Details for: SOX9
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: ileal goblet cell (CL1000326)
Fold Change: 56.9281
Cell Significance Index: -38.2000 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 4.7105
Cell Significance Index: 325.7600 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 2.7551
Cell Significance Index: 124.8800 - Cell Name: Sertoli cell (CL0000216)
Fold Change: 2.3755
Cell Significance Index: 33.3200 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 2.2357
Cell Significance Index: 134.2200 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 2.1888
Cell Significance Index: 47.4200 - Cell Name: thyroid follicular cell (CL0002258)
Fold Change: 2.1643
Cell Significance Index: 23.0000 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 1.9048
Cell Significance Index: 54.8800 - Cell Name: odontoblast (CL0000060)
Fold Change: 1.6296
Cell Significance Index: 208.9000 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 1.5670
Cell Significance Index: 73.0600 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 1.3897
Cell Significance Index: 614.4000 - Cell Name: lactocyte (CL0002325)
Fold Change: 1.3644
Cell Significance Index: 176.2700 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 1.2357
Cell Significance Index: 58.0800 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 1.1900
Cell Significance Index: 32.3900 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.7361
Cell Significance Index: 52.0600 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.7295
Cell Significance Index: 40.9400 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.7042
Cell Significance Index: 114.5300 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.6245
Cell Significance Index: 67.9300 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.6225
Cell Significance Index: 15.5600 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.5845
Cell Significance Index: 43.5600 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.4286
Cell Significance Index: 234.0500 - Cell Name: paneth cell of colon (CL0009009)
Fold Change: 0.4144
Cell Significance Index: 6.2100 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.3661
Cell Significance Index: 12.8700 - Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
Fold Change: 0.3599
Cell Significance Index: 2.2200 - Cell Name: hippocampal astrocyte (CL0002604)
Fold Change: 0.3139
Cell Significance Index: 4.3900 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.3108
Cell Significance Index: 61.6800 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.3062
Cell Significance Index: 30.2900 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.3038
Cell Significance Index: 6.4700 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.3031
Cell Significance Index: 37.2700 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.2680
Cell Significance Index: 51.0000 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.2373
Cell Significance Index: 42.7900 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.1602
Cell Significance Index: 8.3200 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.1461
Cell Significance Index: 24.9500 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.1416
Cell Significance Index: 50.7900 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0182
Cell Significance Index: -34.3500 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0212
Cell Significance Index: -15.7200 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: -0.0227
Cell Significance Index: -4.5600 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0327
Cell Significance Index: -20.3900 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0391
Cell Significance Index: -72.1000 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0429
Cell Significance Index: -31.4700 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0468
Cell Significance Index: -71.9800 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0494
Cell Significance Index: -37.4000 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.0520
Cell Significance Index: -0.7100 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0527
Cell Significance Index: -33.5000 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0531
Cell Significance Index: -72.2100 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0556
Cell Significance Index: -31.3800 - Cell Name: glioblast (CL0000030)
Fold Change: -0.0908
Cell Significance Index: -0.5700 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.0959
Cell Significance Index: -3.0700 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0990
Cell Significance Index: -44.9500 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1237
Cell Significance Index: -35.5800 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1269
Cell Significance Index: -14.5400 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.1276
Cell Significance Index: -14.5600 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1396
Cell Significance Index: -29.4000 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.1724
Cell Significance Index: -20.0900 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1976
Cell Significance Index: -20.1800 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.2263
Cell Significance Index: -13.9100 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.2613
Cell Significance Index: -13.7200 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.2628
Cell Significance Index: -7.7400 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.2653
Cell Significance Index: -38.5700 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.2691
