Details for: CACHD1

Gene ID: 57685

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: CACHD1

Ensembl ID: ENSG00000158966

Description: cache domain containing 1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

  • Calcium ion transmembrane transport
    (GO:0070588)
  • Voltage-gated calcium channel activity
    (GO:0005245)
  • Voltage-gated calcium channel complex
    (GO:0005891)

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • astrocyte of the cerebral cortex CL0002605
    CSI 18.41
    rCSI 41.27%
    PRS 69.95
  • Bergmann glial cell CL0000644
    CSI 18.07
    rCSI 24.73%
    PRS 76.63
  • astrocyte CL0000127
    CSI 16.03
    rCSI 34.15%
    PRS 61.09
  • ependymal cell CL0000065
    CSI 12.22
    rCSI 24.79%
    PRS 65.31
  • macroglial cell CL0000126
    CSI 12.16
    rCSI 31.25%
    PRS 81.31
  • ciliated epithelial cell CL0000067
    CSI 11.2
    rCSI 9.85%
    PRS 75.26
  • choroid plexus epithelial cell CL0000706
    CSI 10.64
    rCSI 17.43%
    PRS 75.98
  • respiratory basal cell CL0002633
    CSI 10.33
    rCSI 10.7%
    PRS 88.08
  • L6b glutamatergic cortical neuron CL4023038
    CSI 8.87
    rCSI 27.71%
    PRS 70.55
  • brush cell of tracheobronchial tree CL0002075
    CSI 8.81
    rCSI 26.15%
    PRS 92.04
  • fibroblast of lung CL0002553
    CSI 7.7
    rCSI 7.17%
    PRS 86.08
  • cardiac endothelial cell CL0010008
    CSI 7.69
    rCSI 31.01%
    PRS 85.43
  • vascular leptomeningeal cell CL4023051
    CSI 7.24
    rCSI 12.7%
    PRS 79.97
  • BEST4+ enteroycte CL4030026
    CSI 7.14
    rCSI 8.88%
    PRS 85.6
  • blood vessel endothelial cell CL0000071
    CSI 6.93
    rCSI 14.38%
    PRS 82.39
  • glutamatergic neuron CL0000679
    CSI 6.92
    rCSI 14.22%
    PRS 72.47
  • rod bipolar cell CL0000751
    CSI 6.86
    rCSI 12.34%
    PRS 79.21
  • myoepithelial cell CL0000185
    CSI 6.43
    rCSI 16.26%
    PRS 88.79
  • alveolar adventitial fibroblast CL4028006
    CSI 5.52
    rCSI 8.72%
    PRS 86.16
  • epithelial cell of lung CL0000082
    CSI 5.4
    rCSI 4.48%
    PRS 86.18
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 5.38
    rCSI 6.22%
    PRS 77.56
  • retinal bipolar neuron CL0000748
    CSI 5.23
    rCSI 9.79%
    PRS 74.86
  • renal interstitial pericyte CL1001318
    CSI 5.14
    rCSI 14.15%
    PRS 81.12
  • stromal cell CL0000499
    CSI 5.09
    rCSI 14.33%
    PRS 80.36
  • parietal epithelial cell CL1000452
    CSI 4.92
    rCSI 13.15%
    PRS 78.04
  • GABAergic amacrine cell CL4030027
    CSI 4.73
    rCSI 16.2%
    PRS 71.42
  • sst GABAergic cortical interneuron CL4023017
    CSI 4.68
    rCSI 6.03%
    PRS 70.23
  • fibroblast of cardiac tissue CL0002548
    CSI 4.49
    rCSI 21.5%
    PRS 85.21
  • Mueller cell CL0000636
    CSI 4.42
    rCSI 10.09%
    PRS 77.35
  • glioblast CL0000030
    CSI 4.38
    rCSI 6.98%
    PRS 76.97
  • retinal pigment epithelial cell CL0002586
    CSI 4.23
    rCSI 8.39%
    PRS 81.17
  • radial glial cell CL0000681
    CSI 4.21
    rCSI 5.85%
    PRS 83.42
  • neural crest cell CL0011012
    CSI 4.18
    rCSI 3.31%
    PRS 75.72
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 4.14
    rCSI 8.98%
    PRS 73.21
  • adipocyte CL0000136
    CSI 4.08
    rCSI 5.24%
    PRS 75.83
  • endothelial cell of placenta CL0009092
    CSI 3.91
    rCSI 19.28%
    PRS 90.84
  • amacrine cell CL0000561
    CSI 3.87
    rCSI 11.22%
    PRS 75.39
  • squamous epithelial cell CL0000076
    CSI 3.66
    rCSI 8.68%
    PRS 84.04
  • mature astrocyte CL0002627
    CSI 3.62
    rCSI 15.37%
    PRS 77.9
  • melanocyte CL0000148
    CSI 3.56
    rCSI 2.63%
    PRS 79.72
  • subcutaneous adipocyte CL0002521
    CSI 3.42
    rCSI 17.49%
    PRS 87.33
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 3.39
    rCSI 4.35%
    PRS 81.42
  • inhibitory interneuron CL0000498
    CSI 3.35
    rCSI 7.73%
