Details for: SLC1A7

Gene ID: 6512

Symbol: SLC1A7

Ensembl ID: ENSG00000162383

Description: solute carrier family 1 member 7

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: photoreceptor cell (CL0000210)
    Fold Change: 21.0722
    Cell Significance Index: 295.9600
  • Cell Name: cone retinal bipolar cell (CL0000752)
    Fold Change: 9.3683
    Cell Significance Index: 72.2100
  • Cell Name: mucosal type mast cell (CL0000485)
    Fold Change: 8.6891
    Cell Significance Index: -3.5300
  • Cell Name: bipolar neuron (CL0000103)
    Fold Change: 6.2451
    Cell Significance Index: 35.0200
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: 4.3010
    Cell Significance Index: 51.2700
  • Cell Name: eye photoreceptor cell (CL0000287)
    Fold Change: 3.4830
    Cell Significance Index: 219.5200
  • Cell Name: OFF-bipolar cell (CL0000750)
    Fold Change: 2.4867
    Cell Significance Index: 21.9100
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: 2.1542
    Cell Significance Index: 313.1400
  • Cell Name: hematopoietic stem cell (CL0000037)
    Fold Change: 1.9931
    Cell Significance Index: 34.0700
  • Cell Name: retinal bipolar neuron (CL0000748)
    Fold Change: 0.7342
    Cell Significance Index: 8.9000
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.6143
    Cell Significance Index: 27.8500
  • Cell Name: diffuse bipolar 1 cell (CL4033027)
    Fold Change: 0.5379
    Cell Significance Index: 6.5800
  • Cell Name: enteroendocrine cell of colon (CL0009042)
    Fold Change: 0.4729
    Cell Significance Index: 90.0000
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: 0.3047
    Cell Significance Index: 15.4000
  • Cell Name: ON-bipolar cell (CL0000749)
    Fold Change: 0.2408
    Cell Significance Index: 2.7200
  • Cell Name: retinal cone cell (CL0000573)
    Fold Change: 0.2091
    Cell Significance Index: 2.6100
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.1935
    Cell Significance Index: 174.7000
  • Cell Name: gut absorptive cell (CL0000677)
    Fold Change: 0.1839
    Cell Significance Index: 11.0400
  • Cell Name: rod bipolar cell (CL0000751)
    Fold Change: 0.1753
    Cell Significance Index: 2.0100
  • Cell Name: colon goblet cell (CL0009039)
    Fold Change: 0.1646
    Cell Significance Index: 16.2900
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: 0.1307
    Cell Significance Index: 2.5500
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.1300
    Cell Significance Index: 14.1400
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.1100
    Cell Significance Index: 3.1700
  • Cell Name: giant bipolar cell (CL4033035)
    Fold Change: 0.0940
    Cell Significance Index: 1.1000
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.0908
    Cell Significance Index: 14.7700
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 0.0800
    Cell Significance Index: 5.5300
  • Cell Name: paneth cell of epithelium of small intestine (CL1000343)
    Fold Change: 0.0540
    Cell Significance Index: 1.1700
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: 0.0264
    Cell Significance Index: 1.4800
  • Cell Name: invaginating midget bipolar cell (CL4033034)
    Fold Change: 0.0235
    Cell Significance Index: 0.2900
  • Cell Name: diffuse bipolar 4 cell (CL4033031)
    Fold Change: 0.0222
    Cell Significance Index: 0.2700
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.0169
    Cell Significance Index: 3.3600
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: 0.0080
    Cell Significance Index: 5.0700
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: 0.0048
    Cell Significance Index: 8.9800
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.0020
    Cell Significance Index: 1.4100
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.0009
    Cell Significance Index: 0.0300
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.0007
    Cell Significance Index: 0.0200
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0013
    Cell Significance Index: -2.4200
  • Cell Name: lens epithelial cell (CL0002224)
    Fold Change: -0.0014
    Cell Significance Index: -2.2000
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0016
    Cell Significance Index: -2.2000
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: -0.0023
    Cell Significance Index: -0.6500
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0032
    Cell Significance Index: -1.4700
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: -0.0035
    Cell Significance Index: -0.0500
  • Cell Name: flat midget bipolar cell (CL4033033)
    Fold Change: -0.0040
    Cell Significance Index: -0.0500
  • Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
    Fold Change: -0.0046
    Cell Significance Index: -3.3800
  • Cell Name: enteroendocrine cell of small intestine (CL0009006)
    Fold Change: -0.0048
    Cell Significance Index: -0.1200
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: -0.0048
    Cell Significance Index: -3.5400
  • Cell Name: pulmonary alveolar epithelial cell (CL0000322)
    Fold Change: -0.0050
    Cell Significance Index: -3.7800
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0063
    Cell Significance Index: -3.5800
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: -0.0090
    Cell Significance Index: -3.2200
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: -0.0137
