Details for: DPF1

Gene ID: 8193

Symbol: DPF1

Ensembl ID: ENSG00000011332

Description: double PHD fingers 1

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: polychromatophilic erythroblast (CL0000550)
    Fold Change: 106.0142
    Cell Significance Index: -16.4900
  • Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
    Fold Change: 62.9230
    Cell Significance Index: -15.9600
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: 2.4831
    Cell Significance Index: 152.2400
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: 2.3022
    Cell Significance Index: 50.4100
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: 1.6520
    Cell Significance Index: 52.9100
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 1.5666
    Cell Significance Index: 33.9400
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 1.1196
    Cell Significance Index: 224.6000
  • Cell Name: epidermal Langerhans cell (CL0002457)
    Fold Change: 0.7722
    Cell Significance Index: -1.6900
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.7247
    Cell Significance Index: 137.9100
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: 0.6252
    Cell Significance Index: 38.4300
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.6044
    Cell Significance Index: 216.8100
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: 0.5431
    Cell Significance Index: 15.5000
  • Cell Name: cortical interneuron (CL0008031)
    Fold Change: 0.4845
    Cell Significance Index: 11.6200
  • Cell Name: epithelial cell of pancreas (CL0000083)
    Fold Change: 0.4837
    Cell Significance Index: 7.9700
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.4668
    Cell Significance Index: 46.1800
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: 0.4367
    Cell Significance Index: 22.9300
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.3949
    Cell Significance Index: 356.5500
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: 0.3405
    Cell Significance Index: 15.0600
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: 0.3236
    Cell Significance Index: 21.7600
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.2641
    Cell Significance Index: 182.6400
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: 0.2324
    Cell Significance Index: 8.8000
  • Cell Name: L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (CL4023050)
    Fold Change: 0.2129
    Cell Significance Index: 2.8400
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.2091
    Cell Significance Index: 34.0100
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.1753
    Cell Significance Index: 19.0700
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.0232
    Cell Significance Index: 1.3900
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.0138
    Cell Significance Index: 0.9600
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 0.0122
    Cell Significance Index: 6.6400
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: 0.0002
    Cell Significance Index: 0.2900
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: 0.0000
    Cell Significance Index: 0.0600
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0012
    Cell Significance Index: -2.1700
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.0017
    Cell Significance Index: -0.0600
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0081
    Cell Significance Index: -15.2000
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: -0.0132
    Cell Significance Index: -0.3800
  • Cell Name: hair follicular keratinocyte (CL2000092)
    Fold Change: -0.0158
    Cell Significance Index: -6.9900
  • Cell Name: eukaryotic cell (CL0000255)
    Fold Change: -0.0160
    Cell Significance Index: -0.7000
  • Cell Name: cerebellar granule cell (CL0001031)
    Fold Change: -0.0169
    Cell Significance Index: -0.2900
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: -0.0183
    Cell Significance Index: -0.3900
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0187
    Cell Significance Index: -13.8800
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: -0.0210
    Cell Significance Index: -0.4400
  • Cell Name: pancreatic PP cell (CL0002275)
    Fold Change: -0.0217
    Cell Significance Index: -13.5200
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0224
    Cell Significance Index: -14.2000
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.0228
    Cell Significance Index: -0.5700
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0272
    Cell Significance Index: -15.3200
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0301
    Cell Significance Index: -13.6600
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: -0.0366
    Cell Significance Index: -6.6000
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0430
    Cell Significance Index: -12.3600
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.0595
    Cell Significance Index: -1.2400
  • Cell Name: odontoblast (CL0000060)
    Fold Change: -0.0612
    Cell Significance Index: -7.8400
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: -0.0657
    Cell Significance Index: -13.0400
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0687
    Cell Significance Index: -9.4300
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.0716
    Cell Significance Index: -2.0000
  • Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
    Fold Change: -0.0749
    Cell Significance Index: -1.5900
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: -0.0768
    Cell Significance Index: -3.4800
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0790
    Cell Significance Index: -16.6300
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: -0.0933
    Cell Significance Index: -11.4700
  • Cell Name: neural cell (CL0002319)
    Fold Change: -0.0934
    Cell Significance Index: -1.0900
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0936
    Cell Significance Index: -15.9900
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: -0.0945
    Cell Significance Index: -11.1500
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: -0.0957
    Cell Significance Index: -1.3700
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0960
    Cell Significance Index: -13.9600
  • Cell Name: sst GABAergic cortical interneuron (CL4023017)
    Fold Change: -0.0986
    Cell Significance Index: -1.9500
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.1074
    Cell Significance Index: -2.7600
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.1091
    Cell Significance Index: -12.7200
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.1155
    Cell Significance Index: -3.6800
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.1165
    Cell Significance Index: -15.0500
  • Cell Name: GABAergic amacrine cell (CL4030027)
    Fold Change: -0.1169
    Cell Significance Index: -1.4500
  • Cell Name: glutamatergic neuron (CL0000679)
    Fold Change: -0.1175
    Cell Significance Index: -1.2800
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.1187
    Cell Significance Index: -6.6600
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: -0.1253
    Cell Significance Index: -7.9000
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.1265
    Cell Significance Index: -4.1400
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.1428
    Cell Significance Index: -16.3600
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.1436
    Cell Significance Index: -14.6700
  • Cell Name: VIP GABAergic cortical interneuron (CL4023016)
    Fold Change: -0.1604
    Cell Significance Index: -3.2200
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.1613
    Cell Significance Index: -16.8000
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.2007
    Cell Significance Index: -14.9600
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.2072
    Cell Significance Index: -15.9000
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.2269
    Cell Significance Index: -7.9500
  • Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
    Fold Change: -0.2342
    Cell Significance Index: -5.0600
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: -0.2392
    Cell Significance Index: -15.4300
  • Cell Name: lung endothelial cell (CL1001567)
    Fold Change: -0.2432
    Cell Significance Index: -12.6700
  • Cell Name: neuron (CL0000540)
    Fold Change: -0.2598
    Cell Significance Index: -2.4600
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.2752
    Cell Significance Index: -4.6100
  • Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
    Fold Change: -0.2814
    Cell Significance Index: -7.0200
  • Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
    Fold Change: -0.2865
    Cell Significance Index: -5.9800
  • Cell Name: neuroblast (sensu Vertebrata) (CL0000031)
    Fold Change: -0.2951
    Cell Significance Index: -1.9200
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.2994
    Cell Significance Index: -14.0700
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.3108
    Cell Significance Index: -14.4900
  • Cell Name: GABAergic neuron (CL0000617)
    Fold Change: -0.3170
    Cell Significance Index: -4.0000
  • Cell Name: radial glial cell (CL0000681)
    Fold Change: -0.3219
    Cell Significance Index: -1.9100
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: -0.3300
    Cell Significance Index: -17.1500
  • Cell Name: cerebral cortex neuron (CL0010012)
    Fold Change: -0.3489
    Cell Significance Index: -3.3200
  • Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
    Fold Change: -0.3679
    Cell Significance Index: -12.7900
  • Cell Name: skeletal muscle myoblast (CL0000515)
    Fold Change: -0.3679
    Cell Significance Index: -4.0000
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -0.3852
    Cell Significance Index: -14.1400
  • Cell Name: sncg GABAergic cortical interneuron (CL4023015)
    Fold Change: -0.4344
    Cell Significance Index: -8.5500
  • Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
    Fold Change: -0.4475
    Cell Significance Index: -11.1600
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -0.4526
    Cell Significance Index: -11.9000
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.4801
    Cell Significance Index: -14.1400
  • Cell Name: caudal ganglionic eminence derived cortical interneuron (CL4023064)
    Fold Change: -0.5040
    Cell Significance Index: -10.0500
  • Cell Name: fibroblast of mammary gland (CL0002555)
    Fold Change: -0.5121
    Cell Significance Index: -14.6800

