Details for: TUBA3C

Gene ID: 7278

Symbol: TUBA3C

Ensembl ID: ENSG00000198033

Description: tubulin alpha 3c

Associated with

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: neural progenitor cell (CL0011020)
    Fold Change: 10.2423
    Cell Significance Index: 101.3400
  • Cell Name: germ cell (CL0000586)
    Fold Change: 0.7993
    Cell Significance Index: 6.0400
  • Cell Name: CD14-low, CD16-positive monocyte (CL0002396)
    Fold Change: 0.7520
    Cell Significance Index: 18.2200
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: 0.5632
    Cell Significance Index: 5.8300
  • Cell Name: cytotoxic T cell (CL0000910)
    Fold Change: 0.4508
    Cell Significance Index: 6.5700
  • Cell Name: granulocyte monocyte progenitor cell (CL0000557)
    Fold Change: 0.2783
    Cell Significance Index: 3.1100
  • Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
    Fold Change: 0.0705
    Cell Significance Index: 1.0100
  • Cell Name: hepatoblast (CL0005026)
    Fold Change: 0.0595
    Cell Significance Index: 1.0000
  • Cell Name: early T lineage precursor (CL0002425)
    Fold Change: 0.0544
    Cell Significance Index: 0.7900
  • Cell Name: taste receptor cell (CL0000209)
    Fold Change: 0.0542
    Cell Significance Index: 0.6300
  • Cell Name: fraction A pre-pro B cell (CL0002045)
    Fold Change: 0.0385
    Cell Significance Index: 0.4600
  • Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
    Fold Change: 0.0152
    Cell Significance Index: 0.3800
  • Cell Name: mesangial cell (CL0000650)
    Fold Change: 0.0079
    Cell Significance Index: 0.1000
  • Cell Name: megakaryocyte-erythroid progenitor cell (CL0000050)
    Fold Change: 0.0073
    Cell Significance Index: 0.1000
  • Cell Name: squamous epithelial cell (CL0000076)
    Fold Change: 0.0066
    Cell Significance Index: 0.0800
  • Cell Name: epithelial cell of stomach (CL0002178)
    Fold Change: 0.0027
    Cell Significance Index: 0.3200
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.0008
    Cell Significance Index: 0.1700
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: 0.0002
    Cell Significance Index: 0.0700
  • Cell Name: anterior lens cell (CL0002223)
    Fold Change: -0.0002
    Cell Significance Index: -0.4600
  • Cell Name: pigmented epithelial cell (CL0000529)
    Fold Change: -0.0003
    Cell Significance Index: -0.4900
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: -0.0003
    Cell Significance Index: -0.4600
  • Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: -0.0011
    Cell Significance Index: -0.4100
  • Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
    Fold Change: -0.0013
    Cell Significance Index: -0.8300
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: -0.0013
    Cell Significance Index: -0.1500
  • Cell Name: ciliary muscle cell (CL1000443)
    Fold Change: -0.0014
    Cell Significance Index: -0.6200
  • Cell Name: type B pancreatic cell (CL0000169)
    Fold Change: -0.0015
    Cell Significance Index: -0.8600
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: -0.0028
    Cell Significance Index: -0.5600
  • Cell Name: cortical cell of adrenal gland (CL0002097)
    Fold Change: -0.0030
    Cell Significance Index: -0.0800
  • Cell Name: fibro/adipogenic progenitor cell (CL0009099)
    Fold Change: -0.0031
    Cell Significance Index: -0.1500
  • Cell Name: pancreatic acinar cell (CL0002064)
    Fold Change: -0.0036
    Cell Significance Index: -0.6200
  • Cell Name: stromal cell of ovary (CL0002132)
    Fold Change: -0.0040
    Cell Significance Index: -0.5500
  • Cell Name: pancreatic D cell (CL0000173)
    Fold Change: -0.0042
    Cell Significance Index: -0.8800
  • Cell Name: intermediate cell of urothelium (CL4030055)
    Fold Change: -0.0043
    Cell Significance Index: -0.7800
  • Cell Name: glial cell (CL0000125)
    Fold Change: -0.0046
    Cell Significance Index: -0.0500
  • Cell Name: pigmented ciliary epithelial cell (CL0002303)
    Fold Change: -0.0050
    Cell Significance Index: -0.7200
  • Cell Name: effector memory CD8-positive, alpha-beta T cell, terminally differentiated (CL0001062)
    Fold Change: -0.0063
    Cell Significance Index: -0.0500
  • Cell Name: pro-B cell (CL0000826)
    Fold Change: -0.0065
    Cell Significance Index: -0.0700
  • Cell Name: preadipocyte (CL0002334)
    Fold Change: -0.0067
    Cell Significance Index: -0.1300
  • Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
    Fold Change: -0.0071
    Cell Significance Index: -0.7400
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.0077
    Cell Significance Index: -0.4300
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: -0.0077
    Cell Significance Index: -0.2100
  • Cell Name: photoreceptor cell (CL0000210)
    Fold Change: -0.0093
    Cell Significance Index: -0.1300
  • Cell Name: hematopoietic stem cell (CL0000037)
    Fold Change: -0.0094
    Cell Significance Index: -0.1600
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.0096
    Cell Significance Index: -0.2100
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: -0.0107
    Cell Significance Index: -0.8200
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.0112
    Cell Significance Index: -0.7500
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.0114
    Cell Significance Index: -0.4000
  • Cell Name: GABAergic neuron (CL0000617)
    Fold Change: -0.0119
    Cell Significance Index: -0.1500
  • Cell Name: CD14-positive monocyte (CL0001054)
    Fold Change: -0.0138
    Cell Significance Index: -0.2700
  • Cell Name: granulosa cell (CL0000501)
    Fold Change: -0.0141
