Details for: KDM3B
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 268.9893
Cell Significance Index: -41.8400 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 166.4542
Cell Significance Index: -42.2200 - Cell Name: embryonic stem cell (CL0002322)
Fold Change: 97.7066
Cell Significance Index: -40.2500 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 95.0177
Cell Significance Index: -44.8600 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 90.4600
Cell Significance Index: -36.7500 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 81.6509
Cell Significance Index: -42.0000 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 38.5444
Cell Significance Index: -36.8000 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 35.3297
Cell Significance Index: -43.5600 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 15.9434
Cell Significance Index: -42.7100 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 12.4258
Cell Significance Index: -27.2000 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 11.1732
Cell Significance Index: -44.0900 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 1.6279
Cell Significance Index: 22.2100 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.5940
Cell Significance Index: 319.7600 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 1.5357
Cell Significance Index: 304.7600 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 1.4829
Cell Significance Index: 83.2100 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 1.2077
Cell Significance Index: 131.3700 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 1.1807
Cell Significance Index: 192.0400 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 1.0993
Cell Significance Index: 27.4800 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.9682
Cell Significance Index: 74.3000 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.9607
Cell Significance Index: 57.6800 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.8797
Cell Significance Index: 315.5400 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.8538
Cell Significance Index: 23.8600 - Cell Name: preadipocyte (CL0002334)
Fold Change: 0.8111
Cell Significance Index: 15.8300 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.6003
Cell Significance Index: 41.5200 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.5560
Cell Significance Index: 16.0200 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 0.5408
Cell Significance Index: 28.1700 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: 0.5053
Cell Significance Index: 22.3500 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.4714
Cell Significance Index: 84.9700 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: 0.4559
Cell Significance Index: 11.7200 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: 0.4324
Cell Significance Index: 16.3800 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.4122
Cell Significance Index: 285.0600 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.3996
Cell Significance Index: 49.1400 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.3729
Cell Significance Index: 23.5100 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 0.3434
Cell Significance Index: 21.1100 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: 0.3226
Cell Significance Index: 21.6900 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.2923
Cell Significance Index: 13.2500 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.2796
Cell Significance Index: 152.7100 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.2384
Cell Significance Index: 45.3700 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.2037
Cell Significance Index: 27.9700 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.1616
Cell Significance Index: 4.3300 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.1594
Cell Significance Index: 300.0700 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1421
Cell Significance Index: 62.8400 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.1033
Cell Significance Index: 3.6300 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: 0.0939
Cell Significance Index: 1.6100 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.0827
Cell Significance Index: 127.3200 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.0802
Cell Significance Index: 36.3900 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0800
Cell Significance Index: 50.8200 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.0796
Cell Significance Index: 146.7300 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.0795
Cell Significance Index: 7.8600 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.0570
Cell Significance Index: 2.9600 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0454
Cell Significance Index: 61.7100 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.0424
Cell Significance Index: 2.7400 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.0397
Cell Significance Index: 1.8500 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.0052
Cell Significance Index: -0.1400 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.0062
Cell Significance Index: -0.1400 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0114
Cell Significance Index: -1.6600 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0317
Cell Significance Index: -23.2700 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0387
Cell Significance Index: -6.6000 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0401
Cell Significance Index: -4.7300 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0409
