Details for: LCN2
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 45.71rCSI 66.88%PRS 77.48
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CSI 43.18rCSI 50.08%PRS 78.17
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CSI 30.39rCSI 66.36%PRS 82.07
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CSI 29.03rCSI 28.97%PRS 66.14
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CSI 25.95rCSI 37.4%PRS 81.27
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CSI 22.88rCSI 33.51%PRS 67.42
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CSI 21.23rCSI 16.46%PRS 75.92
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CSI 21.21rCSI 50.35%PRS 74.46
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CSI 18.21rCSI 26.88%PRS 85.02
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CSI 17.65rCSI 26.95%PRS 73.07
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CSI 17.09rCSI 15.03%PRS 60.82
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CSI 16.58rCSI 66.25%PRS 83.66
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CSI 16.42rCSI 15.81%PRS 72.07
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CSI 16.04rCSI 54.22%PRS 73.01
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CSI 15.79rCSI 20.25%PRS 76.55
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CSI 15.75rCSI 20.93%PRS 78.8
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CSI 15.72rCSI 24.97%PRS 82.36
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CSI 14.15rCSI 14.76%PRS 72.34
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CSI 12.88rCSI 11.43%PRS 70.35
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CSI 11.86rCSI 23.07%PRS 75.85
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CSI 10.52rCSI 11.02%PRS 69.57
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CSI 9.83rCSI 11.97%PRS 79.5
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CSI 8.51rCSI 10.48%PRS 80.58
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CSI 8.32rCSI 35.94%PRS 82.44
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CSI 8.05rCSI 8.34%PRS 77.78
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CSI 8.02rCSI 17.06%PRS 80.66
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CSI 7.95rCSI 14.44%PRS 85.09
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CSI 7.94rCSI 11.65%PRS 83.24
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CSI 7.9rCSI 7.61%PRS 64.6
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CSI 7.85rCSI 32.55%PRS 72.26
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CSI 7.73rCSI 10.57%PRS 73.22
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CSI 7.59rCSI 8.78%PRS 63.78
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CSI 7.55rCSI 8.02%PRS 79.5
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CSI 7.47rCSI 6.19%PRS 72.83
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CSI 6.92rCSI 11.16%PRS 73.14
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CSI 6.85rCSI 7.35%PRS 73.08
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CSI 6.52rCSI 42.83%PRS 90.91
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CSI 6.44rCSI 11.49%PRS 83.23
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CSI 6.09rCSI 5.75%PRS 71.77
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CSI 6.02rCSI 8.05%PRS 71.98
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CSI 6rCSI 13.2%PRS 76.74
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CSI 5.64rCSI 34.84%PRS 92.3
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CSI 5.62rCSI 6.61%PRS 74.53
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CSI 5.5rCSI 27.67%PRS 70.93
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CSI 5.37rCSI 58.41%PRS 83.68
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CSI 5.05rCSI 12.77%PRS 78.91
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CSI 4.87rCSI 7.89%PRS 68.14
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CSI 4.8rCSI 53.62%PRS 86.38
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CSI 4.57rCSI 23.09%PRS 90.4
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CSI 4.36rCSI 18.9%PRS 80.93
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CSI 4.27rCSI 23.86%PRS 76.25
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CSI 4.22rCSI 9.62%PRS 67.36
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CSI 4.11rCSI 9.85%PRS 78.96
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CSI 3.98rCSI 24.54%PRS 84.67
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CSI 3.97rCSI 5.73%PRS 80.18
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CSI 3.62rCSI 5.53%PRS 83.09
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CSI 3.16rCSI 8.16%PRS 67.47
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CSI 3.1rCSI 23.31%PRS 85.04
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CSI 2.96rCSI 16.86%PRS 86
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CSI 2.93rCSI 47.14%PRS 86.15
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CSI 2.79rCSI 8.08%PRS 81.41
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CSI 2.75rCSI 15.88%PRS 69.88
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CSI 2.62rCSI 2.36%PRS 69.92
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CSI 2.47rCSI 15.77%PRS 80.5
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CSI 2.46rCSI 5.87%PRS 71.64
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CSI 2.38rCSI 5.88%PRS 71.6
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CSI 2.26rCSI 12.15%PRS 81.95
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CSI 2.11rCSI 4.5%PRS 68.44
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CSI 1.97rCSI 6.89%PRS 82.58
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CSI 1.95rCSI 13.8%PRS 81.18
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CSI 1.95rCSI 11.71%PRS 76.27
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CSI 1.8rCSI 17.77%PRS 82.81
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CSI 1.77rCSI 7.78%PRS 83.56
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CSI 1.72rCSI 4.52%PRS 87.05
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CSI 1.61rCSI 2.31%PRS 74.42
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CSI 1.5rCSI 3.56%PRS 79.71
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CSI 1.36rCSI 31.62%PRS 87.42
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CSI 1.36rCSI 4.82%PRS 78.51
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CSI 1.11rCSI 9.58%PRS 68.21
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CSI 1.09rCSI 5.74%PRS 79.84
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CSI 0.93rCSI 1.42%PRS 81.1
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CSI 0.3rCSI 2.92%PRS 86.08
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CSI 0.24rCSI 6.14%PRS 83.74
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 3848438305
Symbol: NGAL_HUMAN
Name: Lipocalin-2
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8060329
Title: Molecular cloning and expression of a cDNA encoding NGAL: a lipocalin expressed in human neutrophils.