    PRS 74.28
  • hepatic stellate cell CL0000632
    CSI 3.3
    rCSI 12.37%
    PRS 78.68
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 3.21
    rCSI 12.12%
    PRS 69.37
  • ciliated cell CL0000064
    CSI 3.2
    rCSI 5.19%
    PRS 80.02
  • VIP GABAergic cortical interneuron CL4023016
    CSI 3.06
    rCSI 3.66%
    PRS 69.16
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 3.06
    rCSI 17.99%
    PRS 69.51
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 3.04
    rCSI 6.93%
    PRS 78.54
  • conjunctival epithelial cell CL1000432
    CSI 3.04
    rCSI 4.64%
    PRS 84.93
  • ionocyte CL0005006
    CSI 2.91
    rCSI 3.12%
    PRS 87.06
  • OFFx cell CL4033036
    CSI 2.91
    rCSI 13.67%
    PRS 75.89
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 2.9
    rCSI 10.45%
    PRS 67
  • epithelial cell of proximal tubule CL0002306
    CSI 2.88
    rCSI 7.04%
    PRS 77.86
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 2.85
    rCSI 5.03%
    PRS 68.55
  • interneuron CL0000099
    CSI 2.78
    rCSI 5.59%
    PRS 76.98
  • lung pericyte CL0009089
    CSI 2.76
    rCSI 7.28%
    PRS 90.25
  • cerebral cortex endothelial cell CL1001602
    CSI 2.74
    rCSI 4.74%
    PRS 77.82
  • epicardial adipocyte CL1000309
    CSI 2.73
    rCSI 8.88%
    PRS 82.21
  • duct epithelial cell CL0000068
    CSI 2.67
    rCSI 3.9%
    PRS 89.31
  • chondrocyte CL0000138
    CSI 2.62
    rCSI 4.16%
    PRS 78.96
  • diffuse bipolar 3a cell CL4033029
    CSI 2.52
    rCSI 17.12%
    PRS 77.15
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 2.5
    rCSI 4.19%
    PRS 69.02
  • stem cell CL0000034
    CSI 2.41
    rCSI 2.32%
    PRS 79.87
  • alveolar type 1 fibroblast cell CL4028004
    CSI 2.4
    rCSI 2.62%
    PRS 86.71
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.38
    rCSI 1.84%
    PRS 88.37
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 2.34
    rCSI 5.7%
    PRS 66.86
  • endothelial cell of arteriole CL1000412
    CSI 2.29
    rCSI 12.68%
    PRS 91.83
  • lung secretory cell CL1000272
    CSI 2.28
    rCSI 5.63%
    PRS 85.58
  • direct pathway medium spiny neuron CL4023026
    CSI 2.25
    rCSI 53.96%
    PRS 66.88
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.23
    rCSI 53.78%
    PRS 67.32
  • kidney connecting tubule epithelial cell CL1000768
    CSI 2.2
    rCSI 5.57%
    PRS 76.94
  • retinal blood vessel endothelial cell CL0002585
    CSI 2.04
    rCSI 3.26%
    PRS 88.28
  • basal cell CL0000646
    CSI 2.01
    rCSI 2.69%
    PRS 82.84
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 1.95
    rCSI 3.54%
    PRS 77.23
  • pulmonary alveolar type 2 cell CL0002063
    CSI 1.91
    rCSI 2.96%
    PRS 87.66
  • respiratory suprabasal cell CL4033048
    CSI 1.81
    rCSI 2.33%
    PRS 87.73
  • ON parasol ganglion cell CL4033052
    CSI 1.73
    rCSI 24.55%
    PRS 76.64
  • renal principal cell CL0005009
    CSI 1.7
    rCSI 4.43%
    PRS 84.76
  • lung ciliated cell CL1000271
    CSI 1.62
    rCSI 1.87%
    PRS 78.48
  • neural progenitor cell CL0011020
    CSI 1.6
    rCSI 7.04%
    PRS 73.8
  • retinal ganglion cell CL0000740
    CSI 1.58
    rCSI 3.49%
    PRS 72.29
  • multi-ciliated epithelial cell CL0005012
    CSI 1.54
    rCSI 1.53%
    PRS 79.45
  • keratocyte CL0002363
    CSI 1.51
    rCSI 3.63%
    PRS 86.98
  • tendon cell CL0000388
    CSI 1.49
    rCSI 3.87%
    PRS 89.67
  • invaginating midget bipolar cell CL4033034
    CSI 1.38
    rCSI 8.15%
    PRS 76.3
  • diffuse bipolar 1 cell CL4033027
    CSI 1.32
    rCSI 9.96%
    PRS 74.71
  • diffuse bipolar 6 cell CL4033032
    CSI 1.31
    rCSI 6.9%
    PRS 75.45
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.31
    rCSI 2.11%
    PRS 70.42
  • dopaminergic neuron CL0000700
    CSI 1.3
    rCSI 7.35%
    PRS 72.37
  • glial cell CL0000125
    CSI 1.25
