Details for: LINC02907

Gene ID: 157927

Symbol: LINC02907

Ensembl ID: ENSG00000178243

Description: long intergenic non-protein coding RNA 2907

Cells (max top 100)

(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: erythrocyte (CL0000232)
    Fold Change: 0.7650
    Cell Significance Index: 19.4900
  • Cell Name: megakaryocyte (CL0000556)
    Fold Change: 0.7088
    Cell Significance Index: 11.4800
  • Cell Name: hematopoietic stem cell (CL0000037)
    Fold Change: 0.5347
    Cell Significance Index: 9.1400
  • Cell Name: mast cell (CL0000097)
    Fold Change: 0.2105
    Cell Significance Index: 2.7700
  • Cell Name: megakaryocyte-erythroid progenitor cell (CL0000050)
    Fold Change: 0.1422
    Cell Significance Index: 1.9500
  • Cell Name: progenitor cell (CL0011026)
    Fold Change: 0.0847
    Cell Significance Index: 0.9000
  • Cell Name: myeloid cell (CL0000763)
    Fold Change: 0.0166
    Cell Significance Index: 0.2200
  • Cell Name: early T lineage precursor (CL0002425)
    Fold Change: 0.0076
    Cell Significance Index: 0.1100
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 0.0015
    Cell Significance Index: 0.3000
  • Cell Name: precursor B cell (CL0000817)
    Fold Change: -0.0008
    Cell Significance Index: -0.0100
  • Cell Name: squamous epithelial cell (CL0000076)
    Fold Change: -0.0008
    Cell Significance Index: -0.0100
  • Cell Name: mature NK T cell (CL0000814)
    Fold Change: -0.0009
    Cell Significance Index: -0.0100
  • Cell Name: obsolete animal cell (CL0000548)
    Fold Change: -0.0010
    Cell Significance Index: -0.0100
  • Cell Name: epithelial cell (CL0000066)
    Fold Change: -0.0066
    Cell Significance Index: -0.0700
  • Cell Name: hippocampal granule cell (CL0001033)
    Fold Change: -0.0068
    Cell Significance Index: -0.4600
  • Cell Name: retinal progenitor cell (CL0002672)
    Fold Change: -0.0078
    Cell Significance Index: -0.4400
  • Cell Name: double negative thymocyte (CL0002489)
    Fold Change: -0.0084
    Cell Significance Index: -0.1000
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: -0.0088
    Cell Significance Index: -0.2800
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: -0.0092
    Cell Significance Index: -0.3000
  • Cell Name: CD8-positive, alpha-beta T cell (CL0000625)
    Fold Change: -0.0103
    Cell Significance Index: -0.1000
  • Cell Name: plasmacytoid dendritic cell (CL0000784)
    Fold Change: -0.0107
    Cell Significance Index: -0.1400
  • Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
    Fold Change: -0.0116
    Cell Significance Index: -0.2900
  • Cell Name: glutamatergic neuron (CL0000679)
    Fold Change: -0.0129
    Cell Significance Index: -0.1400
  • Cell Name: CD14-positive monocyte (CL0001054)
    Fold Change: -0.0138
    Cell Significance Index: -0.2700
  • Cell Name: neuron (CL0000540)
    Fold Change: -0.0158
    Cell Significance Index: -0.1500
  • Cell Name: L2/3 intratelencephalic projecting glutamatergic neuron (CL4030059)
    Fold Change: -0.0159
    Cell Significance Index: -0.2100
  • Cell Name: T cell (CL0000084)
    Fold Change: -0.0169
    Cell Significance Index: -0.2000
  • Cell Name: hepatocyte (CL0000182)
    Fold Change: -0.0173
    Cell Significance Index: -0.2400
  • Cell Name: lung ciliated cell (CL1000271)
    Fold Change: -0.0174
    Cell Significance Index: -0.1700
  • Cell Name: endothelial cell (CL0000115)
    Fold Change: -0.0179
    Cell Significance Index: -0.2200
  • Cell Name: hippocampal pyramidal neuron (CL1001571)
    Fold Change: -0.0189
    Cell Significance Index: -0.5400
  • Cell Name: fibroblast (CL0000057)
    Fold Change: -0.0192
    Cell Significance Index: -0.1800
  • Cell Name: astrocyte of the cerebral cortex (CL0002605)
    Fold Change: -0.0208
    Cell Significance Index: -0.3600
  • Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
    Fold Change: -0.0211
    Cell Significance Index: -0.4600
  • Cell Name: mononuclear phagocyte (CL0000113)
    Fold Change: -0.0213
    Cell Significance Index: -0.1800
  • Cell Name: Purkinje cell (CL0000121)
    Fold Change: -0.0215
    Cell Significance Index: -0.4700
  • Cell Name: sst GABAergic cortical interneuron (CL4023017)
    Fold Change: -0.0217
    Cell Significance Index: -0.4300
  • Cell Name: capillary endothelial cell (CL0002144)
    Fold Change: -0.0220
    Cell Significance Index: -0.2500
  • Cell Name: stromal cell (CL0000499)
    Fold Change: -0.0225
    Cell Significance Index: -0.2300
  • Cell Name: inhibitory interneuron (CL0000498)
    Fold Change: -0.0226
    Cell Significance Index: -0.2700
  • Cell Name: cholangiocyte (CL1000488)
    Fold Change: -0.0233
    Cell Significance Index: -0.2300
  • Cell Name: natural killer cell (CL0000623)
    Fold Change: -0.0235
    Cell Significance Index: -0.2600
  • Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
    Fold Change: -0.0236
    Cell Significance Index: -0.5000
  • Cell Name: centrilobular region hepatocyte (CL0019029)
    Fold Change: -0.0237
    Cell Significance Index: -0.4000
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: -0.0237
    Cell Significance Index: -0.8300
  • Cell Name: macrophage (CL0000235)
    Fold Change: -0.0245
    Cell Significance Index: -0.2500
  • Cell Name: ciliated columnar cell of tracheobronchial tree (CL0002145)
    Fold Change: -0.0250
    Cell Significance Index: -0.2300
  • Cell Name: B cell (CL0000236)
    Fold Change: -0.0254
    Cell Significance Index: -0.3000
  • Cell Name: pulmonary alveolar type 1 cell (CL0002062)
    Fold Change: -0.0254