    Cell Significance Index: -2.4700
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0158
    Cell Significance Index: -0.9700
  • Cell Name: glycinergic neuron (CL1001509)
    Fold Change: -0.0164
    Cell Significance Index: -0.8600
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: -0.0165
    Cell Significance Index: -3.3100
  • Cell Name: paneth cell of colon (CL0009009)
    Fold Change: -0.0167
    Cell Significance Index: -0.2500
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: -0.0167
    Cell Significance Index: -0.8700
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0167
    Cell Significance Index: -2.2900
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0183
    Cell Significance Index: -3.1300
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: -0.0224
    Cell Significance Index: -2.2900
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: -0.0243
    Cell Significance Index: -2.8400
  • Cell Name: basal cell of urothelium (CL1000486)
    Fold Change: -0.0255
    Cell Significance Index: -3.1400
  • Cell Name: diffuse bipolar 2 cell (CL4033028)
    Fold Change: -0.0277
    Cell Significance Index: -0.3400
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0305
    Cell Significance Index: -3.5000
  • Cell Name: lactocyte (CL0002325)
    Fold Change: -0.0322
    Cell Significance Index: -4.1600
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.0345
    Cell Significance Index: -3.5900
  • Cell Name: CD8-positive, alpha-beta cytokine secreting effector T cell (CL0000908)
    Fold Change: -0.0348
    Cell Significance Index: -0.3700
  • Cell Name: foveolar cell of stomach (CL0002179)
    Fold Change: -0.0353
    Cell Significance Index: -0.2300
  • Cell Name: retinal ganglion cell (CL0000740)
    Fold Change: -0.0366
    Cell Significance Index: -0.3000
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.0398
    Cell Significance Index: -2.6800
  • Cell Name: diffuse bipolar 3b cell (CL4033030)
    Fold Change: -0.0415
    Cell Significance Index: -0.5000
  • Cell Name: early T lineage precursor (CL0002425)
    Fold Change: -0.0496
    Cell Significance Index: -0.7200
  • Cell Name: mesenchymal stem cell (CL0000134)
    Fold Change: -0.0527
    Cell Significance Index: -0.5100
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.0557
    Cell Significance Index: -4.2800
  • Cell Name: CD14-low, CD16-positive monocyte (CL0002396)
    Fold Change: -0.0586
    Cell Significance Index: -1.4200
  • Cell Name: forebrain neuroblast (CL1000042)
    Fold Change: -0.0594
    Cell Significance Index: -3.6500
  • Cell Name: retinal pigment epithelial cell (CL0002586)
    Fold Change: -0.0604
    Cell Significance Index: -0.6500
  • Cell Name: eukaryotic cell (CL0000255)
    Fold Change: -0.0665
    Cell Significance Index: -2.8900
  • Cell Name: BEST4+ enteroycte (CL4030026)
    Fold Change: -0.0698
    Cell Significance Index: -1.0500
  • Cell Name: keratocyte (CL0002363)
    Fold Change: -0.0731
    Cell Significance Index: -1.1600
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.0805
    Cell Significance Index: -2.1900
  • Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
    Fold Change: -0.0810
    Cell Significance Index: -3.8100
  • Cell Name: decidual cell (CL2000002)
    Fold Change: -0.0817
    Cell Significance Index: -1.3100
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: -0.0847
    Cell Significance Index: -3.1100
  • Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
    Fold Change: -0.0854
    Cell Significance Index: -0.8600
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.0866
    Cell Significance Index: -3.8300
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.0891
    Cell Significance Index: -2.2900
  • Cell Name: lens fiber cell (CL0011004)
    Fold Change: -0.0892
    Cell Significance Index: -2.8200
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.0895
    Cell Significance Index: -2.5000
  • Cell Name: Mueller cell (CL0000636)
    Fold Change: -0.0981
    Cell Significance Index: -0.7600
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.1001
    Cell Significance Index: -3.7900
  • Cell Name: keratinocyte (CL0000312)
    Fold Change: -0.1013
    Cell Significance Index: -2.5300
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.1015
    Cell Significance Index: -3.5600
  • Cell Name: S cone cell (CL0003050)
    Fold Change: -0.1047
    Cell Significance Index: -1.2200
  • Cell Name: megakaryocyte-erythroid progenitor cell (CL0000050)
    Fold Change: -0.1079
    Cell Significance Index: -1.4800
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.1092
    Cell Significance Index: -3.5800
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.1103
    Cell Significance Index: -3.2500
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: -0.1123
    Cell Significance Index: -3.0100
  • Cell Name: transit amplifying cell of small intestine (CL0009012)
    Fold Change: -0.1133
    Cell Significance Index: -2.3500
  • Cell Name: cerebral cortex endothelial cell (CL1001602)
    Fold Change: -0.1145
    Cell Significance Index: -2.3300
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.1159
    Cell Significance Index: -3.6900
  • Cell Name: hepatoblast (CL0005026)
    Fold Change: -0.1165
    Cell Significance Index: -1.9600