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** 1. **Conserved domain**: DPF1 contains a conserved PHD (proline, histidine, and aspartate) domain, which is a characteristic feature of proteins involved in chromatin remodeling and transcriptional regulation. 2. **Multiple cellular expressions**: DPF1 is expressed in various cell types, including neurons, epithelial cells, and immune cells, highlighting its importance in multiple cellular processes. 3. **Association with chromatin remodeling**: DPF1 is a component of the BAF45B protein complex, which is involved in chromatin remodeling and transcriptional regulation. 4. **Involvement in DNA repair**: DPF1 is involved in the regulation of double-strand break repair, a critical process for maintaining genomic stability. **Pathways and Functions** 1. **Apoptotic process**: DPF1 is involved in the regulation of apoptosis, a process that eliminates damaged or unwanted cells. 2. **Chromatin remodeling**: The BAF45B protein complex, which contains DPF1, is involved in chromatin remodeling, a process that regulates gene expression by altering chromatin structure. 3. **Cell differentiation**: DPF1 is involved in the regulation of cell differentiation, a process that determines the fate of a cell. 4. **DNA repair**: DPF1 is involved in the regulation of double-strand break repair, a process that maintains genomic stability. 5. **Transcriptional regulation**: DPF1 is involved in the regulation of transcription by RNA polymerase II, a process that regulates gene expression. **Clinical Significance** 1. **Neurological disorders**: Alterations in DPF1 expression have been linked to various neurological disorders, including autism spectrum disorder and schizophrenia. 2. **Cancer**: DPF1 is involved in the regulation of apoptosis and DNA repair, and alterations in its expression have been linked to cancer development and progression. 3. **Immunological disorders**: DPF1 is expressed in immune cells and is involved in the regulation of immune responses, making it a potential target for immunological disorders. 4. **Neurodevelopmental disorders**: DPF1 is involved in the regulation of neuronal development and function, and alterations in its expression have been linked to neurodevelopmental disorders, including epilepsy and Parkinson's disease. In conclusion, the DPF1 gene plays a critical role in various cellular processes, including apoptosis, cell differentiation, and DNA repair. Its involvement in chromatin remodeling and transcriptional regulation highlights its importance in maintaining cellular homeostasis. Further studies are needed to fully understand the clinical significance of DPF1 and its potential as a therapeutic target for various diseases.