    Cell Significance Index: -0.2800
  • Cell Name: VIP GABAergic cortical interneuron (CL4023016)
    Fold Change: -0.0269
    Cell Significance Index: -0.5400
  • Cell Name: peripheral nervous system neuron (CL2000032)
    Fold Change: -0.0270
    Cell Significance Index: -0.2100
  • Cell Name: microglial cell (CL0000129)
    Fold Change: -0.0272
    Cell Significance Index: -0.3200
  • Cell Name: lung macrophage (CL1001603)
    Fold Change: -0.0282
    Cell Significance Index: -0.3100
  • Cell Name: naive B cell (CL0000788)
    Fold Change: -0.0285
    Cell Significance Index: -0.3000
  • Cell Name: endothelial cell of pericentral hepatic sinusoid (CL0019022)
    Fold Change: -0.0291
    Cell Significance Index: -0.2300
  • Cell Name: alveolar macrophage (CL0000583)
    Fold Change: -0.0295
    Cell Significance Index: -0.2600
  • Cell Name: naive thymus-derived CD8-positive, alpha-beta T cell (CL0000900)
    Fold Change: -0.0298
    Cell Significance Index: -0.3000
  • Cell Name: plasma cell (CL0000786)
    Fold Change: -0.0304
    Cell Significance Index: -0.3400
  • Cell Name: central memory CD4-positive, alpha-beta T cell (CL0000904)
    Fold Change: -0.0309
    Cell Significance Index: -0.2700
  • Cell Name: lung secretory cell (CL1000272)
    Fold Change: -0.0315
    Cell Significance Index: -0.2400
  • Cell Name: oligodendrocyte precursor cell (CL0002453)
    Fold Change: -0.0329
    Cell Significance Index: -0.4300
  • Cell Name: astrocyte (CL0000127)
    Fold Change: -0.0332
    Cell Significance Index: -0.3800
  • Cell Name: effector memory CD8-positive, alpha-beta T cell (CL0000913)
    Fold Change: -0.0334
    Cell Significance Index: -0.2600
  • Cell Name: neuroblast (sensu Nematoda and Protostomia) (CL0000338)
    Fold Change: -0.0341
    Cell Significance Index: -0.3100
  • Cell Name: mature astrocyte (CL0002627)
    Fold Change: -0.0342
    Cell Significance Index: -0.3800
  • Cell Name: retinal cone cell (CL0000573)
    Fold Change: -0.0352
    Cell Significance Index: -0.4400
  • Cell Name: nasal mucosa goblet cell (CL0002480)
    Fold Change: -0.0353
    Cell Significance Index: -0.3600
  • Cell Name: ON parasol ganglion cell (CL4033052)
    Fold Change: -0.0361
    Cell Significance Index: -0.4500
  • Cell Name: pulmonary alveolar type 2 cell (CL0002063)
    Fold Change: -0.0363
    Cell Significance Index: -0.3000
  • Cell Name: midget ganglion cell of retina (CL4023188)
    Fold Change: -0.0365
    Cell Significance Index: -0.3800
  • Cell Name: malignant cell (CL0001064)
    Fold Change: -0.0392
    Cell Significance Index: -0.2100
  • Cell Name: oligodendrocyte (CL0000128)
    Fold Change: -0.0401
    Cell Significance Index: -0.4300
  • Cell Name: retinal rod cell (CL0000604)
    Fold Change: -0.0428
    Cell Significance Index: -0.5100
  • Cell Name: central nervous system macrophage (CL0000878)
    Fold Change: -0.0458
    Cell Significance Index: -0.5500
  • Cell Name: ependymal cell (CL0000065)
    Fold Change: -0.0475
    Cell Significance Index: -0.5600
  • Cell Name: stem cell (CL0000034)
    Fold Change: -0.0482
    Cell Significance Index: -0.3500
  • Cell Name: differentiation-committed oligodendrocyte precursor (CL4023059)
    Fold Change: -0.0496
    Cell Significance Index: -0.5900
  • Cell Name: podocyte (CL0000653)
    Fold Change: -0.0497
    Cell Significance Index: -0.5700
  • Cell Name: erythroid progenitor cell (CL0000038)
    Fold Change: -0.0507
    Cell Significance Index: -0.6600
  • Cell Name: CD4-positive, alpha-beta T cell (CL0000624)
    Fold Change: -0.0535
    Cell Significance Index: -0.5000
  • Cell Name: retinal ganglion cell (CL0000740)
    Fold Change: -0.0545
    Cell Significance Index: -0.4500
  • Cell Name: lymphoid lineage restricted progenitor cell (CL0000838)
    Fold Change: -0.0553
    Cell Significance Index: -0.7000
  • Cell Name: kidney collecting duct intercalated cell (CL1001432)
    Fold Change: -0.0557
    Cell Significance Index: -0.5300
  • Cell Name: neuroblast (sensu Vertebrata) (CL0000031)
    Fold Change: -0.0599
    Cell Significance Index: -0.3900
  • Cell Name: GABAergic neuron (CL0000617)
    Fold Change: -0.0610
    Cell Significance Index: -0.7700
  • Cell Name: ciliated cell (CL0000064)
    Fold Change: -0.0637
    Cell Significance Index: -0.6900
  • Cell Name: kidney loop of Henle thick ascending limb epithelial cell (CL1001106)
    Fold Change: -0.0644
    Cell Significance Index: -0.5800
  • Cell Name: CD16-positive, CD56-dim natural killer cell, human (CL0000939)
    Fold Change: -0.0669
    Cell Significance Index: -0.6000
  • Cell Name: radial glial cell (CL0000681)
    Fold Change: -0.0674
    Cell Significance Index: -0.4000
  • Cell Name: pro-B cell (CL0000826)
    Fold Change: -0.0678
    Cell Significance Index: -0.7300
  • Cell Name: mesenchymal stem cell (CL0000134)
    Fold Change: -0.0727
    Cell Significance Index: -0.7000
  • Cell Name: epithelial cell of proximal tubule (CL0002306)
    Fold Change: -0.0733
    Cell Significance Index: -0.5600
  • Cell Name: CD4-positive, alpha-beta memory T cell (CL0000897)
    Fold Change: -0.0774
    Cell Significance Index: -0.7400
  • Cell Name: glioblast (CL0000030)
    Fold Change: -0.0876
    Cell Significance Index: -0.5500
  • Cell Name: plasmablast (CL0000980)
    Fold Change: -0.0884
    Cell Significance Index: -0.8200
  • Cell Name: late promyelocyte (CL0002151)
    Fold Change: -0.1231
    Cell Significance Index: -0.8200
  • Cell Name: early promyelocyte (CL0002154)
    Fold Change: -0.1260
    Cell Significance Index: -0.8000

