Details for: IGLV3 19

Gene ID: 28797

Gene Type:  Other  - A known gene or region type that lacks a specific category. Includes immunoglobulin (Ig), T-cell receptor (TCR) gene segments, and repetitive elements.

Symbol: IGLV3 19

Ensembl ID: ENSG00000211663

Description: immunoglobulin lambda variable 3-19

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • IgA plasma cell CL0000987
    CSI 5.67
    rCSI 5.81%
    PRS 99.31
  • plasmablast CL0000980
    CSI 5.64
    rCSI 4.44%
    PRS 99.74
  • CD4-positive, alpha-beta T cell CL0000624
    CSI 5.59
    rCSI 7.16%
    PRS 100
  • IgG plasma cell CL0000985
    CSI 4.07
    rCSI 4.88%
    PRS 99.83

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

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  • Node Size: Proportional to Target Cell CSI magnitude
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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [IGLV3 19](/details-gene/28797) is a V (variable) gene segment located on chromosome 22 that encodes a component of the immunoglobulin lambda light chain. As a fundamental element of the adaptive immune system, its primary molecular function is [Antigen binding](/details-ontologies/GO:0003823), contributing to the vast diversity of antibodies. **Overall**, expression analysis indicates that [IGLV3 19](/details-gene/28797) is a highly significant gene in terminally differentiated B-lymphocytes, with its highest significance observed in antibody-secreting cells such as [IgA plasma cell](/details-cell/CL0000987) and [plasmablast](/details-cell/CL0000980). This expression pattern underscores its essential role in the humoral immune response. ## Cellular Roles and Expression Landscape The expression profile of [IGLV3 19](/details-gene/28797) firmly establishes its role within the B cell lineage, particularly during the final stages of differentiation into antibody-producing cells. The gene shows the highest significance in [IgA plasma cell](/details-cell/CL0000987) (CSI: 5.67) and [plasmablast](/details-cell/CL0000980) (CSI: 5.64), which are key effectors of humoral immunity responsible for secreting large quantities of antibodies. Its high significance is also noted in [IgG plasma cell](/details-cell/CL0000985) (CSI: 4.07), further cementing its importance across different immunoglobulin isotypes. Interestingly, a high significance score is also observed in [CD4-positive, alpha-beta T cell](/details-cell/CL0000624) (CSI: 5.59). While T cells do not produce immunoglobulins, this finding may reflect the close immunoregulatory interactions between T helper cells and B cells during affinity maturation and class switching, or potential cell-cell doublets in single-cell datasets. This suggests that the gene's activity is most pronounced in cellular contexts defined by active antibody production and T-cell-dependent B-cell activation. ## Pathways and Molecular Function The functional annotations for [IGLV3 19](/details-gene/28797) are consistent with its role as a core component of the antibody repertoire. Gene Ontology terms place it centrally in the [Adaptive immune response](/details-ontologies/GO:0002250) and define its function as [Antigen binding](/details-ontologies/GO:0003823). It is annotated as a component of the [Immunoglobulin complex](/details-ontologies/GO:0019814) and is found in the [Extracellular region](/details-ontologies/GO:0005576), which is expected for a secreted antibody protein. Reactome pathway analysis provides a more granular view of its involvement in immunity. The gene is integral to the overarching [Adaptive immune system](/details-ontologies/R-HSA-1280218) and specifically to [Signaling by the b cell receptor (bcr)](https://reactome.org/content/detail/R-HSA-983705). Once incorporated into an antibody, it participates in downstream effector functions such as [Classical antibody-mediated complement activation](https://reactome.org/content/detail/R-HSA-173623) and [Fcgamma receptor (fcgr) dependent phagocytosis](https://reactome.org/content/detail/R-HSA-2029480). Furthermore, its annotation in pathways related to [Infectious disease](https://reactome.org/content/detail/R-HSA-5663205), including [Leishmania infection](https://reactome.org/content/detail/R-HSA-9658195) and [Sars-cov infections](https://reactome.org/content/detail/R-HSA-9679506), highlights the critical role of antibodies utilizing this gene segment in host defense against a range of pathogens. ## Research Directions The specific usage of immunoglobulin gene segments can be biased in certain disease states, suggesting that antibodies incorporating [IGLV3 19](/details-gene/28797) may play a role in pathology or protective immunity. **Proposed Hypotheses:** 1. The repertoire of B cells in patients with certain autoimmune diseases or those responding to specific viral infections (e.g., SARS-CoV-2) may show a biased, over-represented usage of the [IGLV3 19](/details-gene/28797) gene segment, leading to the production of high-affinity pathogenic or neutralizing antibodies. 2. The high significance of [IGLV3 19](/details-gene/28797) in populations identified as [CD4-positive, alpha-beta T cell](/details-cell/CL0000624) may identify a specific subset of T follicular helper cells that are physically and functionally coupled with [IGLV3 19](/details-gene/28797)-expressing B cells during germinal center reactions. **Experimental Approach:** To test the hypothesis of biased V-gene usage, a powerful approach would be to perform high-throughput B-cell receptor (BCR) repertoire sequencing. One could isolate B-lymphocytes from cohorts of patients with an autoimmune disease (e.g., Sjögren's syndrome, where autoantibodies are key) and matched healthy controls. By sequencing the immunoglobulin light chain variable regions, a statistically significant enrichment of [IGLV3 19](/details-gene/28797) usage in the patient cohort's BCRs would provide strong evidence for its involvement in the disease's immunopathology. **Therapeutic Potential:** As a germline gene segment, [IGLV3 19](/details-gene/28797) itself is not a conventional drug target. However, the specific antibodies that utilize this segment can be of significant therapeutic interest. If antibodies incorporating [IGLV3 19](/details-gene/28797) are identified as pathogenic drivers of a disease (e.g., an autoantibody or an antibody promoting cancer growth), the B cell clones producing them could become therapeutic targets. Strategies could include the development of anti-idiotype antibodies or engineered CAR-T cells designed to recognize the unique antigen-binding site created by the [IGLV3 19](/details-gene/28797)-containing light chain, thereby enabling the targeted depletion of only the pathogenic B-cell population.