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** 1. **High-affinity glutamate transporter:** SLC1A7 is a high-affinity glutamate transporter, responsible for the uptake of glutamate from the synaptic cleft into the presynaptic neuron. 2. **Neuronal specificity:** EAA5 is predominantly expressed in photoreceptor cells, rod bipolar cells, and conventional dendritic cells, highlighting its importance in neural function and neurotransmission. 3. **Regulation of glutamate levels:** SLC1A7 plays a critical role in maintaining glutamate homeostasis, preventing excessive glutamate release and excitotoxicity. 4. **Disease association:** Variations in the SLC1A7 gene have been linked to various neurological disorders, including epilepsy, Alzheimer's disease, and schizophrenia. **Pathways and Functions:** SLC1A7 is involved in several key pathways, including: 1. **Excitatory postsynaptic potential (EPSP):** EAA5 regulates the uptake of glutamate from the synaptic cleft, modulating the strength of EPSPs and neurotransmission. 2. **Glutamate release cycle:** SLC1A7 is essential for the uptake of glutamate after release from the presynaptic neuron, preventing excitotoxicity and maintaining glutamate homeostasis. 3. **Neurotransmitter transport:** EAA5 participates in the transport of other neurotransmitters, such as GABA and glycine, influencing neural function and neurotransmission. 4. **Monoatomic ion transport:** SLC1A7 is also involved in the transport of other monoatomic ions, such as sodium and potassium, contributing to neural excitability and function. **Clinical Significance:** Dysregulation of SLC1A7 has been implicated in various neurological disorders, including: 1. **Epilepsy:** Variations in the SLC1A7 gene have been associated with a higher risk of developing epilepsy, highlighting the importance of glutamate homeostasis in seizure regulation. 2. **Alzheimer's disease:** SLC1A7 has been linked to Alzheimer's disease, with studies suggesting that impaired glutamate uptake contributes to disease pathology. 3. **Schizophrenia:** EAA5 has been implicated in schizophrenia, with variations in the SLC1A7 gene potentially contributing to the development of the disorder. 4. **Neurodevelopmental disorders:** SLC1A7 has also been linked to neurodevelopmental disorders, such as autism spectrum disorder and attention-deficit/hyperactivity disorder (ADHD), highlighting the importance of glutamate homeostasis in brain development and function. In conclusion, SLC1A7 plays a critical role in regulating glutamate levels and neurotransmission in the central nervous system. Its dysregulation has been implicated in various neurological disorders, emphasizing the importance of maintaining glutamate homeostasis for optimal neural function and disease prevention. Further research is needed to fully elucidate the mechanisms underlying SLC1A7 dysfunction and its clinical significance.