    rCSI 4.78%
    PRS 76.97
  • GABAergic neuron CL0000617
    CSI 1.25
    rCSI 4.19%
    PRS 69.88
  • endothelial cell of vascular tree CL0002139
    CSI 1.25
    rCSI 6.81%
    PRS 81.42
  • starburst amacrine cell CL0004232
    CSI 1.1
    rCSI 9.26%
    PRS 72.46
  • stromal cell of ovary CL0002132
    CSI 1
    rCSI 2.74%
    PRS 89.92
  • mesothelial cell CL0000077
    CSI 0.98
    rCSI 3.85%
    PRS 64.98
  • midbrain dopaminergic neuron CL2000097
    CSI 0.92
    rCSI 5.88%
    PRS 79.95
  • GABAergic interneuron CL0011005
    CSI 0.9
    rCSI 14.13%
    PRS 86.07
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 0.88
    rCSI 2.11%
    PRS 72.87
  • airway submucosal gland duct basal cell CL4033024
    CSI 0.84
    rCSI 5.38%
    PRS 88
  • mesenchymal stem cell CL0000134
    CSI 0.2
    rCSI 1.7%
    PRS 88.7%
  • medium spiny neuron CL1001474
    CSI 0.3
    rCSI 2.1%
    PRS 74.6%
  • ON midget ganglion cell CL4033046
    CSI 0.4
    rCSI 8.3%
    PRS 75.3%
  • kidney distal convoluted tubule epithelial cell CL1000849
    CSI 0.6
    rCSI 5.9%
    PRS 81.2%
  • diffuse bipolar 4 cell CL4033031
    CSI 0.6
    rCSI 7.0%
    PRS 73.4%
  • blood vessel smooth muscle cell CL0019018
    CSI 0.7
    rCSI 5.3%
    PRS 80.4%
  • central nervous system neuron CL2000029
    CSI 0.7
    rCSI 4.9%
    PRS 74.0%
  • OFF midget ganglion cell CL4033047
    CSI 0.8
    rCSI 15.9%
    PRS 76.2%
  • endothelial cell of uterus CL0009095
    CSI 0.8
    rCSI 5.9%
    PRS 90.7%
  • flat midget bipolar cell CL4033033
    CSI 0.8
    rCSI 5.8%
    PRS 75.7%
  • airway submucosal gland duct basal cell CL4033024
    CSI 0.8
    rCSI 5.4%
    PRS 88.0%
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 0.9
    rCSI 2.1%
    PRS 72.9%
  • GABAergic interneuron CL0011005
    CSI 0.9
    rCSI 14.1%
    PRS 86.1%
  • midbrain dopaminergic neuron CL2000097
    CSI 0.9
    rCSI 5.9%
    PRS 80.0%
  • mesothelial cell CL0000077
    CSI 1.0
    rCSI 3.9%
    PRS 65.0%
  • stromal cell of ovary CL0002132
    CSI 1.0
    rCSI 2.7%
    PRS 89.9%
  • starburst amacrine cell CL0004232
    CSI 1.1
    rCSI 9.3%
    PRS 72.5%
  • endothelial cell of vascular tree CL0002139
    CSI 1.3
    rCSI 6.8%
    PRS 81.4%
  • GABAergic neuron CL0000617
    CSI 1.3
    rCSI 4.2%
    PRS 69.9%
  • glial cell CL0000125
    CSI 1.3
    rCSI 4.8%
    PRS 77.0%
  • dopaminergic neuron CL0000700
    CSI 1.3
    rCSI 7.4%
    PRS 72.4%
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.3
    rCSI 2.1%
    PRS 70.4%
  • diffuse bipolar 6 cell CL4033032
    CSI 1.3
    rCSI 6.9%
    PRS 75.5%
  • diffuse bipolar 1 cell CL4033027
    CSI 1.3
    rCSI 10.0%
    PRS 74.7%
  • invaginating midget bipolar cell CL4033034
    CSI 1.4
    rCSI 8.2%
    PRS 76.3%
  • tendon cell CL0000388
    CSI 1.5
    rCSI 3.9%
    PRS 89.7%
  • keratocyte CL0002363
    CSI 1.5
    rCSI 3.6%
    PRS 87.0%
  • multi-ciliated epithelial cell CL0005012
    CSI 1.5
    rCSI 1.5%
    PRS 79.5%
  • retinal ganglion cell CL0000740
    CSI 1.6
    rCSI 3.5%
    PRS 72.3%
  • neural progenitor cell CL0011020
    CSI 1.6
    rCSI 7.0%
    PRS 73.8%
  • lung ciliated cell CL1000271
    CSI 1.6
    rCSI 1.9%
    PRS 78.5%
  • renal principal cell CL0005009
    CSI 1.7
    rCSI 4.4%
    PRS 84.8%
  • ON parasol ganglion cell CL4033052
    CSI 1.7
    rCSI 24.6%
    PRS 76.6%
  • respiratory suprabasal cell CL4033048
    CSI 1.8
    rCSI 2.3%
    PRS 87.7%
  • pulmonary alveolar type 2 cell CL0002063
    CSI 1.9
    rCSI 3.0%
    PRS 87.7%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 2.0
    rCSI 3.5%
    PRS 77.2%
  • basal cell CL0000646
    CSI 2.0
    rCSI 2.7%
    PRS 82.8%
  • retinal blood vessel endothelial cell CL0002585
    CSI 2.0
    rCSI 3.3%
    PRS 88.3%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 2.2
    rCSI 5.6%
    PRS 76.9%