    Cell Significance Index: -0.3700
  • Cell Name: lens fiber cell (CL0011004)
    Fold Change: -0.0145
    Cell Significance Index: -0.4600
  • Cell Name: glutamatergic neuron (CL0000679)
    Fold Change: -0.0147
    Cell Significance Index: -0.1600
  • Cell Name: hematopoietic multipotent progenitor cell (CL0000837)
    Fold Change: -0.0149
    Cell Significance Index: -0.1800
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: -0.0153
    Cell Significance Index: -0.9400
  • Cell Name: syncytiotrophoblast cell (CL0000525)
    Fold Change: -0.0158
    Cell Significance Index: -0.1500
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: -0.0161
    Cell Significance Index: -0.4300
  • Cell Name: type I muscle cell (CL0002211)
    Fold Change: -0.0164
    Cell Significance Index: -0.4000
  • Cell Name: keratinocyte (CL0000312)
    Fold Change: -0.0164
    Cell Significance Index: -0.4100
  • Cell Name: indirect pathway medium spiny neuron (CL4023029)
    Fold Change: -0.0167
    Cell Significance Index: -0.7400
  • Cell Name: dendritic cell (CL0000451)
    Fold Change: -0.0169
    Cell Significance Index: -0.2200
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.0176
    Cell Significance Index: -0.5600
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.0180
    Cell Significance Index: -0.5900
  • Cell Name: hematopoietic cell (CL0000988)
    Fold Change: -0.0191
    Cell Significance Index: -0.2800
  • Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
    Fold Change: -0.0202
    Cell Significance Index: -0.4200
  • Cell Name: direct pathway medium spiny neuron (CL4023026)
    Fold Change: -0.0234
    Cell Significance Index: -0.8900
  • Cell Name: corneal endothelial cell (CL0000132)
    Fold Change: -0.0243
    Cell Significance Index: -0.3700
  • Cell Name: corneal epithelial cell (CL0000575)
    Fold Change: -0.0246
    Cell Significance Index: -0.3500
  • Cell Name: type II muscle cell (CL0002212)
    Fold Change: -0.0248
    Cell Significance Index: -0.4000
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: -0.0249
    Cell Significance Index: -0.7000
  • Cell Name: skeletal muscle fiber (CL0008002)
    Fold Change: -0.0250
    Cell Significance Index: -0.6400
  • Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
    Fold Change: -0.0265
    Cell Significance Index: -0.6600
  • Cell Name: erythrocyte (CL0000232)
    Fold Change: -0.0267
    Cell Significance Index: -0.6800
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: -0.0271
    Cell Significance Index: -0.3700
  • Cell Name: megakaryocyte (CL0000556)
    Fold Change: -0.0278
    Cell Significance Index: -0.4500
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: -0.0281
    Cell Significance Index: -0.8000
  • Cell Name: adipocyte of breast (CL0002617)
    Fold Change: -0.0286
    Cell Significance Index: -0.3600
  • Cell Name: basal cell of epidermis (CL0002187)
    Fold Change: -0.0290
    Cell Significance Index: -0.4400
  • Cell Name: caudal ganglionic eminence derived cortical interneuron (CL4023064)
    Fold Change: -0.0296
    Cell Significance Index: -0.5900
  • Cell Name: lung ciliated cell (CL1000271)
    Fold Change: -0.0296
    Cell Significance Index: -0.2900
  • Cell Name: plasmacytoid dendritic cell (CL0000784)
    Fold Change: -0.0297
    Cell Significance Index: -0.3900
  • Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
    Fold Change: -0.0305
    Cell Significance Index: -0.6600
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: -0.0306
    Cell Significance Index: -0.9000
  • Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
    Fold Change: -0.0306
    Cell Significance Index: -0.6500
  • Cell Name: suprabasal keratinocyte (CL4033013)
    Fold Change: -0.0308
    Cell Significance Index: -0.5000
  • Cell Name: precursor B cell (CL0000817)
    Fold Change: -0.0309
    Cell Significance Index: -0.4000
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: -0.0320
    Cell Significance Index: -0.8600
  • Cell Name: VIP GABAergic cortical interneuron (CL4023016)
    Fold Change: -0.0329
    Cell Significance Index: -0.6600
  • Cell Name: epithelial cell (CL0000066)
    Fold Change: -0.0332
    Cell Significance Index: -0.3500
  • Cell Name: sst GABAergic cortical interneuron (CL4023017)
    Fold Change: -0.0334
    Cell Significance Index: -0.6600
  • Cell Name: luminal epithelial cell of mammary gland (CL0002326)
    Fold Change: -0.0334
    Cell Significance Index: -0.4300
  • Cell Name: neutrophil (CL0000775)
    Fold Change: -0.0336
    Cell Significance Index: -0.4200
  • Cell Name: erythroid progenitor cell (CL0000038)
    Fold Change: -0.0336
    Cell Significance Index: -0.4400
  • Cell Name: lymphoid lineage restricted progenitor cell (CL0000838)
    Fold Change: -0.0339
    Cell Significance Index: -0.4300
  • Cell Name: stromal cell (CL0000499)
    Fold Change: -0.0343
    Cell Significance Index: -0.3500
  • Cell Name: OFF midget ganglion cell (CL4033047)
    Fold Change: -0.0353
    Cell Significance Index: -0.4400
  • Cell Name: GABAergic amacrine cell (CL4030027)
    Fold Change: -0.0355
    Cell Significance Index: -0.4400
  • Cell Name: sncg GABAergic cortical interneuron (CL4023015)
    Fold Change: -0.0361
    Cell Significance Index: -0.7100
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.0377
    Cell Significance Index: -0.4500
  • Cell Name: cardiac muscle cell (CL0000746)
    Fold Change: -0.0379
    Cell Significance Index: -0.5600
  • Cell Name: mesothelial cell (CL0000077)
    Fold Change: -0.0383
    Cell Significance Index: -0.4700

