Details for: KDM5D
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 131.6659
Cell Significance Index: -20.4800 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 80.2308
Cell Significance Index: -20.3500 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 42.8490
Cell Significance Index: -20.2300 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 41.9685
Cell Significance Index: -17.0500 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 30.1480
Cell Significance Index: -20.2300 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 17.8896
Cell Significance Index: -17.0800 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 16.9674
Cell Significance Index: -20.9200 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 7.6394
Cell Significance Index: -20.4700 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 5.4637
Cell Significance Index: -21.5600 - Cell Name: fast muscle cell (CL0000190)
Fold Change: 3.7466
Cell Significance Index: 49.0700 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 2.7461
Cell Significance Index: -6.0100 - Cell Name: slow muscle cell (CL0000189)
Fold Change: 2.1539
Cell Significance Index: 32.2200 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 1.5539
Cell Significance Index: 153.7200 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 1.3501
Cell Significance Index: 256.9400 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 1.2882
Cell Significance Index: 81.1900 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 1.1801
Cell Significance Index: 34.0000 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: 1.0505
Cell Significance Index: 15.8300 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.9447
Cell Significance Index: 102.7500 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.8953
Cell Significance Index: 53.7500 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.8558
Cell Significance Index: 38.7900 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.8543
Cell Significance Index: 138.9400 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 0.7150
Cell Significance Index: 83.3300 - Cell Name: epithelial cell of esophagus (CL0002252)
Fold Change: 0.7020
Cell Significance Index: 4.6600 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.6937
Cell Significance Index: 139.1500 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.6030
Cell Significance Index: 46.2700 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.5999
Cell Significance Index: 16.0800 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.4285
Cell Significance Index: 153.7100 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: 0.4030
Cell Significance Index: 10.3600 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.4012
Cell Significance Index: 72.3300 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.3676
Cell Significance Index: 25.4200 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.3668
Cell Significance Index: 72.8000 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.3327
Cell Significance Index: 11.6900 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.3100
Cell Significance Index: 279.9500 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.2906
Cell Significance Index: 3.9700 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.2871
Cell Significance Index: 6.2200 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: 0.2614
Cell Significance Index: 17.5800 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: 0.2337
Cell Significance Index: 8.8500 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: 0.2286
Cell Significance Index: 2.8400 - Cell Name: retinal bipolar neuron (CL0000748)
Fold Change: 0.2071
Cell Significance Index: 2.5100 - Cell Name: keratocyte (CL0002363)
Fold Change: 0.2017
Cell Significance Index: 3.2000 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: 0.1605
Cell Significance Index: 7.1000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.1555
Cell Significance Index: 19.1200 - Cell Name: cortical interneuron (CL0008031)
Fold Change: 0.1461
Cell Significance Index: 3.5100 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: 0.1459
Cell Significance Index: 2.5000 - Cell Name: fibroblast of cardiac tissue (CL0002548)
Fold Change: 0.1358
Cell Significance Index: 1.9500 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.1348
Cell Significance Index: 61.1900 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.1276
Cell Significance Index: 15.0500 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.1160
Cell Significance Index: 14.8700 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0837
Cell Significance Index: 157.6900 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.0587
Cell Significance Index: 1.2500 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 0.0572
Cell Significance Index: 105.4600 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0560
Cell Significance Index: 35.5500 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: 0.0504
Cell Significance Index: 77.6600 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.0308
Cell Significance Index: 1.7300 - Cell Name: type I muscle cell (CL0002211)
Fold Change: 0.0182
Cell Significance Index: 0.4500 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0113
Cell Significance Index: 15.3700 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: 0.0086
Cell Significance Index: 1.2500 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: 0.0072
Cell Significance Index: 0.4400 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: 0.0016
