminyltransferase gene family.
PubMed ID: 8449405
DOI: 10.1101/gad.7.3.468
PubMed ID: 7579796
Title: Genomic organization of core 2 and I branching beta-1,6-N-acetylglucosaminyltransferases. Implication for evolution of the beta-1,6-N-acetylglucosaminyltransferase gene family.
PubMed ID: 7579796
PubMed ID: 12424189
Title: The molecular genetics of the human I locus and molecular background explain the partial association of the adult i phenotype with congenital cataracts.
PubMed ID: 12424189
PubMed ID: 12468428
Title: A novel I-branching beta-1,6-N-acetylglucosaminyltransferase involved in human blood group I antigen expression.
PubMed ID: 12468428
PubMed ID: 14672974
Title: Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
PubMed ID: 14672974
DOI: 10.1101/gr.1225204
PubMed ID: 11230166
Title: Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
PubMed ID: 11230166
DOI: 10.1101/gr.gr1547r
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 14574404
Title: The DNA sequence and analysis of human chromosome 6.
PubMed ID: 14574404
DOI: 10.1038/nature02055
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 11739194
Title: Molecular basis of the adult i phenotype and the gene responsible for the expression of the human blood group I antigen.
PubMed ID: 11739194
PubMed ID: 28839118
Title: High-Throughput Genetic Screening of 51 Pediatric Cataract Genes Identifies Causative Mutations in Inherited Pediatric Cataract in South Eastern Australia.
PubMed ID: 28839118
PubMed ID: 29914532
Title: Clinical and genetic characteristics of Chinese patients with familial or sporadic pediatric cataract.
PubMed ID: 29914532
Sequence Information:
- Length: 402
- Mass: 45873
- Checksum: FCA6AE905D78D7D5
- Sequence:
MMGSWKHCLF SASLISALIF VFVYNTELWE NKRFLRAALS NASLLAEACH QIFEGKVFYP TENALKTTLD EATCYEYMVR SHYVTETLSE EEAGFPLAYT VTIHKDFGTF ERLFRAIYMP QNVYCVHLDQ KATDAFKGAV KQLLSCFPNA FLASKKESVV YGGISRLQAD LNCLEDLVAS EVPWKYVINT CGQDFPLKTN REIVQYLKGF KGKNITPGVL PPDHAVGRTK YVHQELLNHK NSYVIKTTKL KTPPPHDMVI YFGTAYVALT RDFANFVLQD QLALDLLSWS KDTYSPDEHF WVTLNRIPGV PGSMPNASWT GNLRAIKWSD MEDRHGGCHG HYVHGICIYG NGDLKWLVNS PSLFANKFEL NTYPLTVECL ELRHRERTLN QSETAIQPSW YF