Genular Protein ID: 1278100296

Symbol: EAA5_HUMAN

Name: Retinal glutamate transporter

UniProtKB Accession Codes:

O00341 Q5VVZ0 Q969Z8 Q9BW45

Database IDs:

AGR 1 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 BioMuta 1 CCDS 2 CTD 1 ChEBI 12 DNASU 1 DisGeNET 1 DrugBank 1 EMBL 7 Ensembl 2 ExpressionAtlas 1 GO 14 Gene3D 1 GeneCards 1 GeneTree 1 GeneWiki 1 GenomeRNAi 1 GlyCosmos 1 GlyGen 1 GuidetoPHARMACOLOGY 1 HGNC 1 HPA 1 InParanoid 1 IntAct 1 InterPro 4 KEGG 1 MANE-Select 1 MIM 1 MassIVE 1 NCBI Taxonomy 1 OMA 1 OpenTargets 1 OrthoDB 1 PANTHER 2 PRINTS 1 PRO 1 PROSITE 2 PathwayCommons 1 PaxDb 1 PeptideAtlas 1 Pfam 1 PharmGKB 1 Pharos 1 PhosphoSitePlus 1 PhylomeDB 1 Proteomes 1 RNAct 1 Reactome 2 RefSeq 3 Rhea 3 SIGNOR 1 SMR 1 STRING 1 SUPFAM 1 SignaLink 1 TCDB 1 TreeFam 1 UCSC 1 VEuPathDB 1 iPTMnet 1 jPOST 1 neXtProt 1

Citations:

PubMed ID: 9108121

Title: Excitatory amino acid transporter 5, a retinal glutamate transporter coupled to a chloride conductance.

PubMed ID: 9108121

DOI: 10.1073/pnas.94.8.4155

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 16959974

Title: The consensus coding sequences of human breast and colorectal cancers.

PubMed ID: 16959974

DOI: 10.1126/science.1133427

Sequence Information:

  • Length: 560
  • Mass: 60658
  • Checksum: 17C527B745BB01E6
  • Sequence:
    • MVPHAILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM 
LKMMILPLVV SSLMSGLASL DAKTSSRLGV LTVAYYLWTT FMAVIVGIFM VSIIHPGSAA 
QKETTEQSGK PIMSSADALL DLIRNMFPAN LVEATFKQYR TKTTPVVKSP KVAPEEAPPR 
RILIYGVQEE NGSHVQNFAL DLTPPPEVVY KSEPGTSDGM NVLGIVFFSA TMGIMLGRMG 
DSGAPLVSFC QCLNESVMKI VAVAVWYFPF GIVFLIAGKI LEMDDPRAVG KKLGFYSVTV 
VCGLVLHGLF ILPLLYFFIT KKNPIVFIRG ILQALLIALA TSSSSATLPI TFKCLLENNH 
IDRRIARFVL PVGATINMDG TALYEAVAAI FIAQVNNYEL DFGQIITISI TATAASIGAA 
GIPQAGLVTM VIVLTSVGLP TDDITLIIAV DWALDRFRTM INVLGDALAA GIMAHICRKD 
FARDTGTEKL LPCETKPVSL QEIVAAQQNG CVKSVAEASE LTLGPTCPHH VPVQVEQDEE 
LPAASLNHCT IQISELETNV