Cell Significance Index: -30.2900 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0464
Cell Significance Index: -35.1500 - Cell Name: odontoblast (CL0000060)
Fold Change: -0.0468
Cell Significance Index: -6.0000 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0727
Cell Significance Index: -41.0000 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0759
Cell Significance Index: -47.3900 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0913
Cell Significance Index: -4.2900 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1139
Cell Significance Index: -11.6300 - Cell Name: fibroblast of cardiac tissue (CL0002548)
Fold Change: -0.1201
Cell Significance Index: -1.7200 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1319
Cell Significance Index: -37.9600 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.1342
Cell Significance Index: -15.6400 - Cell Name: type I muscle cell (CL0002211)
Fold Change: -0.2057
Cell Significance Index: -5.0200 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.2116
Cell Significance Index: -27.3400 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.2143
Cell Significance Index: -4.5700 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.2203
Cell Significance Index: -46.4100 - Cell Name: cardiac muscle cell (CL0000746)
Fold Change: -0.2262
Cell Significance Index: -3.3400 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -0.2364
Cell Significance Index: -5.6700 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.2417
Cell Significance Index: -27.6900 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: -0.2834
Cell Significance Index: -20.0400 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.2835
Cell Significance Index: -3.3800 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -0.2861
Cell Significance Index: -6.1200 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3113
Cell Significance Index: -32.4200 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.3323
Cell Significance Index: -24.7700 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.3381
Cell Significance Index: -8.8900 - Cell Name: Hofbauer cell (CL3000001)
Fold Change: -0.3777
Cell Significance Index: -3.0800 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.4087
Cell Significance Index: -8.9500 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: -0.4366
Cell Significance Index: -5.4200 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.4390
Cell Significance Index: -14.0600 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4640
Cell Significance Index: -36.7500 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.4859
Cell Significance Index: -13.2300 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: -0.5069
Cell Significance Index: -7.2900 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.5264
Cell Significance Index: -27.6400 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.5800
Cell Significance Index: -20.1600 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.5877
Cell Significance Index: -16.7700 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.6118
Cell Significance Index: -9.2200 - Cell Name: tuft cell of small intestine (CL0009080)
Fold Change: -0.6523
Cell Significance Index: -6.5800 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.6610
Cell Significance Index: -14.0300 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.7105
Cell Significance Index: -43.5600 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.7188
Cell Significance Index: -12.0300 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.7407
Cell Significance Index: -23.5900 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.7547
Cell Significance Index: -6.9500 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.7598
Cell Significance Index: -24.8800
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 2042928557
Symbol: KDM3B_HUMAN
Name: Lysine-specific demethylase 3B
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11087669
Title: cDNA cloning and genomic structure of three genes localized to human chromosome band 5q31 encoding potential nuclear proteins.
PubMed ID: 11087669
PubMed ID: 11687974
Title: A novel nuclear protein, 5qNCA (LOC51780) is a candidate for the myeloid leukemia tumor suppressor gene on chromosome 5 band q31.
PubMed ID: 11687974
PubMed ID: 10470851
Title: Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.
PubMed ID: 10470851
PubMed ID: 12168954
Title: Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones.
PubMed ID: 12168954
PubMed ID: 15372022
Title: The DNA sequence and comparative analysis of human chromosome 5.
PubMed ID: 15372022
DOI: 10.1038/nature02919
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 16603237
Title: JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor.
PubMed ID: 16603237
PubMed ID: 17081983
Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
PubMed ID: 17081983
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 19690332
Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
PubMed ID: 19690332
PubMed ID: 19608861
Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.
PubMed ID: 19608861
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 22814378
Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
PubMed ID: 22814378
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 28112733
Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.
PubMed ID: 28112733
DOI: 10.1038/nsmb.3366
PubMed ID: 30929739
Title: De Novo and Inherited Pathogenic Variants in KDM3B Cause Intellectual Disability, Short Stature, and Facial Dysmorphism.