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.2
    rCSI 53.8%
    PRS 67.3%
  • direct pathway medium spiny neuron CL4023026
    CSI 2.3
    rCSI 54.0%
    PRS 66.9%
  • lung secretory cell CL1000272
    CSI 2.3
    rCSI 5.6%
    PRS 85.6%
  • endothelial cell of arteriole CL1000412
    CSI 2.3
    rCSI 12.7%
    PRS 91.8%
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 2.3
    rCSI 5.7%
    PRS 66.9%
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.4
    rCSI 1.8%
    PRS 88.4%
  • alveolar type 1 fibroblast cell CL4028004
    CSI 2.4
    rCSI 2.6%
    PRS 86.7%
  • stem cell CL0000034
    CSI 2.4
    rCSI 2.3%
    PRS 79.9%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 2.5
    rCSI 4.2%
    PRS 69.0%
  • diffuse bipolar 3a cell CL4033029
    CSI 2.5
    rCSI 17.1%
    PRS 77.2%
  • chondrocyte CL0000138
    CSI 2.6
    rCSI 4.2%
    PRS 79.0%
  • duct epithelial cell CL0000068
    CSI 2.7
    rCSI 3.9%
    PRS 89.3%
  • epicardial adipocyte CL1000309
    CSI 2.7
    rCSI 8.9%
    PRS 82.2%
  • cerebral cortex endothelial cell CL1001602
    CSI 2.7
    rCSI 4.7%
    PRS 77.8%
  • lung pericyte CL0009089
    CSI 2.8
    rCSI 7.3%
    PRS 90.3%
  • interneuron CL0000099
    CSI 2.8
    rCSI 5.6%
    PRS 77.0%
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 2.9
    rCSI 5.0%
    PRS 68.6%
  • epithelial cell of proximal tubule CL0002306
    CSI 2.9
    rCSI 7.0%
    PRS 77.9%
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 2.9
    rCSI 10.5%
    PRS 67.0%
  • OFFx cell CL4033036
    CSI 2.9
    rCSI 13.7%
    PRS 75.9%
  • ionocyte CL0005006
    CSI 2.9
    rCSI 3.1%
    PRS 87.1%
  • conjunctival epithelial cell CL1000432
    CSI 3.0
    rCSI 4.6%
    PRS 84.9%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 3.0
    rCSI 6.9%
    PRS 78.5%
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 3.1
    rCSI 18.0%
    PRS 69.5%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 3.1
    rCSI 3.7%
    PRS 69.2%
  • ciliated cell CL0000064
    CSI 3.2
    rCSI 5.2%
    PRS 80.0%
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 3.2
    rCSI 12.1%
    PRS 69.4%
  • hepatic stellate cell CL0000632
    CSI 3.3
    rCSI 12.4%
    PRS 78.7%
  • inhibitory interneuron CL0000498
    CSI 3.4
    rCSI 7.7%
    PRS 74.3%
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 3.4
    rCSI 4.4%
    PRS 81.4%
  • subcutaneous adipocyte CL0002521
    CSI 3.4
    rCSI 17.5%
    PRS 87.3%
  • melanocyte CL0000148
    CSI 3.6
    rCSI 2.6%
    PRS 79.7%
  • mature astrocyte CL0002627
    CSI 3.6
    rCSI 15.4%
    PRS 77.9%
  • squamous epithelial cell CL0000076
    CSI 3.7
    rCSI 8.7%
    PRS 84.0%
  • amacrine cell CL0000561
    CSI 3.9
    rCSI 11.2%
    PRS 75.4%
  • endothelial cell of placenta CL0009092
    CSI 3.9
    rCSI 19.3%
    PRS 90.8%
  • adipocyte CL0000136
    CSI 4.1
    rCSI 5.2%
    PRS 75.8%
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 4.1
    rCSI 9.0%
    PRS 73.2%
  • neural crest cell CL0011012
    CSI 4.2
    rCSI 3.3%
    PRS 75.7%
  • radial glial cell CL0000681
    CSI 4.2
    rCSI 5.9%
    PRS 83.4%
  • retinal pigment epithelial cell CL0002586
    CSI 4.2
    rCSI 8.4%
    PRS 81.2%
  • glioblast CL0000030
    CSI 4.4
    rCSI 7.0%
    PRS 77.0%
  • Mueller cell CL0000636
    CSI 4.4
    rCSI 10.1%
    PRS 77.4%
  • fibroblast of cardiac tissue CL0002548
    CSI 4.5
    rCSI 21.5%
    PRS 85.2%
  • sst GABAergic cortical interneuron CL4023017
    CSI 4.7
    rCSI 6.0%
    PRS 70.2%
  • GABAergic amacrine cell CL4030027
    CSI 4.7
    rCSI 16.2%
    PRS 71.4%
  • parietal epithelial cell CL1000452
    CSI 4.9
    rCSI 13.2%
    PRS 78.0%
  • stromal cell CL0000499
    CSI 5.1
    rCSI 14.3%
    PRS 80.4%
  • renal interstitial pericyte CL1001318
    CSI 5.1
    rCSI 14.2%
    PRS 81.1%
  • retinal bipolar neuron CL0000748