Cell Significance Index: 0.0200 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0121
Cell Significance Index: -8.9300 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0146
Cell Significance Index: -0.6800 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0208
Cell Significance Index: -15.2500 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0210
Cell Significance Index: -6.0300 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: -0.0243
Cell Significance Index: -0.3500 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0245
Cell Significance Index: -13.8100 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0253
Cell Significance Index: -19.1800 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0334
Cell Significance Index: -5.7000 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.0647
Cell Significance Index: -1.7300 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.0657
Cell Significance Index: -3.4200 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.0776
Cell Significance Index: -1.6100 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.0792
Cell Significance Index: -2.2600 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.0795
Cell Significance Index: -4.1800 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.0905
Cell Significance Index: -4.7000 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0908
Cell Significance Index: -9.2800 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0926
Cell Significance Index: -19.5000 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.0960
Cell Significance Index: -2.4000 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.1080
Cell Significance Index: -2.9400 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1256
Cell Significance Index: -14.3900 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.1311
Cell Significance Index: -2.8700 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.1328
Cell Significance Index: -13.8300 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.1711
Cell Significance Index: -11.0400 - Cell Name: cone retinal bipolar cell (CL0000752)
Fold Change: -0.1732
Cell Significance Index: -1.3400 - Cell Name: retinal rod cell (CL0000604)
Fold Change: -0.1988
Cell Significance Index: -2.3700 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.2101
Cell Significance Index: -4.1000 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.2375
Cell Significance Index: -18.8100 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.2438
Cell Significance Index: -14.9500 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.2752
Cell Significance Index: -7.6900 - Cell Name: skeletal muscle fibroblast (CL0011027)
Fold Change: -0.2967
Cell Significance Index: -2.0100 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.3077
Cell Significance Index: -9.8000 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.3220
Cell Significance Index: -6.8400 - Cell Name: sst GABAergic cortical interneuron (CL4023017)
Fold Change: -0.3358
Cell Significance Index: -6.6400 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.3369
Cell Significance Index: -10.7900 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.3564
Cell Significance Index: -11.6700 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.3596
Cell Significance Index: -12.5000 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.3800
Cell Significance Index: -6.3600 - Cell Name: keratinocyte (CL0000312)
Fold Change: -0.3808
Cell Significance Index: -9.5100 - Cell Name: cardiac muscle cell (CL0000746)
Fold Change: -0.3827
Cell Significance Index: -5.6500 - Cell Name: VIP GABAergic cortical interneuron (CL4023016)
Fold Change: -0.3885
Cell Significance Index: -7.8000 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.3979
Cell Significance Index: -13.9400 - Cell Name: corneal endothelial cell (CL0000132)
Fold Change: -0.4240
Cell Significance Index: -6.4500
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 1298443168
Symbol: KDM5D_HUMAN
Name: Lysine-specific demethylase 5D
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8841177
Title: Gene sequence and evolutionary conservation of human SMCY.
PubMed ID: 8841177
DOI: 10.1038/ng1096-128
PubMed ID: 9039502
Title: Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain.
PubMed ID: 9039502
PubMed ID: 10861003
Title: Population genetic implications from sequence variation in four Y chromosome genes.
PubMed ID: 10861003
PubMed ID: 12815422
Title: The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.
PubMed ID: 12815422
DOI: 10.1038/nature01722
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 9060413
Title: Analysis of mutation rates in the SMCY/SMCX genes shows that mammalian evolution is male driven.
PubMed ID: 9060413
PubMed ID: 17320162
Title: Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a polycomb-like protein.
PubMed ID: 17320162
PubMed ID: 17320160
Title: The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases.
PubMed ID: 17320160
PubMed ID: 17351630
Title: The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase.
PubMed ID: 17351630
DOI: 10.1038/nsmb1217
PubMed ID: 18459961
Title: Spermatogenesis-specific association of SMCY and MSH5.
PubMed ID: 18459961
PubMed ID: 26747897
Title: JARID1D is a suppressor and prognostic marker of prostate cancer invasion and metastasis.
PubMed ID: 26747897
PubMed ID: 27427228
Title: Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
PubMed ID: 27427228
PubMed ID: 27477906
Title: ZMYND8 reads the dual histone mark H3K4me1-H3K14ac to antagonize the expression of metastasis-linked genes.