Cell Significance Index: -7.5200 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: -0.3037
Cell Significance Index: -41.7000 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.3103
Cell Significance Index: -36.5900 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.3762
Cell Significance Index: -9.6700 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.3831
Cell Significance Index: -29.4000 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3852
Cell Significance Index: -40.1100 - Cell Name: tuft cell of small intestine (CL0009080)
Fold Change: -0.4153
Cell Significance Index: -4.1900 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4463
Cell Significance Index: -35.3500 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.4764
Cell Significance Index: -32.0300 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: -0.5153
Cell Significance Index: -8.9100 - Cell Name: intrahepatic cholangiocyte (CL0002538)
Fold Change: -0.5655
Cell Significance Index: -2.1300 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.5819
Cell Significance Index: -12.0700 - Cell Name: epithelial cell of pancreas (CL0000083)
Fold Change: -0.6021
Cell Significance Index: -9.9200 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.6153
Cell Significance Index: -37.7300 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.6604
Cell Significance Index: -41.6300 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.6699
Cell Significance Index: -27.4500 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.6863
Cell Significance Index: -7.1100 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -0.7638
Cell Significance Index: -28.0400 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.7737
Cell Significance Index: -11.6600 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.7884
Cell Significance Index: -22.6000 - Cell Name: Mueller cell (CL0000636)
Fold Change: -0.8540
Cell Significance Index: -6.5700 - Cell Name: radial glial cell (CL0000681)
Fold Change: -0.8653
Cell Significance Index: -5.1400 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.8733
Cell Significance Index: -38.6300 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.8990
Cell Significance Index: -31.2400 - Cell Name: granulosa cell (CL0000501)
Fold Change: -1.0021
Cell Significance Index: -26.3500 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -1.0584
Cell Significance Index: -40.0800 - Cell Name: early T lineage precursor (CL0002425)
Fold Change: -1.0717
Cell Significance Index: -15.5600 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -1.1061
Cell Significance Index: -38.7500 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -1.1136
Cell Significance Index: -31.7800 - Cell Name: keratinocyte (CL0000312)
Fold Change: -1.1479
Cell Significance Index: -28.6700 - Cell Name: astrocyte (CL0000127)
Fold Change: -1.1664
Cell Significance Index: -13.3500 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -1.1888
Cell Significance Index: -60.0800 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -1.1943
Cell Significance Index: -39.1000 - Cell Name: fallopian tube secretory epithelial cell (CL4030006)
Fold Change: -1.1953
Cell Significance Index: -18.4900 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -1.2500
Cell Significance Index: -39.8100 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -1.2794
Cell Significance Index: -26.7800 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -1.3058
Cell Significance Index: -34.9300 - Cell Name: stem cell (CL0000034)
Fold Change: -1.3305
Cell Significance Index: -9.6700 - Cell Name: pro-T cell (CL0000827)
Fold Change: -1.3614
Cell Significance Index: -34.7800 - Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
Fold Change: -1.3747
Cell Significance Index: -34.2800 - Cell Name: peg cell (CL4033014)
Fold Change: -1.4167
Cell Significance Index: -32.7300
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3595952783
Symbol: SOX9_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7990924
Title: Campomelic dysplasia and autosomal sex reversal caused by mutations in an SRY-related gene.
PubMed ID: 7990924
DOI: 10.1038/372525a0
PubMed ID: 8001137
Title: Autosomal sex reversal and campomelic dysplasia are caused by mutations in and around the SRY-related gene SOX9.
PubMed ID: 8001137
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 8640233
Title: Sex reversal by loss of the C-terminal transactivation domain of human SOX9.
PubMed ID: 8640233
DOI: 10.1038/ng0696-230
PubMed ID: 12732631
Title: Transcriptional co-activators CREB-binding protein and p300 regulate chondrocyte-specific gene expression via association with Sox9.
PubMed ID: 12732631
PubMed ID: 21208124
Title: A SOX9 duplication and familial 46,XX developmental testicular disorder.
PubMed ID: 21208124
DOI: 10.1056/nejmc1010311
PubMed ID: 25604083
Title: Copy number variation of two separate regulatory regions upstream of SOX9 causes isolated 46,XY or 46,XX disorder of sex development.
PubMed ID: 25604083
PubMed ID: 28263186
Title: Loss of DDRGK1 modulates SOX9 ubiquitination in spondyloepimetaphyseal dysplasia.
PubMed ID: 28263186
DOI: 10.1172/jci90193
PubMed ID: 31382142
Title: SOX9 in cartilage development and disease.
PubMed ID: 31382142
PubMed ID: 31194875
Title: The SOXE transcription factors-SOX8, SOX9 and SOX10-share a bi-partite transactivation mechanism.
PubMed ID: 31194875
DOI: 10.1093/nar/gkz523
PubMed ID: 34342803
Title: The 9aaTAD Activation Domains in the Yamanaka Transcription Factors Oct4, Sox2, Myc, and Klf4.