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics** TUBA3C is a member of the tubulin gene family, which consists of 13 genes that encode for alpha, beta, gamma, and delta subunits of microtubules. The alpha subunits are the most abundant and diverse subunits, and TUBA3C is one of the 13 alpha subunit genes. The gene is located on chromosome 15q24 and is highly conserved across species. TUBA3C is a single exon gene that encodes a 157-amino acid protein. **Pathways and Functions** TUBA3C is involved in various cellular pathways, including: 1. **Activation of AMPK downstream of NMDARs**: TUBA3C is a component of the NMDA receptor complex, which is involved in the activation of AMPK (AMP-activated protein kinase) downstream of NMDARs (N-methyl-D-aspartate receptors). 2. **Assembly and cell surface presentation of NMDA receptors**: TUBA3C is involved in the assembly and cell surface presentation of NMDA receptors, which are critical for synaptic plasticity and learning. 3. **Autophagy**: TUBA3C is involved in the regulation of autophagy, a process by which cells recycle damaged or dysfunctional components. 4. **Mitotic spindle formation**: TUBA3C is involved in the formation of the mitotic spindle, a structure that separates chromosomes during cell division. 5. **Ciliary basal body**: TUBA3C is involved in the assembly and function of the ciliary basal body, a structure that is essential for ciliary motility. 6. **Cytoplasmic organization**: TUBA3C is involved in the organization of the cytoskeleton, which is critical for maintaining cell shape and structure. **Clinical Significance** Dysregulation of TUBA3C has been implicated in various diseases, including: 1. **Neurological disorders**: TUBA3C has been implicated in the pathogenesis of neurological disorders, such as Alzheimer's disease, Parkinson's disease, and Huntington's disease. 2. **Cancer**: TUBA3C has been implicated in the development and progression of various cancers, including breast cancer, lung cancer, and colon cancer. 3. **Immune system disorders**: TUBA3C has been implicated in the pathogenesis of immune system disorders, such as multiple sclerosis and rheumatoid arthritis. 4. **Developmental disorders**: TUBA3C has been implicated in the development of developmental disorders, such as autism spectrum disorder and schizophrenia. In conclusion, TUBA3C is a critical gene that plays a vital role in various cellular processes, including cell division, transport, and signaling. Dysregulation of TUBA3C has been implicated in various diseases, highlighting the importance of further research into the function and regulation of this gene.