Genular Protein ID: 975401581

Symbol: G1CT06_HUMAN

Name: N/A

UniProtKB Accession Codes:

G1CT06

Database IDs:

ARBA 7 AlphaFoldDB 1 BioGRID-ORCS 1 CTD 1 DNASU 1 DisGeNET 1 EMBL 2 GO 4 Gene3D 1 InterPro 4 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 2 PeptideAtlas 1 Pfam 1 RefSeq 1 RuleBase 1 SUPFAM 1

Sequence Information:

  • Length: 619
  • Mass: 66978
  • Checksum: A197A879D5F129AB
  • Sequence:
    • MVPHAILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM 
LKMMILPLVV SSLMSGLASL DAKTSSRLGV LTVAYYLWTT FMAVIVGIFM VSIIHPGSAA 
QKETTEQSGK PIMSSADALL DLIRNMFPAN LVEATFKQYR TKTTPVVKSP KVAPEEAPPR 
RILIYGVQEE NGSHVQNFAL DLTPPPEVVY KSEPGTSDGM NVLGIVFFSA TMGIMLGRMG 
DSGAPLVSFC QCLNESVMKI VAVAVWYFPF GIVFLIAGKI LEMDDPRAVG KKLGFYSVTV 
VCGLVLHGLF ILPLLYFFIT KKNPIVFIRG ILQALLIALA TSSRKNQVRA LQCPRSLPPA 
GAALQRHKHS WRGGCLGRGE LPDRGPSHPG GGCWADTGPS NRSSATLPIT FKCLLENNHI 
DRRIARFVLP VGATINMDGT ALYEAVAAIF IAQVNNYELD FGQIITISIT ATAASIGAAG 
IPQAGLVTMV IVLTSVGLPT DDITLIIAVD WALDRFRTMI NVLGDALAAG IMAHICRKDF 
ARDTGTEKLL PCETKPVSLQ EIVAAQQNGC VKSVAEASEL TLGPTCPHHV PVQVERDEEL 
PAASLNHCTI QISELETNV

Genular Protein ID: 3469676870

Symbol: F1T0D3_HUMAN

Name: N/A

UniProtKB Accession Codes:

F1T0D3

Database IDs:

ARBA 7 Bgee 1 BioGRID-ORCS 1 CTD 1 DNASU 1 DisGeNET 1 EMBL 3 Ensembl 2 GO 3 Gene3D 1 GeneTree 1 HGNC 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 1 PeptideAtlas 1 Pfam 1 Proteomes 2 RefSeq 4 RuleBase 1 SAM 1 SUPFAM 1 VEuPathDB 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

PubMed ID: 21697133

Title: Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method.

PubMed ID: 21697133

DOI: 10.1167/iovs.11-7479

Sequence Information:

  • Length: 450
  • Mass: 48809
  • Checksum: B2C3096D9ACD0CD0
  • Sequence:
    • MVPHAILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM 
LKMMILPLVV SSLMSGLASL DAKTSSRLGV LTVAYYLWTT FMAVIVGIFM VSIIHPGSAA 
QKETTEQSGK PIMSSADALL DLIRNMFPAN LVEATFKQYR TKTTPVVKSP KVAPEEAPPR 
RILIYGVQEE NGSHVQNFAL DLTPPPEVVY KSEPGTSDGM NVLGIVFFSA TMGIMLGRMG 
DSGAPLVSFC QCLNESVMKI VAVAVWYFPF GIVFLIAGKI LEMDDPRAVG KKLGFYSVTV 
VCGLVLHGLF ILPLLYFFIT KKNPIVFIRG ILQALLIALA TSSSACWRTT TSTGASLASC 
CPWVPPSTWT ALRSTRLWPP SSSPRSTTTS WTLARSSPSV SQPLQPALGQ LASPRPASSP 
WSSCSPPWDC PPMTSPSSLP LTGLWTVSAP