    CSI 5.2
    rCSI 9.8%
    PRS 74.9%
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 5.4
    rCSI 6.2%
    PRS 77.6%
  • epithelial cell of lung CL0000082
    CSI 5.4
    rCSI 4.5%
    PRS 86.2%
  • alveolar adventitial fibroblast CL4028006
    CSI 5.5
    rCSI 8.7%
    PRS 86.2%
  • myoepithelial cell CL0000185
    CSI 6.4
    rCSI 16.3%
    PRS 88.8%
  • rod bipolar cell CL0000751
    CSI 6.9
    rCSI 12.3%
    PRS 79.2%
  • glutamatergic neuron CL0000679
    CSI 6.9
    rCSI 14.2%
    PRS 72.5%
  • blood vessel endothelial cell CL0000071
    CSI 6.9
    rCSI 14.4%
    PRS 82.4%
  • BEST4+ enteroycte CL4030026
    CSI 7.1
    rCSI 8.9%
    PRS 85.6%
  • vascular leptomeningeal cell CL4023051
    CSI 7.2
    rCSI 12.7%
    PRS 80.0%
  • cardiac endothelial cell CL0010008
    CSI 7.7
    rCSI 31.0%
    PRS 85.4%
  • fibroblast of lung CL0002553
    CSI 7.7
    rCSI 7.2%
    PRS 86.1%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [CACHD1](/details-gene/57685) is a protein-coding gene located on chromosome 1p31.3 that encodes the Cache domain-containing protein 1. Functional annotations strongly suggest its involvement in calcium ion transport as a component of voltage-gated calcium channels ([GO:0005891](https://www.ebi.ac.uk/QuickGO/term/GO:0005891), [GO:0005245](https://www.ebi.ac.uk/QuickGO/term/GO:0005245)). Expression data reveals that [CACHD1](/details-gene/57685) is a significant marker for various non-neuronal cell types within the central nervous system, particularly glial cells such as [astrocytes of the cerebral cortex](/details-cell/CL0002605) and [Bergmann glial cells](/details-cell/CL0000644). Its prominent expression in these cells, which are critical for neuronal support and homeostasis, points towards a specialized role in regulating calcium-dependent processes in the brain microenvironment. The identification and sequencing of this gene were part of large-scale human genome and cDNA sequencing efforts [Link](https://doi.org/10.1038/nature04727), [Link](https://doi.org/10.1038/ng1285). ## Cellular Roles and Expression Landscape The expression profile of [CACHD1](/details-gene/57685) highlights its specialized role, primarily within the central nervous system and in specific epithelial tissues. **Overall**, the gene shows the highest significance in glial cell populations. It is a top marker for [astrocyte of the cerebral cortex](/details-cell/CL0002605) (CSI: 18.41), [Bergmann glial cell](/details-cell/CL0000644) (CSI: 18.07), and [astrocyte](/details-cell/CL0000127) (CSI: 16.03) generally. This suggests a fundamental role for [CACHD1](/details-gene/57685) in the function of these supportive cells, which are known to rely heavily on calcium signaling for processes like neurotransmitter uptake, metabolic support for neurons, and communication via calcium waves. Beyond astrocytes, [CACHD1](/details-gene/57685) is also significantly expressed in cells lining the ventricles of the brain, including [ependymal cells](/details-cell/CL0000065) (CSI: 12.22) and [choroid plexus epithelial cells](/details-cell/CL0000706) (CSI: 10.64). This pattern suggests a potential involvement in cerebrospinal fluid (CSF) dynamics, either in its production or circulation. The gene's expression is not restricted to the nervous system. It also serves as a marker for various ciliated and endothelial cells, such as [ciliated epithelial cell](/details-cell/CL0000067) (CSI: 11.20), [respiratory basal cell](/details-cell/CL0002633) (CSI: 10.33), and [cardiac endothelial cell](/details-cell/CL0010008) (CSI: 7.69). This broader expression pattern indicates a more general function related to ion transport or signaling in diverse barrier and transport-related cell types. ## Pathways and Molecular Function The functional annotations for [CACHD1](/details-gene/57685) are consistently