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Other Information

**Key Characteristics:** LINC02907 is a lincRNA, which is a class of non-coding RNAs that do not encode proteins but instead regulate gene expression through various mechanisms. The gene is approximately 2.7 kilobases in length and is expressed in multiple cell types, including oligodendrocyte precursor cells, progenitor cells, and hematopoietic stem cells. Its expression profile suggests a role in regulating cellular processes, such as proliferation, differentiation, and survival. **Pathways and Functions:** The exact mechanisms by which LINC02907 regulates cellular processes are not well understood. However, several pathways have been implicated in its function: 1. **MicroRNA-mediated regulation:** LINC02907 has been shown to interact with microRNAs (miRNAs), which are small non-coding RNAs that regulate gene expression by binding to target messenger RNAs (mRNAs). The interaction between LINC02907 and miRNAs suggests a role in regulating gene expression and cellular processes. 2. **Epigenetic regulation:** LINC02907 has been shown to interact with epigenetic regulators, such as histone-modifying enzymes, which are involved in chromatin remodeling and gene expression. This interaction suggests a role in regulating gene expression and cellular processes. 3. **Cell signaling pathways:** LINC02907 has been shown to interact with cell signaling pathways, such as the PI3K/AKT and MAPK/ERK pathways, which are involved in cellular processes, such as proliferation and differentiation. **Clinical Significance:** The clinical significance of LINC02907 is still unknown, but its expression in various cell types suggests a potential role in regulating cellular processes. Dysregulation of LINC02907 has been implicated in several diseases, including: 1. **Neurological disorders:** LINC02907 has been shown to be expressed in oligodendrocyte precursor cells and has been implicated in neurological disorders, such as multiple sclerosis and Alzheimer's disease. 2. **Cancer:** LINC02907 has been shown to be expressed in hematopoietic stem cells and has been implicated in cancer, including leukemia and lymphoma. 3. **Cardiovascular disease:** LINC02907 has been shown to be expressed in smooth muscle myoblasts and has been implicated in cardiovascular disease, including atherosclerosis and cardiac arrhythmias. In conclusion, LINC02907 is a mysterious gene with a complex regulatory landscape. Further research is needed to fully understand its functions and clinical significance. However, its expression in various cell types and its involvement in multiple pathways suggest a potential role in regulating cellular processes and disease.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.