PubMed ID: 8060329
PubMed ID: 9339356
Title: Molecular characterization and pattern of tissue expression of the gene for neutrophil gelatinase-associated lipocalin from humans.
PubMed ID: 9339356
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15164053
Title: DNA sequence and analysis of human chromosome 9.
PubMed ID: 15164053
DOI: 10.1038/nature02465
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7835423
Title: Cloning and expression of human neutrophil lipocalin cDNA derived from bone marrow and ovarian cancer cells.
PubMed ID: 7835423
PubMed ID: 7683678
Title: Isolation and primary structure of NGAL, a novel protein associated with human neutrophil gelatinase.
PubMed ID: 7683678
PubMed ID: 1281792
Title: A 25 kDa alpha 2-microglobulin-related protein is a component of the 125 kDa form of human gelatinase.
PubMed ID: 1281792
PubMed ID: 8298140
Title: Identification of neutrophil gelatinase-associated lipocalin as a novel matrix protein of specific granules in human neutrophils.
PubMed ID: 8298140
PubMed ID: 12453413
Title: An iron delivery pathway mediated by a lipocalin.
PubMed ID: 12453413
PubMed ID: 15084671
PubMed ID: 16335952
Title: Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.
PubMed ID: 16335952
DOI: 10.1021/pr0502065
PubMed ID: 16740002
Title: Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry.
PubMed ID: 16740002
DOI: 10.1021/pr050492k
PubMed ID: 19229297
Title: Transcription and signalling pathways involved in BCR-ABL-mediated misregulation of 24p3 and 24p3R.
PubMed ID: 19229297
PubMed ID: 19159218
Title: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.
PubMed ID: 19159218
DOI: 10.1021/pr8008012
PubMed ID: 27780864
Title: Human Metabolome-derived Cofactors Are Required for the Antibacterial Activity of Siderocalin in Urine.
PubMed ID: 27780864
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 30418175
Title: Insulin receptor signaling regulates renal collecting duct and intercalated cell antibacterial defenses.
PubMed ID: 30418175
DOI: 10.1172/jci98595
PubMed ID: 10684642
Title: Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin.
PubMed ID: 10684642
DOI: 10.1021/bi992215v
PubMed ID: 10339412
Title: The solution structure and dynamics of human neutrophil gelatinase-associated lipocalin.
PubMed ID: 10339412
PubMed ID: 12453412
Title: The neutrophil lipocalin NGAL is a bacteriostatic agent that interferes with siderophore-mediated iron acquisition.
PubMed ID: 12453412
PubMed ID: 15642259
Title: Siderocalin (Lcn 2) also binds carboxymycobactins, potentially defending against mycobacterial infections through iron sequestration.
PubMed ID: 15642259
PubMed ID: 20581821
Title: Iron traffics in circulation bound to a siderocalin (Ngal)-catechol complex.
PubMed ID: 20581821
DOI: 10.1038/nchembio.402
PubMed ID: 21978368
Title: Immune interference in Mycobacterium tuberculosis intracellular iron acquisition through siderocalin recognition of carboxymycobactins.
PubMed ID: 21978368
DOI: 10.1021/cb200331g
Sequence Information:
- Length: 198
- Mass: 22588
- Checksum: CD761805723FEF1E
- Sequence:
MPLGLLWLGL ALLGALHAQA QDSTSDLIPA PPLSKVPLQQ NFQDNQFQGK WYVVGLAGNA ILREDKDPQK MYATIYELKE DKSYNVTSVL FRKKKCDYWI RTFVPGCQPG EFTLGNIKSY PGLTSYLVRV VSTNYNQHAM VFFKKVSQNR EYFKITLYGR TKELTSELKE NFIRFSKSLG LPENHIVFPV PIDQCIDG