Details for: LINC03135

Gene ID: 101929309

Symbol: LINC03135

Ensembl ID: ENSG00000228559

Description: long intergenic non-protein coding RNA 3135

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: helper T cell (CL0000912)
    Fold Change: 0.3491
    Cell Significance Index: 4.9600
  • Cell Name: thyroid follicular cell (CL0002258)
    Fold Change: 0.1393
    Cell Significance Index: 1.4800
  • Cell Name: glandular cell of esophagus (CL0002657)
    Fold Change: 0.1186
    Cell Significance Index: 1.2700
  • Cell Name: CD4-positive, alpha-beta memory T cell (CL0000897)
    Fold Change: 0.1092
    Cell Significance Index: 1.0500
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 0.0635
    Cell Significance Index: 4.0000
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: 0.0170
    Cell Significance Index: 12.8400
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 0.0154
    Cell Significance Index: 0.8000
  • Cell Name: neuron associated cell (CL0000095)
    Fold Change: -0.0012
    Cell Significance Index: -0.0500
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0016
    Cell Significance Index: -3.0000
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.0024
    Cell Significance Index: -0.1200
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0036
    Cell Significance Index: -2.2800
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: -0.0040
    Cell Significance Index: -2.1900
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: -0.0041
    Cell Significance Index: -0.1100
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0041
    Cell Significance Index: -6.3400
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0047
    Cell Significance Index: -6.3400
  • Cell Name: squamous epithelial cell (CL0000076)
    Fold Change: -0.0049
    Cell Significance Index: -0.0600
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: -0.0052
    Cell Significance Index: -0.9400
  • Cell Name: pulmonary capillary endothelial cell (CL4028001)
    Fold Change: -0.0063
    Cell Significance Index: -0.0900
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0092
    Cell Significance Index: -4.1600
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0092
    Cell Significance Index: -1.8400
  • Cell Name: cytotoxic T cell (CL0000910)
    Fold Change: -0.0103
    Cell Significance Index: -0.1500
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0139
    Cell Significance Index: -2.0200
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: -0.0155
    Cell Significance Index: -1.9100
  • Cell Name: endothelial cell of venule (CL1000414)
    Fold Change: -0.0159
    Cell Significance Index: -0.1800
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: -0.0167
    Cell Significance Index: -0.7800
  • Cell Name: thymocyte (CL0000893)
    Fold Change: -0.0182
    Cell Significance Index: -0.2300
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0208
    Cell Significance Index: -2.8600
  • Cell Name: keratinocyte (CL0000312)
    Fold Change: -0.0324
    Cell Significance Index: -0.8100
  • Cell Name: caudal ganglionic eminence derived cortical interneuron (CL4023064)
    Fold Change: -0.0336
    Cell Significance Index: -0.6700
  • Cell Name: fibroblast of dermis (CL0002551)
    Fold Change: -0.0368
    Cell Significance Index: -0.7700
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.0411
    Cell Significance Index: -1.3500
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.0419
    Cell Significance Index: -1.3400
  • Cell Name: CD8-positive, alpha-beta memory T cell, CD45RO-positive (CL0001203)
    Fold Change: -0.0424
    Cell Significance Index: -0.4400
  • Cell Name: duct epithelial cell (CL0000068)
    Fold Change: -0.0427
    Cell Significance Index: -0.5900
  • Cell Name: decidual cell (CL2000002)
    Fold Change: -0.0430
    Cell Significance Index: -0.6900
  • Cell Name: L2/3 intratelencephalic projecting glutamatergic neuron (CL4030059)
    Fold Change: -0.0431
    Cell Significance Index: -0.5800
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.0442
    Cell Significance Index: -1.5500
  • Cell Name: slow muscle cell (CL0000189)
    Fold Change: -0.0448
    Cell Significance Index: -0.6700
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.0462
    Cell Significance Index: -5.9700
  • Cell Name: GABAergic neuron (CL0000617)
    Fold Change: -0.0491
    Cell Significance Index: -0.6200
  • Cell Name: regular atrial cardiac myocyte (CL0002129)
    Fold Change: -0.0512
    Cell Significance Index: -0.6900
  • Cell Name: adipocyte (CL0000136)
    Fold Change: -0.0548
    Cell Significance Index: -0.7300
  • Cell Name: fast muscle cell (CL0000190)
    Fold Change: -0.0550
    Cell Significance Index: -0.7200
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.0565
    Cell Significance Index: -3.1700
  • Cell Name: tendon cell (CL0000388)
    Fold Change: -0.0565
    Cell Significance Index: -0.7700
  • Cell Name: CD8-positive, alpha-beta memory T cell (CL0000909)
    Fold Change: -0.0631
    Cell Significance Index: -0.6400
  • Cell Name: myoepithelial cell (CL0000185)
    Fold Change: -0.0635
    Cell Significance Index: -0.7200
  • Cell Name: transit amplifying cell of colon (CL0009011)
    Fold Change: -0.0678
    Cell Significance Index: -2.1700
  • Cell Name: neural crest cell (CL0011012)
    Fold Change: -0.0686
    Cell Significance Index: -0.7500
  • Cell Name: skeletal muscle satellite cell (CL0000594)
    Fold Change: -0.0706
    Cell Significance Index: -0.7500
  • Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
    Fold Change: -0.0708
    Cell Significance Index: -1.7700
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: -0.0778
    Cell Significance Index: -5.8000
  • Cell Name: blood vessel smooth muscle cell (CL0019018)
    Fold Change: -0.0778
    Cell Significance Index: -0.7400
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.0801
    Cell Significance Index: -2.3600
  • Cell Name: glutamatergic neuron (CL0000679)
    Fold Change: -0.0808
    Cell Significance Index: -0.8800
  • Cell Name: lymphocyte (CL0000542)
    Fold Change: -0.0809
    Cell Significance Index: -1.1000
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.0819
    Cell Significance Index: -3.8500
  • Cell Name: microcirculation associated smooth muscle cell (CL0008035)
    Fold Change: -0.0857
    Cell Significance Index: -0.7200
  • Cell Name: connective tissue cell (CL0002320)
    Fold Change: -0.0869
    Cell Significance Index: -0.8400
  • Cell Name: granulocyte (CL0000094)
    Fold Change: -0.0879
    Cell Significance Index: -1.0600
  • Cell Name: leukocyte (CL0000738)
    Fold Change: -0.0883
    Cell Significance Index: -1.5000
  • Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
    Fold Change: -0.0918
    Cell Significance Index: -2.2900
  • Cell Name: epithelial cell of esophagus (CL0002252)
    Fold Change: -0.0919
    Cell Significance Index: -0.6100
  • Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
    Fold Change: -0.0923
    Cell Significance Index: -1.9600
  • Cell Name: neuroendocrine cell (CL0000165)
    Fold Change: -0.0924
    Cell Significance Index: -1.1700
  • Cell Name: pulmonary alveolar type 2 cell (CL0002063)
    Fold Change: -0.0943
    Cell Significance Index: -0.7800
  • Cell Name: innate lymphoid cell (CL0001065)
    Fold Change: -0.0950
    Cell Significance Index: -1.2200
  • Cell Name: CD14-low, CD16-positive monocyte (CL0002396)
    Fold Change: -0.0958
    Cell Significance Index: -2.3200
  • Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
    Fold Change: -0.0963
    Cell Significance Index: -2.0800
  • Cell Name: VIP GABAergic cortical interneuron (CL4023016)
    Fold Change: -0.0969
    Cell Significance Index: -1.9500
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.0977
    Cell Significance Index: -4.3200
  • Cell Name: natural killer cell (CL0000623)
    Fold Change: -0.0984
    Cell Significance Index: -1.0900
  • Cell Name: stem cell (CL0000034)
    Fold Change: -0.0991
    Cell Significance Index: -0.7200
  • Cell Name: IgA plasma cell (CL0000987)
    Fold Change: -0.0991
    Cell Significance Index: -0.6600
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -0.1021
    Cell Significance Index: -2.6900
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.1040
    Cell Significance Index: -2.8300
  • Cell Name: primordial germ cell (CL0000670)
    Fold Change: -0.1053
    Cell Significance Index: -0.6500
  • Cell Name: sst GABAergic cortical interneuron (CL4023017)
    Fold Change: -0.1077
    Cell Significance Index: -2.1300
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: -0.1092
    Cell Significance Index: -2.7900
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.1105
    Cell Significance Index: -2.4200
  • Cell Name: luminal cell of prostate epithelium (CL0002340)
    Fold Change: -0.1111
    Cell Significance Index: -1.1500
  • Cell Name: astrocyte of the cerebral cortex (CL0002605)
    Fold Change: -0.1119
    Cell Significance Index: -1.9400
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.1138
    Cell Significance Index: -4.3100
  • Cell Name: CD14-positive monocyte (CL0001054)
    Fold Change: -0.1156
    Cell Significance Index: -2.2600
  • Cell Name: muscle fibroblast (CL1001609)
    Fold Change: -0.1161
    Cell Significance Index: -0.7100
  • Cell Name: hematopoietic cell (CL0000988)
    Fold Change: -0.1162
    Cell Significance Index: -1.7000
  • Cell Name: syncytiotrophoblast cell (CL0000525)
    Fold Change: -0.1211
    Cell Significance Index: -1.1500
  • Cell Name: epithelial cell of lower respiratory tract (CL0002632)
    Fold Change: -0.1214
    Cell Significance Index: -1.3500
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: -0.1244
    Cell Significance Index: -4.3700
  • Cell Name: sncg GABAergic cortical interneuron (CL4023015)
    Fold Change: -0.1245
    Cell Significance Index: -2.4500
  • Cell Name: chondroblast (CL0000058)
    Fold Change: -0.1256
    Cell Significance Index: -0.7400
  • Cell Name: mesenchymal cell (CL0008019)
    Fold Change: -0.1309
    Cell Significance Index: -2.1900
  • Cell Name: hepatocyte (CL0000182)
    Fold Change: -0.1392
    Cell Significance Index: -1.9300
  • Cell Name: suprabasal keratinocyte (CL4033013)
    Fold Change: -0.1412
    Cell Significance Index: -2.2700
  • Cell Name: T cell (CL0000084)
    Fold Change: -0.1423
    Cell Significance Index: -1.6800
  • Cell Name: neuroblast (sensu Nematoda and Protostomia) (CL0000338)
    Fold Change: -0.1463
    Cell Significance Index: -1.3300
  • Cell Name: basal cell of epidermis (CL0002187)
    Fold Change: -0.1481
    Cell Significance Index: -2.2500
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -0.1528
    Cell Significance Index: -5.6100
  • Cell Name: regulatory T cell (CL0000815)
    Fold Change: -0.1552
    Cell Significance Index: -1.8000
  • Cell Name: primitive red blood cell (CL0002355)
    Fold Change: -0.1608
    Cell Significance Index: -1.8200