centered on calcium ion channel activity. According to Gene Ontology, it is implicated in the biological process of **[calcium ion transmembrane transport](/details-go/GO:0070588)**. Its molecular function is annotated as **[voltage-gated calcium channel activity](/details-go/GO:0005245)**, and it is considered a component of the **[voltage-gated calcium channel complex](/details-go/GO:0005891)**. This molecular function aligns perfectly with its high expression in astrocytes and other glial cells. These cells use fluctuations in intracellular calcium as a primary mode of communication and for responding to neuronal activity. The involvement of [CACHD1](/details-gene/57685) as a component of a voltage-gated calcium channel suggests it may be crucial for initiating or propagating these calcium signals, thereby contributing to glial modulation of synaptic activity and brain homeostasis. ## Research Directions The specific role of [CACHD1](/details-gene/57685) as a calcium channel component in glial and ependymal cells presents several avenues for future investigation, particularly concerning neurological health and disease. ### Proposed Hypotheses 1. **[CACHD1](/details-gene/57685) is a key regulator of astrocytic calcium waves and neurovascular coupling.** Given its high expression in astrocytes and its annotated function, we hypothesize that [CACHD1](/details-gene/57685) is essential for the calcium signaling that allows astrocytes to communicate with each other and to regulate local blood flow in response to neuronal activity. Loss-of-function could lead to impaired synaptic support and contribute to the pathology of neurodegenerative diseases. 2. **[CACHD1](/details-gene/57685) modulates cerebrospinal fluid (CSF) production and circulation.** Its high expression in [choroid plexus epithelial cells](/details-cell/CL0000706) and [ependymal cells](/details-cell/CL0000065) suggests a role in the calcium-dependent ion transport required for CSF secretion or in the function of cilia that drive CSF flow. Dysregulation could be implicated in conditions such as hydrocephalus. ### Experimental Approach To test the first hypothesis regarding the role of [CACHD1](/details-gene/57685) in astrocyte function, a series of experiments could be conducted. A specific shRNA or CRISPR-Cas9 knockout of [CACHD1](/details-gene/57685) could be generated in primary human or rodent astrocyte cultures. Using live-cell calcium imaging with a genetically encoded sensor like GCaMP, researchers could measure the frequency, amplitude, and spatial propagation of both spontaneous and neurotransmitter-evoked calcium waves. A significant alteration in these parameters in the knockout cells compared to controls would provide direct evidence for its role in astrocytic calcium signaling. Subsequent co-culture experiments with neurons could then assess the downstream impact on synaptic transmission and plasticity. ### Therapeutic Potential As a putative component of a voltage-gated calcium channel, [CACHD1](/details-gene/57685) represents a plausible therapeutic target. Its high specificity for glial and specialized central nervous system epithelial cells suggests that modulating its activity could have targeted effects on neurological processes. For conditions characterized by astrocyte hyperactivity or gliosis (e.g., epilepsy, chronic pain, or post-injury scarring), a small molecule **inhibitor** of [CACHD1](/details-gene/57685) could potentially dampen pathological glial signaling. Conversely, in diseases involving glial hypofunction, an **activator** could enhance their supportive roles. The development of such compounds would depend on a deeper understanding of the channel complex it belongs to and would require careful consideration of potential on-target effects in other expressing cell types, such as endothelial cells.