PubMed ID: 34342803
PubMed ID: 9143916
Title: Mutations in SRY and SOX9: testis-determining genes.
PubMed ID: 9143916
DOI: 10.1002/(sici)1098-1004(1997)9:5<388::aid-humu2>3.0.co;2-0
PubMed ID: 7485151
Title: Mutations in SOX9, the gene responsible for Campomelic dysplasia and autosomal sex reversal.
PubMed ID: 7485151
PubMed ID: 9002675
Title: Mutational analysis of the SOX9 gene in campomelic dysplasia and autosomal sex reversal: lack of genotype/phenotype correlations.
PubMed ID: 9002675
DOI: 10.1093/hmg/6.1.91
PubMed ID: 9452059
Title: Novel missense mutation in the HMG box of SOX9 gene in a Japanese XY male resulted in campomelic dysplasia and severe defect in masculinization.
PubMed ID: 9452059
PubMed ID: 10446171
Title: Functional and structural studies of wild type SOX9 and mutations causing campomelic dysplasia.
PubMed ID: 10446171
PubMed ID: 10951468
Title: Acampomelic campomelic dysplasia with SOX9 mutation.
PubMed ID: 10951468
DOI: 10.1002/1096-8628(20000828)93:5<421::aid-ajmg14>3.3.co;2-x
PubMed ID: 11754051
PubMed ID: 11323423
Title: Compound effects of point mutations causing campomelic dysplasia/autosomal sex reversal upon SOX9 structure, nuclear transport, DNA binding, and transcriptional activation.
PubMed ID: 11323423
PubMed ID: 12783851
Title: Loss of DNA-dependent dimerization of the transcription factor SOX9 as a cause for campomelic dysplasia.
PubMed ID: 12783851
DOI: 10.1093/hmg/ddg158
PubMed ID: 19033726
Title: Campomelic dysplasia: echographic suspicion in the first trimester of pregnancy and final diagnosis of two cases.
PubMed ID: 19033726
DOI: 10.1159/000176299
PubMed ID: 19921652
Title: Mutation analysis of SOX9 and single copy number variant analysis of the upstream region in eight patients with campomelic dysplasia and acampomelic campomelic dysplasia.
PubMed ID: 19921652
DOI: 10.1002/ajmg.a.33107
PubMed ID: 20513132
Title: Heterozygous SOX9 mutations allowing for residual DNA-binding and transcriptional activation lead to the acampomelic variant of campomelic dysplasia.
PubMed ID: 20513132
DOI: 10.1002/humu.21238
PubMed ID: 24038782
Title: A novel SOX9 H169Q mutation in a family with overlapping phenotype of mild campomelic dysplasia and small patella syndrome.
PubMed ID: 24038782
DOI: 10.1002/ajmg.a.36134
Sequence Information:
- Length: 509
- Mass: 56137
- Checksum: 9289CFBB8D6631A2
- Sequence:
MNLLDPFMKM TDEQEKGLSG APSPTMSEDS AGSPCPSGSG SDTENTRPQE NTFPKGEPDL KKESEEDKFP VCIREAVSQV LKGYDWTLVP MPVRVNGSSK NKPHVKRPMN AFMVWAQAAR RKLADQYPHL HNAELSKTLG KLWRLLNESE KRPFVEEAER LRVQHKKDHP DYKYQPRRRK SVKNGQAEAE EATEQTHISP NAIFKALQAD SPHSSSGMSE VHSPGEHSGQ SQGPPTPPTT PKTDVQPGKA DLKREGRPLP EGGRQPPIDF RDVDIGELSS DVISNIETFD VNEFDQYLPP NGHPGVPATH GQVTYTGSYG ISSTAATPAS AGHVWMSKQQ APPPPPQQPP QAPPAPQAPP QPQAAPPQQP AAPPQQPQAH TLTTLSSEPG QSQRTHIKTE QLSPSHYSEQ QQHSPQQIAY SPFNLPHYSP SYPPITRSQY DYTDHQNSSS YYSHAAGQGT GLYSTFTYMN PAQRPMYTPI ADTSGVPSIP QTHSPQHWEQ PVYTQLTRP
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.