Genular Protein ID: 1373720917

Symbol: DPF1_HUMAN

Name: BRG1-associated factor 45B

UniProtKB Accession Codes:

Q92782 B3KSY8 Q08AJ0

Database IDs:

AGR 1 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 BioMuta 1 CCDS 3 CDD 2 CTD 1 ChEBI 16 ChiTaRS 1 ComplexPortal 4 DMDM 1 DNASU 1 DisGeNET 1 EMBL 5 Ensembl 4 ExpressionAtlas 1 GO 16 Gene3D 2 GeneCards 1 GeneTree 1 GenomeRNAi 1 GlyGen 1 HGNC 1 HPA 1 InParanoid 1 IntAct 1 InterPro 7 KEGG 1 MANE-Select 1 MIM 1 MINT 1 MassIVE 1 NCBI Taxonomy 1 OpenTargets 1 OrthoDB 1 PANTHER 2 PRO 1 PROSITE 4 PathwayCommons 1 PeptideAtlas 1 Pfam 2 PharmGKB 1 Pharos 1 PhosphoSitePlus 1 PhylomeDB 1 Proteomes 1 ProteomicsDB 3 Pumba 1 RNAct 1 Reactome 2 RefSeq 4 SMART 2 SMR 1 STRING 1 SUPFAM 2 SignaLink 1 SwissPalm 1 UCSC 1 VEuPathDB 1 iPTMnet 1 jPOST 1 neXtProt 1

Citations:

PubMed ID: 8812431

Title: The d4 gene family in the human genome.

PubMed ID: 8812431

DOI: 10.1006/geno.1996.0440

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 25755297

Title: System-wide analysis of SUMOylation dynamics in response to replication stress reveals novel small ubiquitin-like modified target proteins and acceptor lysines relevant for genome stability.

