Details for: VPS41
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 303.3201
Cell Significance Index: -47.1800 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 181.2387
Cell Significance Index: -45.9700 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 104.2102
Cell Significance Index: -49.2000 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 96.3183
Cell Significance Index: -39.1300 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 87.4247
Cell Significance Index: -44.9700 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 41.1105
Cell Significance Index: -39.2500 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 39.2958
Cell Significance Index: -48.4500 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 16.9662
Cell Significance Index: -45.4500 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 15.8980
Cell Significance Index: -48.8300 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 12.5469
Cell Significance Index: -27.4600 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 12.3807
Cell Significance Index: -48.8600 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 2.3693
Cell Significance Index: 475.2700 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 2.0864
Cell Significance Index: 339.3400 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 1.4790
Cell Significance Index: 83.0000 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 1.2869
Cell Significance Index: 461.6000 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 1.2464
Cell Significance Index: 247.3500 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: 1.2248
Cell Significance Index: 46.3800 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: 1.1992
Cell Significance Index: 53.0500 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 1.1284
Cell Significance Index: 69.3600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.0913
Cell Significance Index: 118.7000 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.9869
Cell Significance Index: 59.2500 - Cell Name: cortical interneuron (CL0008031)
Fold Change: 0.8527
Cell Significance Index: 20.4500 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.6960
Cell Significance Index: 481.3800 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.6821
Cell Significance Index: 122.9700 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.5379
Cell Significance Index: 66.1400 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.5153
Cell Significance Index: 13.7600 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.4629
Cell Significance Index: 35.5300 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: 0.4294
Cell Significance Index: 28.8800 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: 0.4128
Cell Significance Index: 11.7800 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.3296
Cell Significance Index: 180.0100 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.3093
Cell Significance Index: 6.7000 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.2866
Cell Significance Index: 258.7500 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.2567
Cell Significance Index: 483.3600 - Cell Name: corneal endothelial cell (CL0000132)
Fold Change: 0.2333
Cell Significance Index: 3.5500 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.2167
Cell Significance Index: 29.7700 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.1971
Cell Significance Index: 5.6800 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.1605
Cell Significance Index: 296.0400 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.1391
Cell Significance Index: 214.1800 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.1248
Cell Significance Index: 8.6300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.1104
Cell Significance Index: 21.0100 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1008
Cell Significance Index: 44.5800 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0946
Cell Significance Index: 60.1100 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.0809
Cell Significance Index: 36.7100 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.0547
Cell Significance Index: 2.4800 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0546
Cell Significance Index: 74.2600 - Cell Name: preadipocyte (CL0002334)
Fold Change: 0.0523
Cell Significance Index: 1.0200 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 0.0369
Cell Significance Index: 1.9200 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.0362
Cell Significance Index: 1.8800 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.0162
Cell Significance Index: 0.4400 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.0035
Cell Significance Index: 0.6000 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.0004
Cell Significance Index: 0.0400 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0166
Cell Significance Index: -12.2900 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0174
Cell Significance Index: -10.8600 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0189
Cell Significance Index: -13.8300 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0302
Cell Significance Index: -1.4100 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0439
Cell Significance Index: -33.2500 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0538
Cell Significance Index: -6.3500 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0671
Cell Significance Index: -37.8500 - Cell Name: decidual cell (CL2000002)
Fold Change: -0.0882
Cell Significance Index: -1.4200 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.0901
Cell Significance Index: -3.1700 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0979