PubMed ID: 27477906
PubMed ID: 27185910
Title: Resistance to docetaxel in prostate cancer is associated with androgen receptor activation and loss of KDM5D expression.
PubMed ID: 27185910
Sequence Information:
- Length: 1539
- Mass: 174073
- Checksum: E58DAE374E3BD7AA
- Sequence:
MEPGCDEFLP PPECPVFEPS WAEFQDPLGY IAKIRPIAEK SGICKIRPPA DWQPPFAVEV DNFRFTPRVQ RLNELEAQTR VKLNYLDQIA KFWEIQGSSL KIPNVERKIL DLYSLSKIVI EEGGYEAICK DRRWARVAQR LHYPPGKNIG SLLRSHYERI IYPYEMFQSG ANHVQCNTHP FDNEVKDKEY KPHSIPLRQS VQPSKFSSYS RRAKRLQPDP EPTEEDIEKH PELKKLQIYG PGPKMMGLGL MAKDKDKTVH KKVTCPPTVT VKDEQSGGGN VSSTLLKQHL SLEPCTKTTM QLRKNHSSAQ FIDSYICQVC SRGDEDDKLL FCDGCDDNYH IFCLLPPLPE IPRGIWRCPK CILAECKQPP EAFGFEQATQ EYSLQSFGEM ADSFKSDYFN MPVHMVPTEL VEKEFWRLVS SIEEDVTVEY GADIHSKEFG SGFPVSNSKQ NLSPEEKEYA TSGWNLNVMP VLDQSVLCHI NADISGMKVP WLYVGMVFSA FCWHIEDHWS YSINYLHWGE PKTWYGVPSL AAEHLEEVMK MLTPELFDSQ PDLLHQLVTL MNPNTLMSHG VPVVRTNQCA GEFVITFPRA YHSGFNQGYN FAEAVNFCTA DWLPAGRQCI EHYRRLRRYC VFSHEELICK MAAFPETLDL NLAVAVHKEM FIMVQEERRL RKALLEKGVT EAEREAFELL PDDERQCIKC KTTCFLSALA CYDCPDGLVC LSHINDLCKC SSSRQYLRYR YTLDELPTML HKLKIRAESF DTWANKVRVA LEVEDGRKRS FEELRALESE ARERRFPNSE LLQRLKNCLS EVEACIAQVL GLVSGQVARM DTPQLTLTEL RVLLEQMGSL PCAMHQIGDV KDVLEQVEAY QAEAREALAT LPSSPGLLRS LLERGQQLGV EVPEAHQLQQ QVEQAQWLDE VKQALAPSAH RGSLVIMQGL LVMGAKIASS PSVDKARAEL QELLTIAERW EEKAHFCLEA RQKHPPATLE AIIRETENIP VHLPNIQALK EALTKAQAWI ADVDEIQNGD HYPCLDDLEG LVAVGRDLPV GLEELRQLEL QVLTAHSWRE KASKTFLKKN SCYTLLEVLC PCADAGSDST KRSRWMEKAL GLYQCDTELL GLSAQDLRDP GSVIVAFKEG EQKEKEGILQ LRRTNSAKPS PLAPSLMASS PTSICVCGQV PAGVGVLQCD LCQDWFHGQC VSVPHLLTSP KPSLTSSPLL AWWEWDTKFL CPLCMRSRRP RLETILALLV ALQRLPVRLP EGEALQCLTE RAIGWQDRAR KALASEDVTA LLRQLAELRQ QLQAKPRPEE ASVYTSATAC DPIREGSGNN ISKVQGLLEN GDSVTSPENM APGKGSDLEL LSSLLPQLTG PVLELPEAIR APLEELMMEG DLLEVTLDEN HSIWQLLQAG QPPDLDRIRT LLELEKFEHQ GSRTRSRALE RRRRRQKVDQ GRNVENLVQQ ELQSKRARSS GIMSQVGREE EHYQEKADRE NMFLTPSTDH SPFLKGNQNS LQHKDSGSSA ACPSLMPLLQ LSYSDEQQL
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.