No CSI details found for gene ID: 5988
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 2165872911
Symbol: RFPL1_HUMAN
Name: Ret finger protein-like 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 10508838
Title: Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts.
PubMed ID: 10508838
DOI: 10.1101/gr.9.9.803
PubMed ID: 15461802
Title: A genome annotation-driven approach to cloning the human ORFeome.
PubMed ID: 15461802
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 20725088
Title: Primate-specific RFPL1 gene controls cell-cycle progression through cyclin B1/Cdc2 degradation.
PubMed ID: 20725088
DOI: 10.1038/cdd.2010.102
Sequence Information:
- Length: 317
- Mass: 35491
- Checksum: 75FDDED7BF51B8CA
- Sequence:
MKRLSLVTTN RLSPHGNFLP LCTFPLAVDM AALFQEASSC PVCSDYLEKP MSLECGCAVC FKCINSLQKE PHGEDLLCCC CSMVSQKNKI RPSWQLERLA SHIKELEPKL KKILQMNPRM RKFQVDMTLD ADTANNFLLI SDDLRSVRSG CITQNRQDLA ERFDVSICIL GSPRFTCGRH YWEVDVGTST EWDLGVCRES VHRKGRIHLT TERGFWTVSL RDGSRLSAST VPLTFLFVDR KLQRVGIFLD MGMQNVSFFD AEGGSHVYTF RSVSAEEPLH LFFAPPSPPN GDKSVLSICP VINPGTTDAP VHPGEAK
Details Unavailable
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{
"geneID": 5988,
"tax": {
"id": 9606,
"name": [
{
"name": "Homo sapiens Linnaeus 1758"
},
{
"name": "Homo sapiens",
"type": 0
},
{
"name": "human",
"type": 4
}
]
},
"accession": {
"gene": [
"AC000041.2"
]
},
"symbol": "RFPL1",
"created": {
"$date": {
"$numberLong": "1738333349136"
}
},
"crossReference": {
"enseGeneID": "ENSG00000128250",
"enseRnaID": [
"ENST00000354373.2"
],
"enseProtID": [
"ENSP00000346342.2"
]
},
"genePos": {
"end": 29442455,
"start": 29387909
},
"chrom": {
"pos": "22",
"type": 1,
"loc": "22q12.2"
},
"desc": "ret finger protein like 1",
"geneType": 5,
"ontology": [
{
"id": "GO:0019901",
"term": "protein kinase binding",
"cat": 0
},
{
"id": "GO:0042803",
"term": "protein homodimerization activity",
"cat": 0
},
{
"id": "GO:0046872",
"term": "metal ion binding",
"cat": 0
},
{
"id": "GO:0061630",
"term": "ubiquitin protein ligase activity",
"cat": 0
},
{
"id": "GO:0008285",
"term": "negative regulation of cell population proliferation",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0010468",
"term": "regulation of gene expression",
"cat": 1
},
{
"id": "GO:0010508",
"term": "positive regulation of autophagy",
"cat": 1
},
{
"id": "GO:0010972",
"term": "negative regulation of G2\/M transition of mitotic cell cycle",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0032436",
"term": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0032880",
"term": "regulation of protein localization",
"cat": 1
},
{
"id": "GO:0043065",
"term": "positive regulation of apoptotic process",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0043123",
"term": "positive regulation of canonical NF-kappaB signal transduction",
"cat": 1
},
{
"id": "GO:0045087",
"term": "innate immune response",
"cat": 1
},
{
"id": "GO:0045930",
"term": "negative regulation of mitotic cell cycle",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0046596",
"term": "regulation of viral entry into host cell",
"cat": 1
},
{
"id": "GO:0051782",
"term": "negative regulation of cell division",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:2001272",
"term": "positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis",
"pubMed": [
20725088
],
"cat": 1
},
{
"id": "GO:0005654",
"term": "nucleoplasm",
"cat": 2
},
{
"id": "GO:0005737",
"term": "cytoplasm",
"cat": 2
},
{
"id": "GO:0005737",
"term": "cytoplasm",