PubMed ID: 30929739
Sequence Information:
- Length: 1761
- Mass: 191581
- Checksum: FB900FCBF0675CD8
- Sequence:
MADAAASPVG KRLLLLFADT AASASASAPA AAAASGDPGP ALRTRAWRAG TVRAMSGAVP QDLAIFVEFD GCNWKQHSWV KVHAEEVIVL LLEGSLVWAP REDPVLLQGI RVSIAQWPAL TFTPLVDKLG LGSVVPVEYL LDRELRFLSD ANGLHLFQMG TDSQNQILLE HAALRETVNA LISDQKLQEI FSRGPYSVQG HRVKIYQPEG EEGWLYGVVS HQDSITRLME VSVTESGEIK SVDPRLIHVM LMDNSAPQSE GGTLKAVKSS KGKKKRESIE GKDGRRRKSA SDSGCDPASK KLKGDRGEVD SNGSDGGEAS RGPWKGGNAS GEPGLDQRAK QPPSTFVPQI NRNIRFATYT KENGRTLVVQ DEPVGGDTPA SFTPYSTATG QTPLAPEVGG AENKEAGKTL EQVGQGIVAS AAVVTTASST PNTVRISDTG LAAGTVPEKQ KGSRSQASGE NSRNSILASS GFGAPLPSSS QPLTFGSGRS QSNGVLATEN KPLGFSFGCS SAQEAQKDTD LSKNLFFQCM SQTLPTSNYF TTVSESLADD SSSRDSFKQS LESLSSGLCK GRSVLGTDTK PGSKAGSSVD RKVPAESMPT LTPAFPRSLL NARTPENHEN LFLQPPKLSR EEPSNPFLAF VEKVEHSPFS SFASQASGSS SSATTVTSKV APSWPESHSS ADSASLAKKK PLFITTDSSK LVSGVLGSAL TSGGPSLSAM GNGRSSSPTS SLTQPIEMPT LSSSPTEERP TVGPGQQDNP LLKTFSNVFG RHSGGFLSSP ADFSQENKAP FEAVKRFSLD ERSLACRQDS DSSTNSDLSD LSDSEEQLQA KTGLKGIPEH LMGKLGPNGE RSAELLLGKS KGKQAPKGRP RTAPLKVGQS VLKDVSKVKK LKQSGEPFLQ DGSCINVAPH LHKCRECRLE RYRKFKEQEQ DDSTVACRFF HFRRLIFTRK GVLRVEGFLS PQQSDPDAMN LWIPSSSLAE GIDLETSKYI LANVGDQFCQ LVMSEKEAMM MVEPHQKVAW KRAVRGVREM CDVCETTLFN IHWVCRKCGF GVCLDCYRLR KSRPRSETEE MGDEEVFSWL KCAKGQSHEP ENLMPTQIIP GTALYNIGDM VHAARGKWGI KANCPCISRQ NKSVLRPAVT NGMSQLPSIN PSASSGNETT FSGGGGPAPV TTPEPDHVPK ADSTDIRSEE PLKTDSSASN SNSELKAIRP PCPDTAPPSS ALHWLADLAT QKAKEETKEA GSLRSVLNKE SHSPFGLDSF NSTAKVSPLT PKLFNSLLLG PTASNNKTEG SSLRDLLHSG PGKLPQTPLD TGIPFPPVFS TSSAGVKSKA SLPNFLDHII ASVVENKKTS DASKRACNLT DTQKEVKEMV MGLNVLDPHT SHSWLCDGRL LCLHDPSNKN NWKIFRECWK QGQPVLVSGV HKKLKSELWK PEAFSQEFGD QDVDLVNCRN CAIISDVKVR DFWDGFEIIC KRLRSEDGQP MVLKLKDWPP GEDFRDMMPT RFEDLMENLP LPEYTKRDGR LNLASRLPSY FVRPDLGPKM YNAYGLITAE DRRVGTTNLH LDVSDAVNVM VYVGIPIGEG AHDEEVLKTI DEGDADEVTK QRIHDGKEKP GALWHIYAAK DAEKIRELLR KVGEEQGQEN PPDHDPIHDQ SWYLDQTLRK RLYEEYGVQG WAIVQFLGDA VFIPAGAPHQ VHNLYSCIKV AEDFVSPEHV KHCFRLTQEF RHLSNTHTNH EDKLQVKNII YHAVKDAVGT LKAHESKLAR S
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.