Genular Protein ID: 2674515232

Symbol: CAHD1_HUMAN

Name: VWFA and cache domain-containing protein 1

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 17974005

Title: The full-ORF clone resource of the German cDNA consortium.

PubMed ID: 17974005

DOI: 10.1186/1471-2164-8-399

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 10997877

Title: Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.

PubMed ID: 10997877

DOI: 10.1093/dnares/7.4.271

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

Sequence Information:

  • Length: 1274
  • Mass: 142290
  • Checksum: C20F8657C456A755
  • Sequence:
  • MARQPEEEET AVARARRPPL WLLCLVACWL LGAGAEADFS ILDEAQVLAS QMRRLAAEEL 
    GVVTMQRIFN SFVYTEKISN GESEVQQLAK KIREKFNRYL DVVNRNKQVV EASYTAHLTS 
    PLTAIQDCCT IPPSMMEFDG NFNTNVSRTI SCDRLSTTVN SRAFNPGRDL NSVLADNLKS 
    NPGIKWQYFS SEEGIFTVFP AHKFRCKGSY EHRSRPIYVS TVRPQSKHIV VILDHGASVT 
    DTQLQIAKDA AQVILSAIDE HDKISVLTVA DTVRTCSLDQ CYKTFLSPAT SETKRKMSTF 
    VSSVKSSDSP TQHAVGFQKA FQLIRSTNNN TKFQANTDMV IIYLSAGITS KDSSEEDKKA 
    TLQVINEENS FLNNSVMILT YALMNDGVTG LKELAFLRDL AEQNSGKYGV PDRMALPVIK 
    GSMMVLNQLS NLETTVGRFY TNLPNRMIDE AVFSLPFSDE MGDGLIMTVS KPCYFGNLLL 
    GIVGVDVNLA YILEDVTYYQ DSLASYTFLI DDKGYTLMHP SLTRPYLLSE PPLHTDIIHY 
    ENIPKFELVR QNILSLPLGS QIIAVPVNSS LSWHINKLRE TGKEAYNVSY AWKMVQDTSF 
    ILCIVVIQPE IPVKQLKNLN TVPSSKLLYH RLDLLGQPSA CLHFKQLATL ESPTIMLSAG 
    SFSSPYEHLS QPETKRMVEH YTAYLSDNTR LIANPGLKFS VRNEVMATSH VTDEWMTQME 
    MSSLNTYIVR RYIATPNGVL RIYPGSLMDK AFDPTRRQWY LHAVANPGLI SLTGPYLDVG 
    GAGYVVTISH TIHSSSTQLS SGHTVAVMGI DFTLRYFYKV LMDLLPVCNQ DGGNKIRCFI 
    MEDRGYLVAH PTLIDPKGHA PVEQQHITHK EPLVANDILN HPNFVKKNLC NSFSDRTVQR 
    FYKFNTSLAG DLTNLVHGSH CSKYRLARIP GTNAFVGIVN ETCDSLAFCA CSMVDRLCLN 
    CHRMEQNECE CPCECPLEVN ECTGNLTNAE NRNPSCEVHQ EPVTYTAIDP GLQDALHQCV 
    NSRCSQRLES GDCFGVLDCE WCMVDSDGKT HLDKPYCAPQ KECFGGIVGA KSPYVDDMGA 
    IGDEVITLNM IKSAPVGPVA GGIMGCIMVL VLAVYAYRHQ IHRRSHQHMS PLAAQEMSVR 
    MSNLENDRDE RDDDSHEDRG IISNTRFIAA VIERHAHSPE RRRRYWGRSG TESDHGYSTM 
    SPQEDSENPP CNNDPLSAGV DVGNHDEDLD LDTPPQTAAL LSHKFHHYRS HHPTLHHSHH 
    LQAAVTVHTV DAEC

