Details for: FOXA1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 5.7337
Cell Significance Index: 297.8500 - Cell Name: luminal hormone-sensing cell of mammary gland (CL4033058)
Fold Change: 5.1753
Cell Significance Index: 31.8500 - Cell Name: respiratory goblet cell (CL0002370)
Fold Change: 2.0601
Cell Significance Index: 21.2500 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 2.0583
Cell Significance Index: 334.7600 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 1.8166
Cell Significance Index: 223.3700 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 1.7918
Cell Significance Index: 323.0100 - Cell Name: paneth cell of colon (CL0009009)
Fold Change: 1.7198
Cell Significance Index: 25.7700 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: 1.6598
Cell Significance Index: 15.2900 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 1.4043
Cell Significance Index: 63.6500 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 1.3352
Cell Significance Index: 38.4700 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 1.0852
Cell Significance Index: 80.8800 - Cell Name: luminal cell of prostate epithelium (CL0002340)
Fold Change: 0.8262
Cell Significance Index: 8.5500 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.6402
Cell Significance Index: 29.8500 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.5660
Cell Significance Index: 39.1400 - Cell Name: CD14-low, CD16-positive monocyte (CL0002396)
Fold Change: 0.5544
Cell Significance Index: 13.4300 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 0.5390
Cell Significance Index: 155.0900 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.4832
Cell Significance Index: 16.9800 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.4451
Cell Significance Index: 9.4800 - Cell Name: epithelial cell of sweat gland (CL1000448)
Fold Change: 0.3842
Cell Significance Index: 0.2700 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.3581
Cell Significance Index: 68.1500 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.2776
Cell Significance Index: 250.6300 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: 0.2704
Cell Significance Index: 5.6100 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.2652
Cell Significance Index: 52.6300 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.2367
Cell Significance Index: 23.4100 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.1416
Cell Significance Index: 3.9600 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.0778
Cell Significance Index: 1.6900 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 0.0044
Cell Significance Index: 0.1400 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: 0.0023
Cell Significance Index: 0.1000 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.0037
Cell Significance Index: -0.1500 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -0.0037
Cell Significance Index: -0.1900 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0093
Cell Significance Index: -7.0100 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0136
Cell Significance Index: -25.6000 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0197
Cell Significance Index: -36.2600 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0237
Cell Significance Index: -36.4100 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0267
Cell Significance Index: -36.3400 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0325
Cell Significance Index: -24.0500 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0329
Cell Significance Index: -20.9000 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0434
Cell Significance Index: -24.4700 - Cell Name: cell in vitro (CL0001034)
Fold Change: -0.0449
Cell Significance Index: -24.5000 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.0487
Cell Significance Index: -5.6700 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0553
Cell Significance Index: -34.5100 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.0589
Cell Significance Index: -0.6100 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: -0.0663
Cell Significance Index: -0.7500 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0778
Cell Significance Index: -35.3200 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.0781
Cell Significance Index: -2.1300 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.0850
Cell Significance Index: -1.1600 - Cell Name: CD8-positive, alpha-beta thymocyte (CL0000811)
Fold Change: -0.1113
Cell Significance Index: -1.0300 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.1172
Cell Significance Index: -15.1400 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: -0.1302
Cell Significance Index: -57.5500 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1329
Cell Significance Index: -27.9900 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: -0.1411
Cell Significance Index: -28.3100 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.1413
Cell Significance Index: -24.1300 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.1438
Cell Significance Index: -20.9000 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1635
Cell Significance Index: -18.7300 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1960
Cell Significance Index: -20.0200 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: -0.1969
Cell Significance Index: -27.0400 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.2774
Cell Significance Index: -17.0100 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.2912
Cell Significance Index: -7.2800 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.2996
Cell Significance Index: -14.0800 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.3227
Cell Significance Index: -20.3400 - Cell Name: precursor cell (CL0011115)
Fold Change: -0.3264
Cell Significance Index: -2.4800 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.3305
Cell Significance Index: -22.2200 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.3590
Cell Significance Index: -23.1600 - Cell Name: luminal epithelial cell of mammary gland (CL0002326)
Fold Change: -0.4216
Cell Significance Index: -5.4300 - Cell Name: taste receptor cell (CL0000209)
Fold Change: -0.5166