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** 1. **Uncharacterized gene**: LOC101929309 is a gene with no established function or mechanism of action, making it an enigmatic entity in the field of molecular biology. 2. **Widespread expression**: The gene is expressed in various cell types, including those involved in vascular development, intestinal epithelial maintenance, and neuronal function. 3. **Cell-type specificity**: The expression patterns of LOC101929309 suggest a cell-type-specific function, which may be related to the maintenance of tissue homeostasis and cellular differentiation. **Pathways and Functions:** 1. **Cell signaling pathways**: LOC101929309 may be involved in signaling pathways that regulate cellular processes, such as cell proliferation, differentiation, and survival. The gene's expression in GABAergic interneurons suggests a potential role in neurotransmission and synaptic plasticity. 2. **Epithelial maintenance**: The expression of LOC101929309 in intestinal epithelial cells and goblet cells implies a role in maintaining the integrity of the epithelial barrier and regulating mucin production. 3. **Vascular development**: The gene's expression in blood vessel endothelial cells suggests a potential role in angiogenesis and vascular remodeling. 4. **Stem cell regulation**: LOC101929309 may be involved in regulating the self-renewal and differentiation of stem cells, as indicated by its expression in intestinal crypt stem cells and cerebral cortex radial glial cells. **Clinical Significance:** 1. **Cancer association**: The expression of LOC101929309 in abnormal cells suggests a potential role in cancer development and progression. Further studies are needed to determine its involvement in oncogenesis. 2. **Neurological disorders**: The gene's expression in GABAergic interneurons and cerebral cortex radial glial cells implies a potential role in neurological disorders, such as epilepsy and neurodevelopmental disorders. 3. **Intestinal diseases**: LOC101929309's expression in intestinal epithelial cells and goblet cells suggests a potential role in intestinal diseases, such as inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS). 4. **Reproductive health**: The gene's expression in oocytes implies a potential role in reproductive health and fertility. In conclusion, the LOC101929309 gene is a complex and enigmatic entity with multiple potential functions and clinical implications. Further research is necessary to elucidate its role in cellular processes and to determine its significance in human disease.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.