Cell Significance Index: -10.0000 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.1005
Cell Significance Index: -2.8100 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -0.1088
Cell Significance Index: -2.3300 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1296
Cell Significance Index: -27.3000 - Cell Name: odontoblast (CL0000060)
Fold Change: -0.1327
Cell Significance Index: -17.0100 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1431
Cell Significance Index: -41.1700 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.1474
Cell Significance Index: -21.4200 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.2228
Cell Significance Index: -28.7800 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.2323
Cell Significance Index: -14.9900 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.2324
Cell Significance Index: -4.9500 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.2357
Cell Significance Index: -4.0400 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.2379
Cell Significance Index: -27.7200 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.2403
Cell Significance Index: -15.1500 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.2572
Cell Significance Index: -29.4700 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.2591
Cell Significance Index: -29.5800 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.3038
Cell Significance Index: -14.2800 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3409
Cell Significance Index: -35.5000 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.3692
Cell Significance Index: -8.0900 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.3765
Cell Significance Index: -28.0600 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.3882
Cell Significance Index: -3.5800 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.4053
Cell Significance Index: -21.2800 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.4574
Cell Significance Index: -6.2400 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4763
Cell Significance Index: -37.7200 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.4876
Cell Significance Index: -12.8200 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: -0.5063
Cell Significance Index: -35.8100 - Cell Name: OFF midget ganglion cell (CL4033047)
Fold Change: -0.5092
Cell Significance Index: -6.3500 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.5409
Cell Significance Index: -17.7100 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.5777
Cell Significance Index: -18.4000 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.5973
Cell Significance Index: -12.3900 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.6560
Cell Significance Index: -21.0100 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.6626
Cell Significance Index: -11.0900 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.6686
Cell Significance Index: -14.1900 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.6833
Cell Significance Index: -17.0800 - Cell Name: ON midget ganglion cell (CL4033046)
Fold Change: -0.6901
Cell Significance Index: -8.7100 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.7001
Cell Significance Index: -42.9200 - Cell Name: peg cell (CL4033014)
Fold Change: -0.7237
Cell Significance Index: -16.7200 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.7324
Cell Significance Index: -25.4500 - Cell Name: midget ganglion cell of retina (CL4023188)
Fold Change: -0.7363
Cell Significance Index: -7.6700 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: -0.7495
Cell Significance Index: -10.7800 - Cell Name: sst GABAergic cortical interneuron (CL4023017)
Fold Change: -0.7743
Cell Significance Index: -15.3100
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 1916127755
Symbol: VPS41_HUMAN
Name: Vacuolar protein sorting-associated protein 41 homolog
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 9159129
Title: Characterization of VPS41, a gene required for vacuolar trafficking and high-affinity iron transport in yeast.
PubMed ID: 9159129
PubMed ID: 12853948
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7596406
Title: Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease.
PubMed ID: 7596406
DOI: 10.1038/375754a0
PubMed ID: 20434987
Title: Identification of the switch in early-to-late endosome transition.
PubMed ID: 20434987
PubMed ID: 19850127
Title: VPS41, a protein involved in lysosomal trafficking, is protective in Caenorhabditis elegans and mammalian cellular models of Parkinson's disease.
PubMed ID: 19850127
PubMed ID: 21802320
Title: Lysosomal trafficking, antigen presentation, and microbial killing are controlled by the Arf-like GTPase Arl8b.
PubMed ID: 21802320
PubMed ID: 21411634
Title: Clathrin-dependent mechanisms modulate the subcellular distribution of class C Vps/HOPS tether subunits in polarized and nonpolarized cells.
PubMed ID: 21411634
PubMed ID: 22323726
Title: Functional analysis of VPS41-mediated neuroprotection in Caenorhabditis elegans and mammalian models of Parkinson's disease.
PubMed ID: 22323726
PubMed ID: 24210660
Title: Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway.
PubMed ID: 24210660
PubMed ID: 23351085
Title: Tethering complexes in the endocytic pathway: CORVET and HOPS.
PubMed ID: 23351085
DOI: 10.1111/febs.12151
PubMed ID: 23322049
Title: hVps41 and VAMP7 function in direct TGN to late endosome transport of lysosomal membrane proteins.
PubMed ID: 23322049
DOI: 10.1038/ncomms2360
PubMed ID: 23167963
Title: The HOPS proteins hVps41 and hVps39 are required for homotypic and heterotypic late endosome fusion.