Cell Significance Index: -6.0100 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -0.5237
Cell Significance Index: -19.2300 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.5241
Cell Significance Index: -29.4100 - Cell Name: centrilobular region hepatocyte (CL0019029)
Fold Change: -0.5735
Cell Significance Index: -9.6600 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.6089
Cell Significance Index: -21.1600 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.6149
Cell Significance Index: -18.1100 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.6256
Cell Significance Index: -27.6700 - Cell Name: epithelial cell (CL0000066)
Fold Change: -0.6290
Cell Significance Index: -6.6400 - Cell Name: periportal region hepatocyte (CL0019026)
Fold Change: -0.6738
Cell Significance Index: -9.9500 - Cell Name: epithelial cell of pancreas (CL0000083)
Fold Change: -0.6933
Cell Significance Index: -11.4300 - Cell Name: helper T cell (CL0000912)
Fold Change: -0.6971
Cell Significance Index: -9.9100 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.7299
Cell Significance Index: -27.6400 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.7357
Cell Significance Index: -21.0900 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -0.7710
Cell Significance Index: -20.6600 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.7790
Cell Significance Index: -22.2300 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.7857
Cell Significance Index: -20.9800 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.7938
Cell Significance Index: -20.2800 - Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
Fold Change: -0.8068
Cell Significance Index: -20.1200 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: -0.8085
Cell Significance Index: -57.1800 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -0.8107
Cell Significance Index: -21.6900 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.8215
Cell Significance Index: -28.7800 - Cell Name: keratinocyte (CL0000312)
Fold Change: -0.8424
Cell Significance Index: -21.0400 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.8456
Cell Significance Index: -22.2400 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.8598
Cell Significance Index: -28.1500 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.8804
Cell Significance Index: -28.0400 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.8983
Cell Significance Index: -19.6700 - Cell Name: stem cell (CL0000034)
Fold Change: -0.9191
Cell Significance Index: -6.6800 - Cell Name: large intestine goblet cell (CL1000320)
Fold Change: -0.9319
Cell Significance Index: -10.1000 - Cell Name: hematopoietic stem cell (CL0000037)
Fold Change: -0.9811
Cell Significance Index: -16.7700 - Cell Name: progenitor cell (CL0011026)
Fold Change: -1.0110
Cell Significance Index: -10.7400 - Cell Name: hepatoblast (CL0005026)
Fold Change: -1.0428
Cell Significance Index: -17.5400 - Cell Name: ciliated columnar cell of tracheobronchial tree (CL0002145)
Fold Change: -1.0441
Cell Significance Index: -9.5900 - Cell Name: epithelial cell of urethra (CL1000296)
Fold Change: -1.0761
Cell Significance Index: -6.6600 - Cell Name: megakaryocyte (CL0000556)
Fold Change: -1.0765
Cell Significance Index: -17.4400 - Cell Name: erythrocyte (CL0000232)
Fold Change: -1.0802
Cell Significance Index: -27.5200 - Cell Name: CD14-positive monocyte (CL0001054)
Fold Change: -1.1076
Cell Significance Index: -21.6600
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 452441095
Symbol: FOXA1_HUMAN
Name: Hepatocyte nuclear factor 3-alpha
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8652662
Title: Molecular cloning of the forkhead transcription factor HNF-3 alpha from a human pulmonary adenocarcinoma cell line.
PubMed ID: 8652662
PubMed ID: 10899756
Title: The human HNF-3 genes: cloning, partial sequence and mutation screening in patients with impaired glucose homeostasis.
PubMed ID: 10899756
DOI: 10.1159/000022943
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 12508121
Title: The DNA sequence and analysis of human chromosome 14.
PubMed ID: 12508121
DOI: 10.1038/nature01348
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 12234996
Title: The hepatocyte nuclear factor 3 alpha gene, HNF3alpha (FOXA1), on chromosome band 14q13 is amplified and overexpressed in esophageal and lung adenocarcinomas.
PubMed ID: 12234996
PubMed ID: 15987773
Title: Forkhead box A1 regulates prostate ductal morphogenesis and promotes epithelial cell maturation.
PubMed ID: 15987773
DOI: 10.1242/dev.01917
PubMed ID: 16087863
Title: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response.
PubMed ID: 16087863
PubMed ID: 16331276
Title: BRCA1 and FOXA1 proteins coregulate the expression of the cell cycle-dependent kinase inhibitor p27(Kip1).
PubMed ID: 16331276
PubMed ID: 17220277
Title: Physical and functional interactions between homeodomain NKX2.1 and winged helix/forkhead FOXA1 in lung epithelial cells.
PubMed ID: 17220277
DOI: 10.1128/mcb.01133-06
PubMed ID: 18358809
Title: FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.
PubMed ID: 18358809
PubMed ID: 19127412
Title: Role of Foxa1 in regulation of bcl2 expression during oxidative-stress-induced apoptosis in A549 type II pneumocytes.
PubMed ID: 19127412
PubMed ID: 19919681
Title: Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq.
PubMed ID: 19919681
PubMed ID: 19917725
Title: Histone deacetylase 7 and FoxA1 in estrogen-mediated repression of RPRM.
PubMed ID: 19917725
DOI: 10.1128/mcb.00907-09
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
Sequence Information:
- Length: 472
- Mass: 49148
- Checksum: B2489523459EEB4C
- Sequence:
MLGTVKMEGH ETSDWNSYYA DTQEAYSSVP VSNMNSGLGS MNSMNTYMTM NTMTTSGNMT PASFNMSYAN PGLGAGLSPG AVAGMPGGSA GAMNSMTAAG VTAMGTALSP SGMGAMGAQQ AASMNGLGPY AAAMNPCMSP MAYAPSNLGR SRAGGGGDAK TFKRSYPHAK PPYSYISLIT MAIQQAPSKM LTLSEIYQWI MDLFPYYRQN QQRWQNSIRH SLSFNDCFVK VARSPDKPGK GSYWTLHPDS GNMFENGCYL RRQKRFKCEK QPGAGGGGGS GSGGSGAKGG PESRKDPSGA SNPSADSPLH RGVHGKTGQL EGAPAPGPAA SPQTLDHSGA TATGGASELK TPASSTAPPI SSGPGALASV PASHPAHGLA PHESQLHLKG DPHYSFNHPF SINNLMSSSE QQHKLDFKAY EQALQYSPYG STLPASLPLG SASVTTRSPI EPSALEPAYY QGVYSRPVLN TS
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.