PubMed ID: 25755297

DOI: 10.1074/mcp.o114.044792

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

DOI: 10.1038/nsmb.3366

Sequence Information:

  • Length: 387
  • Mass: 44128
  • Checksum: D8D63199D4915DEE
  • Sequence:
    • MATVIPGPLS LGEDFYREAI EHCRSYNARL CAERSLRLPF LDSQTGVAQN NCYIWMEKTH 
RGPGLAPGQI YTYPARCWRK KRRLNILEDP RLRPCEYKID CEAPLKKEGG LPEGPVLEAL 
LCAETGEKKI ELKEEETIMD CQKQQLLEFP HDLEVEDLED DIPRRKNRAK GKAYGIGGLR 
KRQDTASLED RDKPYVCDIC GKRYKNRPGL SYHYTHTHLA EEEGEENAER HALPFHRKNN 
HKQFYKELAW VPEAQRKHTA KKAPDGTVIP NGYCDFCLGG SKKTGCPEDL ISCADCGRSG 
HPSCLQFTVN MTAAVRTYRW QCIECKSCSL CGTSENDDQL LFCDDCDRGY HMYCLSPPMA 
EPPEGSWSCH LCLRHLKEKA SAYITLT

Genular Protein ID: 2337905670

Symbol: E9PDV3_HUMAN

Name: N/A

UniProtKB Accession Codes:

E9PDV3

Database IDs:

ARBA 7 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 ChiTaRS 1 DNASU 1 DisGeNET 1 EMBL 1 Ensembl 2 ExpressionAtlas 1 GO 2 Gene3D 2 GeneTree 1 HGNC 1 IntAct 1 InterPro 7 MassIVE 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 5 PROSITE-ProRule 1 PeptideAtlas 2 Pfam 2 Proteomes 2 ProteomicsDB 2 RefSeq 1 SMART 2 SMR 1 SUPFAM 2 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 25755297

Title: System-wide analysis of SUMOylation dynamics in response to replication stress reveals novel small ubiquitin-like modified target proteins and acceptor lysines relevant for genome stability.

PubMed ID: 25755297

DOI: 10.1074/mcp.O114.044792

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

Sequence Information:

  • Length: 398
  • Mass: 45285
  • Checksum: 02F40A4EE4AEAB63
  • Sequence:
    • MATAIQNPLK SLGEDFYREA IEHCRSYNAR LCAERSLRLP FLDSQTGVAQ NNCYIWMEKT 
HRGPGLAPGQ IYTYPARCWR KKRRLNILED PRLRPCEYKI DCEAPLKKEG GLPEGPVLEA 
LLCAETGEKK IELKEEETIM DCQKQQLLEF PHDLEVEDLE DDIPRRKNRA KGKAYGIGGL 
RKRQDTASLE DRDKPYVCDI CGKRYKNRPG LSYHYTHTHL AEEEGEENAE RHALPFHRKN 
NHKQFYKELA WVPEAQRKHT AKKAPDGTVI PNGYCDFCLG GSKKTGCPED LISCADCGRS 
GHPSCLQFTV NMTAAVRTYR WQCIECKSCS LCGTSENDGA SWAGLTPQDQ LLFCDDCDRG 
YHMYCLSPPM AEPPEGSWSC HLCLRHLKEK ASAYITLT

Genular Protein ID: 2327699767

Symbol: Q6PJ73_HUMAN

Name: N/A

UniProtKB Accession Codes:

Q6PJ73

Database IDs:

ARBA 7 AlphaFoldDB 1 BioGRID-ORCS 1 CDD 2 CTD 1 ChiTaRS 1 DNASU 1 DisGeNET 1 EMBL 2 GO 6 Gene3D 2 InterPro 7 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 5 PROSITE-ProRule 1 PeptideAtlas 1 Pfam 2 PharmGKB 1 RefSeq 1 SAM 1 SMART 2 SUPFAM 2

Citations:

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

  • Length: 414
  • Mass: 47481
  • Checksum: 53A480968BFF601E
  • Sequence:
    • QSGRRRPGWA RARRQRRPGP EAAQPSGPWP PPFRTRSSRE DFYREAIEHC RSYNARLCAE 
RSLRLPFLDS QTGVAQNNCY IWMEKTHRGP GLAPGQIYTY PARCWRKKRR LNILEDPRLR 
PCEYKIDCEA PLKKEGGLPE GPVLEALLCA ETGEKKIELK EEETIMDCQK QQLLEFPHDL 
EVEDLEDDIP RRKNRAKGKA YGIGGLRKRQ DTASLEDRDK PYVCDICGKR YKNRPGLSYH 
YTHTHLAEEE GEENAERHAL PFHRKNNHKQ FYKELAWVPE AQRKHTAKKA PDGTVIPNGY 
CDFCLGGSKK TGCPEDLISC ADCGRSGHPS CLQFTVNMTA AVRTYRWQCI ECKSCSLCGT 
SENDDQLLFC DDCDRGYHMY CLSPPMAEPP EGSWSCHLCL RHLKEKASAY ITLT