Genular Protein ID: 2542540467

Symbol: TBA3C_HUMAN

Name: Tubulin alpha-3C chain

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 9465305

Title: Sequence characterization of a newly identified human alpha-tubulin gene (TUBA2).

PubMed ID: 9465305

DOI: 10.1006/geno.1997.5081

PubMed ID: 15057823

Title: The DNA sequence and analysis of human chromosome 13.

PubMed ID: 15057823

DOI: 10.1038/nature02379

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 19524510

Title: Evolutionary divergence of enzymatic mechanisms for posttranslational polyglycylation.

PubMed ID: 19524510

DOI: 10.1016/j.cell.2009.05.020

PubMed ID: 24906155

Title: Molecular basis for age-dependent microtubule acetylation by tubulin acetyltransferase.

PubMed ID: 24906155

DOI: 10.1016/j.cell.2014.03.061

PubMed ID: 25908662

Title: Mitosis. Microtubule detyrosination guides chromosomes during mitosis.

PubMed ID: 25908662

DOI: 10.1126/science.aaa5175

PubMed ID: 26875866

Title: Graded control of microtubule severing by tubulin glutamylation.

PubMed ID: 26875866

DOI: 10.1016/j.cell.2016.01.019

PubMed ID: 26972003

Title: Alpha-tubulin tyrosination and CLIP-170 phosphorylation regulate the initiation of dynein-driven transport in neurons.

PubMed ID: 26972003

DOI: 10.1016/j.celrep.2016.02.046

PubMed ID: 29146869

Title: Vasohibins encode tubulin detyrosinating activity.

PubMed ID: 29146869

DOI: 10.1126/science.aao5676

PubMed ID: 35482892

Title: Posttranslational modification of microtubules by the MATCAP detyrosinase.

PubMed ID: 35482892

DOI: 10.1126/science.abn6020

Sequence Information:

  • Length: 450
  • Mass: 49960
  • Checksum: 2A78714CBA782D55
  • Sequence:
  • MRECISIHVG QAGVQIGNAC WELYCLEHGI QPDGQMPSDK TIGGGDDSFN TFFSETGAGK 
    HVPRAVFVDL EPTVVDEVRT GTYRQLFHPE QLITGKEDAA NNYARGHYTI GKEIVDLVLD 
    RIRKLADLCT GLQGFLIFHS FGGGTGSGFA SLLMERLSVD YGKKSKLEFA IYPAPQVSTA 
    VVEPYNSILT THTTLEHSDC AFMVDNEAIY DICRRNLDIE RPTYTNLNRL IGQIVSSITA 
    SLRFDGALNV DLTEFQTNLV PYPRIHFPLA TYAPVISAEK AYHEQLSVAE ITNACFEPAN 
    QMVKCDPRHG KYMACCMLYR GDVVPKDVNA AIATIKTKRT IQFVDWCPTG FKVGINYQPP 
    TVVPGGDLAK VQRAVCMLSN TTAIAEAWAR LDHKFDLMYA KRAFVHWYVG EGMEEGEFSE 
    AREDLAALEK DYEEVGVDSV EAEAEEGEEY

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.