"pubMed": [
20725088
],
"cat": 2
},
{
"id": "GO:0005829",
"term": "cytosol",
"cat": 2
}
],
"protein": [
{
"symbol": "RFPL1_HUMAN",
"name": "Ret finger protein-like 1",
"accession": [
"O75677",
"Q6IC06",
"Q9UJ97"
],
"databaseIDs": {
"NCBI Taxonomy": [
"9606"
],
"EMBL": [
"AJ010228",
"AJ010229",
"CR456562",
"BC104768"
],
"CCDS": [
"CCDS13857.2"
],
"RefSeq": [
"NP_066306.2",
"XP_011528600.1",
"XP_011528601.1",
"XP_016884389.1",
"XP_016884390.1",
"XP_016884391.1"
],
"AlphaFoldDB": [
"O75677"
],
"SMR": [
"O75677"
],
"BioGRID": [
"111920"
],
"IntAct": [
"O75677"
],
"STRING": [
"9606.ENSP00000346342"
],
"iPTMnet": [
"O75677"
],
"PhosphoSitePlus": [
"O75677"
],
"BioMuta": [
"RFPL1"
],
"jPOST": [
"O75677"
],
"MassIVE": [
"O75677"
],
"PaxDb": [
"9606-ENSP00000346342"
],
"PeptideAtlas": [
"O75677"
],
"Antibodypedia": [
"24513"
],
"DNASU": [
"5988"
],
"Ensembl": [
"ENST00000354373.2"
],
"KEGG": [
"hsa:5988"
],
"MANE-Select": [
"ENST00000354373.2"
],
"UCSC": [
"uc003afn.3"
],
"AGR": [
"HGNC:9977"
],
"CTD": [
"5988"
],
"DisGeNET": [
"5988"
],
"GeneCards": [
"RFPL1"
],
"HGNC": [
"HGNC:9977"
],
"HPA": [
"ENSG00000128250"
],
"MIM": [
"605968"
],
"neXtProt": [
"NX_O75677"
],
"OpenTargets": [
"ENSG00000128250"
],
"PharmGKB": [
"PA34346"
],
"VEuPathDB": [
"HostDB:ENSG00000128250"
],
"eggNOG": [
"KOG2177"
],
"GeneTree": [
"ENSGT00940000163408"
],
"HOGENOM": [
"CLU_013137_7_1_1"
],
"InParanoid": [
"O75677"
],
"OMA": [
"CKTSISK"
],
"OrthoDB": [
"4508030at2759"
],
"PhylomeDB": [
"O75677"
],
"TreeFam": [
"TF317532"
],
"PathwayCommons": [
"O75677"
],
"SignaLink": [
"O75677"
],
"SIGNOR": [
"O75677"
],
"BioGRID-ORCS": [
"5988"
],
"ChiTaRS": [
"RFPL1"
],
"GenomeRNAi": [
"5988"
],
"Pharos": [
"O75677"
],
"PRO": [
"PR:O75677"
],
"Proteomes": [
"UP000005640"
],
"RNAct": [
"O75677"
],
"Bgee": [
"ENSG00000128250"
],
"GO": [
"GO:0005737",
"GO:0005829",
"GO:0005654",
"GO:0046872",
"GO:0042803",
"GO:0019901",
"GO:0061630",
"GO:0045087",
"GO:0051782",
"GO:0008285",
"GO:0010972",
"GO:0045930",
"GO:0043065",
"GO:0010508",
"GO:0043123",
"GO:2001272",
"GO:0032436",
"GO:0000209",
"GO:0032880",
"GO:0046596"
],
"CDD": [
"cd15821",
"cd16621"
],
"Gene3D": [
"2.60.120.920",
"3.30.40.10"
],
"InterPro": [
"IPR001870",
"IPR043136",
"IPR003879",
"IPR013320",
"IPR006574",
"IPR022723",
"IPR037960",
"IPR003877",
"IPR050143",
"IPR001841",
"IPR013083"
],
"PANTHER": [
"PTHR24103",
"PTHR24103:SF259"
],
"Pfam": [
"PF13765",
"PF11002",
"PF00622",
"PF15227"
],
"PRINTS": [
"PR01407"
],
"SMART": [
"SM00589",
"SM00449"
],
"SUPFAM": [
"SSF49899",
"SSF57850"
],
"PROSITE": [
"PS50188",
"PS50089"
]
},
"citations": [
{
"title": "Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts.",
"pubmedID": "10508838",
"doi": "10.1101\/gr.9.9.803"
},
{
"title": "A genome annotation-driven approach to cloning the human ORFeome.",
"pubmedID": "15461802",
"doi": "10.1186\/gb-2004-5-10-r84"
},
{
"title": "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).",
"pubmedID": "15489334",
"doi": "10.1101\/gr.2596504"
},
{
"title": "Primate-specific RFPL1 gene controls cell-cycle progression through cyclin B1\/Cdc2 degradation.",
"pubmedID": "20725088",
"doi": "10.1038\/cdd.2010.102"
}
],
"sequence": {
"length": 317,
"mass": 35491,
"checksum": "75FDDED7BF51B8CA",
"modified": {
"$date": {
"$numberLong": "1110844800000"
}
},
"version": 2,
"sequence": "MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK"
},
"existence": 0,
"relevance": 1,
"proteinID": 2165872911
}
],
"singleCellExpressions": {
"cellSignificanceIndex": []
}
}