Genular Protein ID: 1205954103

Symbol: C8C3P2_HUMAN

Name: N/A

UniProtKB Accession Codes:

C8C3P2

Database IDs:

ARBA 7 Antibodypedia 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 ChiTaRS 1 DNASU 1 DisGeNET 1 EMBL 3 Ensembl 2 GO 2 Gene3D 2 GeneTree 1 HGNC 1 InterPro 7 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 5 PROSITE-ProRule 1 PaxDb 1 PeptideAtlas 1 Pfam 2 Proteomes 2 ProteomicsDB 1 RefSeq 1 SMART 2 SUPFAM 2 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 25755297

Title: System-wide analysis of SUMOylation dynamics in response to replication stress reveals novel small ubiquitin-like modified target proteins and acceptor lysines relevant for genome stability.

PubMed ID: 25755297

DOI: 10.1074/mcp.O114.044792

PubMed ID: 28112733

Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

PubMed ID: 28112733

Sequence Information:

  • Length: 397
  • Mass: 45097
  • Checksum: 356B5146C8A3049F
  • Sequence:
    • MATVIPGPLS LGEDFYREAI EHCRSYNARL CAERSLRLPF LDSQTGVAQN NCYIWMEKTH 
RGPGLAPGQI YTYPARCWRK KRRLNILEDP RLRPCEYKID CEAPLKKEGG LPEGPVLEAL 
LCAETGEKKI ELKEEETIMD CQKQQLLEFP HDLEVEDLED DIPRRKNRAK GKAYGIGGLR 
KRQDTASLED RDKPYVCDIC GKRYKNRPGL SYHYTHTHLA EEEGEENAER HALPFHRKNN 
HKQFYKELAW VPEAQRKHTA KKAPDGTVIP NGYCDFCLGG SKKTGCPEDL ISCADCGRSG 
HPSCLQFTVN MTAAVRTYRW QCIECKSCSL CGTSENDGAS WAGLTPQDQL LFCDDCDRGY 
HMYCLSPPMA EPPEGSWSCH LCLRHLKEKA SAYITLT

Genular Protein ID: 919298146

Symbol: A0A8I5QL29_HUMAN

Name: N/A

UniProtKB Accession Codes:

A0A8I5QL29

Database IDs:

ARBA 7 CDD 2 CTD 1 DisGeNET 1 EMBL 1 Ensembl 2 GO 2 Gene3D 2 GeneTree 1 HGNC 1 InterPro 7 KEGG 1 NCBI Taxonomy 1 OMA 1 PANTHER 2 PROSITE 5 PROSITE-ProRule 1 PeptideAtlas 2 Pfam 2 Proteomes 2 ProteomicsDB 1 RefSeq 1 SAM 1 SMART 2 SMR 1 SUPFAM 2

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

Sequence Information:

  • Length: 414
  • Mass: 46785
  • Checksum: 343C21142565D5FF
  • Sequence:
    • MGGLSARPTA GRTDPAGTCW GQDPGSKMAT VIPGPLSLGE DFYREAIEHC RSYNARLCAE 
RSLRLPFLDS QTGVAQNNCY IWMEKTHRGP GLAPGQIYTY PARCWRKKRR LNILEDPRLR 
PCEYKIDCEA PLKKEGGLPE GPVLEALLCA ETGEKKIELK EEETIMDCQK QQLLEFPHDL 
EVEDLEDDIP RRKNRAKGKA YGIGGLRKRQ DTASLEDRDK PYVCDICGKR YKNRPGLSYH 
YTHTHLAEEE GEENAERHAL PFHRKNNHKQ FYKELAWVPE AQRKHTAKKA PDGTVIPNGY 
CDFCLGGSKK TGCPEDLISC ADCGRSGHPS CLQFTVNMTA AVRTYRWQCI ECKSCSLCGT 
SENDDQLLFC DDCDRGYHMY CLSPPMAEPP EGSWSCHLCL RHLKEKASAY ITLT

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.