Genular Protein ID: 3223143063

Symbol: A0A0A0MQY7_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 16710414

Title: The DNA sequence and biological annotation of human chromosome 1.

PubMed ID: 16710414

DOI: 10.1038/nature04727

Sequence Information:

  • Length: 1223
  • Mass: 136711
  • Checksum: 37D82E5CB4A453BF
  • Sequence:
  • MRRLAAEELG VVTMQRIFNS FVYTEKISNG ESEVQQLAKK IREKFNRYLD VVNRNKQVVE 
    ASYTAHLTSP LTAIQDCCTI PPSMMEFDGN FNTNVSRTIS CDRLSTTVNS RAFNPGRDLN 
    SVLADNLKSN PGIKWQYFSS EEGIFTVFPA HKFRCKGSYE HRSRPIYVST VRPQSKHIVV 
    ILDHGASVTD TQLQIAKDAA QVILSAIDEH DKISVLTVAD TVRTCSLDQC YKTFLSPATS 
    ETKRKMSTFV SSVKSSDSPT QHAVGFQKAF QLIRSTNNNT KFQANTDMVI IYLSAGITSK 
    DSSEEDKKAT LQVINEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA EQNSGKYGVP 
    DRMALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA VFSLPFSDEM GDGLIMTVSK 
    PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD SLASYTFLID DKGYTLMHPS LTRPYLLSEP 
    PLHTDIIHYE NIPKFELVRQ NILSLPLGSQ IIAVPVNSSL SWHINKLRET GKEAYNVSYA 
    WKMVQDTSFI LCIVVIQPEI PVKQLKNLNT VPSSKLLYHR LDLLGQPSAC LHFKQLATLE 
    SPTIMLSAGS FSSPYEHLSQ PETKRMVEHY TAYLSDNTRL IANPGLKFSV RNEVMATSHV 
    TDEWMTQMEM SSLNTYIVRR YIATPNGVLR IYPGSLMDKA FDPTRRQWYL HAVANPGLIS 
    LTGPYLDVGG AGYVVTISHT IHSSSTQLSS GHTVAVMGID FTLRYFYKVL MDLLPVCNQD 
    GGNKIRCFIM EDRGYLVAHP TLIDPKGHAP VEQQHITHKE PLVANDILNH PNFVKKNLCN 
    SFSDRTVQRF YKFNTSLAGD LTNLVHGSHC SKYRLARIPG TNAFVGIVNE TCDSLAFCAC 
    SMVDRLCLNC HRMEQNECEC PCECPLEVNE CTGNLTNAEN RNPSCEVHQE PVTYTAIDPG 
    LQDALHQCVN SRCSQRLESG DCFGVLDCEW CMVDSDGKTH LDKPYCAPQK ECFGGIVGAK 
    SPYVDDMGAI GDEVITLNMI KSAPVGPVAG GIMGCIMVLV LAVYAYRHQI HRRSHQHMSP 
    LAAQEMSVRM SNLENDRDER DDDSHEDRGI ISNTRFIAAV IERHAHSPER RRRYWGRSGT 
    ESDHGYSTMS PQEDSENPPC NNDPLSAGVD VGNHDEDLDL DTPPQTAALL SHKFHHYRSH 
    HPTLHHSHHL QAAVTVHTVD AEC