PubMed ID: 23167963
DOI: 10.1111/tra.12027
PubMed ID: 25445562
Title: RILP interacts with HOPS complex via VPS41 subunit to regulate endocytic trafficking.
PubMed ID: 25445562
DOI: 10.1038/srep07282
PubMed ID: 25908847
Title: The small GTPase Arl8b regulates assembly of the mammalian HOPS complex on lysosomes.
PubMed ID: 25908847
DOI: 10.1242/jcs.162651
PubMed ID: 25783203
Title: Recruitment of VPS33A to HOPS by VPS16 Is Required for Lysosome Fusion with Endosomes and Autophagosomes.
PubMed ID: 25783203
DOI: 10.1111/tra.12283
PubMed ID: 28325809
Title: The Rab7 effector PLEKHM1 binds Arl8b to promote cargo traffic to lysosomes.
PubMed ID: 28325809
PubMed ID: 31806350
Title: The ER-Localized Transmembrane Protein TMEM39A/SUSR2 Regulates Autophagy by Controlling the Trafficking of the PtdIns(4)P Phosphatase SAC1.
PubMed ID: 31806350
PubMed ID: 32808683
Title: Loss-of-Function Variants in HOPS Complex Genes VPS16 and VPS41 Cause Early Onset Dystonia Associated with Lysosomal Abnormalities.
PubMed ID: 32808683
DOI: 10.1002/ana.25879
PubMed ID: 33422265
Title: ORF3a of the COVID-19 virus SARS-CoV-2 blocks HOPS complex-mediated assembly of the SNARE complex required for autolysosome formation.
PubMed ID: 33422265
PubMed ID: 33764426
Title: Bi-allelic variants in HOPS complex subunit VPS41 cause cerebellar ataxia and abnormal membrane trafficking.
PubMed ID: 33764426
PubMed ID: 33851776
Title: Neurodegenerative VPS41 variants inhibit HOPS function and mTORC1-dependent TFEB/TFE3 regulation.
PubMed ID: 33851776
Sequence Information:
- Length: 854
- Mass: 98566
- Checksum: 037577D5FA3A18A0
- Sequence:
MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC MTVHDKFLAL GTHYGKVYLL DVQGNITQKF DVSPVKINQI SLDESGEHMG VCSEDGKVQV FGLYSGEEFH ETFDCPIKII AVHPHFVRSS CKQFVTGGKK LLLFERSWMN RWKSAVLHEG EGNIRSVKWR GHLIAWANNM GVKIFDIISK QRITNVPRDD ISLRPDMYPC SLCWKDNVTL IIGWGTSVKV CSVKERHASE MRDLPSRYVE IVSQFETEFY ISGLAPLCDQ LVVLSYVKEI SEKTEREYCA RPRLDIIQPL SETCEEISSD ALTVRGFQEN ECRDYHLEYS EGESLFYIVS PRDVVVAKER DQDDHIDWLL EKKKYEEALM AAEISQKNIK RHKILDIGLA YINHLVERGD YDIAARKCQK ILGKNAALWE YEVYKFKEIG QLKAISPYLP RGDPVLKPLI YEMILHEFLE SDYEGFATLI REWPGDLYNN SVIVQAVRDH LKKDSQNKTL LKTLAELYTY DKNYGNALEI YLTLRHKDVF QLIHKHNLFS SIKDKIVLLM DFDSEKAVDM LLDNEDKISI KKVVEELEDR PELQHVYLHK LFKRDHHKGQ RYHEKQISLY AEYDRPNLLP FLRDSTHCPL EKALEICQQR NFVEETVYLL SRMGNSRSAL KMIMEELHDV DKAIEFAKEQ DDGELWEDLI LYSIDKPPFI TGLLNNIGTH VDPILLIHRI KEGMEIPNLR DSLVKILQDY NLQILLREGC KKILVADSLS LLKKMHRTQM KGVLVDEENI CESCLSPILP SDAAKPFSVV VFHCRHMFHK ECLPMPSMNS AAQFCNICSA KNRGPGSAIL EMKK
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.