Genular Protein ID: 1648237369

Symbol: A0A087WUF9_HUMAN

Name: N/A

UniProtKB Accession Codes:

A0A087WUF9

Database IDs:

ARBA 7 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID-ORCS 1 CTD 1 DNASU 1 DisGeNET 1 EMBL 1 Ensembl 2 ExpressionAtlas 1 GO 3 Gene3D 1 GeneTree 1 HGNC 1 InterPro 4 MassIVE 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 2 PeptideAtlas 2 Pfam 1 Proteomes 2 RefSeq 1 RuleBase 1 SMR 1 SUPFAM 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

Sequence Information:

  • Length: 619
  • Mass: 66950
  • Checksum: F1A4A879D5F129A9
  • Sequence:
    • MVPHAILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM 
LKMMILPLVV SSLMSGLASL DAKTSSRLGV LTVAYYLWTT FMAVIVGIFM VSIIHPGSAA 
QKETTEQSGK PIMSSADALL DLIRNMFPAN LVEATFKQYR TKTTPVVKSP KVAPEEAPPR 
RILIYGVQEE NGSHVQNFAL DLTPPPEVVY KSEPGTSDGM NVLGIVFFSA TMGIMLGRMG 
DSGAPLVSFC QCLNESVMKI VAVAVWYFPF GIVFLIAGKI LEMDDPRAVG KKLGFYSVTV 
VCGLVLHGLF ILPLLYFFIT KKNPIVFIRG ILQALLIALA TSSRKNQVRA LQCPRSLPPA 
GAALQRHKHS WRGGCLGRGE LPDRGPSHPG GGCWADTGPS NRSSATLPIT FKCLLENNHI 
DRRIARFVLP VGATINMDGT ALYEAVAAIF IAQVNNYELD FGQIITISIT ATAASIGAAG 
IPQAGLVTMV IVLTSVGLPT DDITLIIAVD WALDRFRTMI NVLGDALAAG IMAHICRKDF 
ARDTGTEKLL PCETKPVSLQ EIVAAQQNGC VKSVAEASEL TLGPTCPHHV PVQVEQDEEL 
PAASLNHCTI QISELETNV

Genular Protein ID: 3603065755

Symbol: F1T0D4_HUMAN

Name: N/A

UniProtKB Accession Codes:

F1T0D4

Database IDs:

ARBA 7 Antibodypedia 1 Bgee 1 BioGRID-ORCS 1 CTD 1 DNASU 1 DisGeNET 1 EMBL 3 Ensembl 2 GO 3 Gene3D 1 GeneTree 1 HGNC 1 HOGENOM 1 InterPro 4 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 2 PeptideAtlas 1 Pfam 1 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SUPFAM 1 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

PubMed ID: 21697133

Title: Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method.

PubMed ID: 21697133

DOI: 10.1167/iovs.11-7479

Sequence Information:

  • Length: 472
  • Mass: 51244
  • Checksum: 5D488213AA6C0F8A
  • Sequence:
    • MVPHAILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM 
LKMMILPLVV SRNMFPANLV EATFKQYRTK TTPVVKSPKV APEEAPPRRI LIYGVQEENG 
SHVQNFALDL TPPPEVVYKS EPGTSDGMNV LGIVFFSATM GIMLGRMGDS GAPLVSFCQC 
LNESVMKIVA VAVWYFPFGI VFLIAGKILE MDDPRAVGKK LGFYSVTVVC GLVLHGLFIL 
PLLYFFITKK NPIVFIRGIL QALLIALATS SSSATLPITF KCLLENNHID RRIARFVLPV 
GATINMDGTA LYEAVAAIFI AQVNNYELDF GQIITISITA TAASIGAAGI PQAGLVTMVI 
VLTSVGLPTD DITLIIAVDW ALDRFRTMIN VLGDALAAGI MAHICRKDFA RDTGTETCFP 
SPETAALRDQ ASEPPGDRGS PAEWLCEECS RGLRAHPGPH LPPPRPRSSG AG

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.